mRNA_E_fasciculatus_S2_contig7072.15239.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7072.15239.1
Unique NamemRNA_E_fasciculatus_S2_contig7072.15239.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7072.15239.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.540e-31
Identity = 125/222 (56.31%), Postives = 134/222 (60.36%), Query Frame = 1 
Query:    1 MVVVAGTKKPVACSEHAAETMVDVVNKKCGQPGCQKQPTHGLPGTRTREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVIPPTSRSRHKRARATASDAAARPGGASMAVPDASPAPEQVADVEQENQPSPEAGDGSAASAGRAEATDERSPSPLATAYENSSFI 666
            MVVVAGT KPVACSEHAAE M++VVNK+CG+PGCQKQPTHGLPGTRTRE XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                    RARATASD A R GGASMA  DASP+PEQVA VEQE  PSP A   SAASAG A A DER+PSP+  A+ENS+FI
Sbjct:  279 MVVVAGTTKPVACSEHAAEAMINVVNKECGRPGCQKQPTHGLPGTRTREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-------------------------------------------------------------------RARATASDPA-RLGGASMAASDASPSPEQVAGVEQERPPSPSAEHESAASAGGAGAVDERNPSPVVAAFENSNFI 432
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BLAST of mRNA_E_fasciculatus_S2_contig7072.15239.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.390e-21
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:  406 VVIPPTSRSRHKRARATASDAAARPGGASMAVPDASPAPEQVADVEQENQPSPEAGDGSAASAGRAEATDERSPSPLATAYENSSFITQ 672
            VVIPPTSR RHK+ARATASD A R  GAS+A  DASP+PEQVA +E E+ P P A DGSAASAG AEA DER+PSP+  AYENSSFI Q
Sbjct:  494 VVIPPTSRKRHKQARATASDPA-RLCGASVAASDASPSPEQVAGMEPEHPPLPAAEDGSAASAGVAEAADERNPSPVVAAYENSSFIVQ 581
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7072.15239.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.540e-3156.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-72.390e-2171.91n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7072contigE_fasciculatus_S2_contig7072:418..1092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score105.1
Seed ortholog evalue4.2e-20
Seed eggNOG ortholog2880.D7G4X8
Model size675
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size675
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842367.684893-CDS-E_fasciculatus_S2_contig7072:417..10921696842367.684893-CDS-E_fasciculatus_S2_contig7072:417..1092Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7072 418..1092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7072.15239.1prot_E_fasciculatus_S2_contig7072.15239.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7072 418..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7072.15239.1

>prot_E_fasciculatus_S2_contig7072.15239.1 ID=prot_E_fasciculatus_S2_contig7072.15239.1|Name=mRNA_E_fasciculatus_S2_contig7072.15239.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MVVVAGTKKPVACSEHAAETMVDVVNKKCGQPGCQKQPTHGLPGTRTREF
CFAHAPPGMINLHIKMCGQEGCSKQRSHGVVGTEKREFCGEHAVEGMVSL
LGKRCAQEDCSNRASHGLAGSREKRFCQAHAGEEMVVIPPTSRSRHKRAR
ATASDAAARPGGASMAVPDASPAPEQVADVEQENQPSPEAGDGSAASAGR
AEATDERSPSPLATAYENSSFITQ*
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mRNA from alignment at E_fasciculatus_S2_contig7072:418..1092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7072.15239.1 ID=mRNA_E_fasciculatus_S2_contig7072.15239.1|Name=mRNA_E_fasciculatus_S2_contig7072.15239.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7072:418..1092+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGTTGTTGCAGGTACCAAGAAGCCGGTGGCCTGCTCTGAGCACGC
GGCGGAGACAATGGTCGATGTTGTTAACAAGAAATGCGGCCAACCTGGTT
GCCAGAAGCAGCCGACCCATGGTTTGCCAGGTACCAGGACGCGTGAATTC
TGCTTCGCCCACGCCCCGCCGGGGATGATCAATCTGCACATCAAGATGTG
TGGCCAGGAGGGGTGTTCCAAACAAAGGAGCCACGGCGTGGTGGGCACGG
AGAAGCGGGAGTTTTGTGGAGAGCACGCGGTGGAAGGCATGGTATCCTTG
CTCGGCAAAAGGTGTGCCCAGGAGGACTGCTCCAACAGGGCGAGCCACGG
GCTGGCAGGGAGTAGGGAGAAGCGGTTCTGCCAAGCACACGCGGGAGAAG
AGATGGTTGTCATCCCACCGACGTCGAGGAGCCGACATAAGCGAGCCCGG
GCGACGGCAAGCGACGCCGCCGCGCGGCCAGGCGGTGCTTCGATGGCCGT
TCCCGACGCCTCGCCGGCTCCAGAACAAGTTGCGGATGTGGAGCAAGAAA
ACCAACCATCGCCAGAGGCAGGAGACGGGTCAGCAGCATCGGCAGGACGT
GCAGAGGCGACCGACGAACGGAGCCCTTCGCCACTTGCCACTGCCTATGA
GAACTCCAGTTTTATCACCCAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7072:418..1092+

>mRNA_E_fasciculatus_S2_contig7072.15239.1 ID=mRNA_E_fasciculatus_S2_contig7072.15239.1|Name=mRNA_E_fasciculatus_S2_contig7072.15239.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7072:418..1092+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGTTGTTGCAGGTACCAAGAAGCCGGTGGCCTGCTCTGAGCACGC
GGCGGAGACAATGGTCGATGTTGTTAACAAGAAATGCGGCCAACCTGGTT
GCCAGAAGCAGCCGACCCATGGTTTGCCAGGTACCAGGACGCGTGAATTC
TGCTTCGCCCACGCCCCGCCGGGGATGATCAATCTGCACATCAAGATGTG
TGGCCAGGAGGGGTGTTCCAAACAAAGGAGCCACGGCGTGGTGGGCACGG
AGAAGCGGGAGTTTTGTGGAGAGCACGCGGTGGAAGGCATGGTATCCTTG
CTCGGCAAAAGGTGTGCCCAGGAGGACTGCTCCAACAGGGCGAGCCACGG
GCTGGCAGGGAGTAGGGAGAAGCGGTTCTGCCAAGCACACGCGGGAGAAG
AGATGGTTGTCATCCCACCGACGTCGAGGAGCCGACATAAGCGAGCCCGG
GCGACGGCAAGCGACGCCGCCGCGCGGCCAGGCGGTGCTTCGATGGCCGT
TCCCGACGCCTCGCCGGCTCCAGAACAAGTTGCGGATGTGGAGCAAGAAA
ACCAACCATCGCCAGAGGCAGGAGACGGGTCAGCAGCATCGGCAGGACGT
GCAGAGGCGACCGACGAACGGAGCCCTTCGCCACTTGCCACTGCCTATGA
GAACTCCAGTTTTATCACCCAGTAG
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