mRNA_E_fasciculatus_S2_contig7058.15221.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7058.15221.1
Unique NamemRNA_E_fasciculatus_S2_contig7058.15221.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.960e-31
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNEDDGEACRNSFACIDPNAPCVDDDSVAPKLRLGC 224
            M++NC YPG +GNG CD  NN ELCAYDGGDCCECTCE  EDD  ACRN+FAC+DPNAPCVDDDSV   +   C
Sbjct:  278 MIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLEDDDWACRNNFACVDPNAPCVDDDSVTIDMLENC 351          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 8.160e-30
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNEDDGEACRNSFACIDPNAPCVDDDSVAPKLRLGCRNW 233
            M++NC YPG +G+G CDE NN ELCAYDGGDCCECTCEG+EDD   CRN FAC+DPNAPCVDDDSV   +   C +W
Sbjct:   53 MIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHCRN-FACVDPNAPCVDDDSVTIDMIENC-SW 127          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.100e-24
Identity = 48/81 (59.26%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEG-NEDDG------EACRNSFACIDPNAPCVDDDSVAPKLRLGC 224
            MVENC Y G VGNG CDE NN E C YDGGDCCECTC+  + DDG        C N FACIDPNAPCV+DD +   +   C
Sbjct:  120 MVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENC 200          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.920e-23
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNEDDGEACRNSFACIDPNAPCVDDDSVAPKLRLGCR----------NWRRVLQ 248
            M+ENC YP  VG+G+C++ NN ELCAYDGGDCC CTC+ + DD  AC  +FACIDP A CV+DD +   + + C            WRR+L+
Sbjct:  285 MIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDDDWACT-TFACIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLR 375          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.240e-19
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNEDDGE---------ACRNSFACIDPNAPCVDDDSVAPKLRLGC 224
            MVE C +   VG+G CDE NN ELC YDGGDCCECTCE    D +          C + FACIDPNAPCV+DD +   +   C
Sbjct:  139 MVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGSGFACIDPNAPCVNDDDITVDVDESC 221          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.270e-19
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNE----DDGEACRNS----FACIDPNAPCVDDDSVAPKLRLGC 224
            M+ENC    R+GNG CD   N E CAYDGGDCCECTC+ +     D GE C+      FACIDP+APCVDDD V  ++   C
Sbjct:   45 MMENCYDASRIGNGACDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLC 126          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.320e-19
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNE----DDGEACRNS----FACIDPNAPCVDDDSVAPKLRLGC 224
            M+ENC  P R+GNG CD   N E CAYDGGDCCECTC+ +     D G  C+      FACIDP+APCVDDD V  ++   C
Sbjct:  156 MMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLC 237          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.830e-18
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    3 MVENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGN-----EDDGEACRNSFACIDPNAPCVDDDSVAPKLRLGC 224
            M ENC Y   VG+G CDE NN E C YDGGDCCECTCE       +DD +     F+CIDPNA CV DD +   +   C
Sbjct:   89 MFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENC 167          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.960e-18
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    6 VENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCE----GNEDDGEACRNS--FACIDPNAPCVDDDSVAPKL 212
            V+NC  P  +G+G+CD+ NN E C YDGGDCC CTC+    G  DDG  C  S  FACIDP+APCV+DD     L
Sbjct:   95 VQNCGDPWAIGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFL 169          
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.630e-17
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    9 ENCRYPGRVGNGHCDESNNMELCAYDGGDCCECTCEGNEDDGEACRNSFACIDPNAPCVDDDSVAPKLRLGCRNWRRVL 245
            E+C   G +G+G+CD  NN   CAYDGGDCCECTCE N   G   R+ FACIDP APCVDDDSV   +   C ++ RV+
Sbjct:  176 ESCDAVG-MGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGG--RSGFACIDPGAPCVDDDSVTVDMIDNC-DYLRVM 250          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7058.15221.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.960e-3170.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.160e-3068.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.100e-2459.26protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.920e-2350.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.240e-1951.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LNR2.270e-1953.66domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.320e-1953.66protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.830e-1851.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.960e-1854.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.630e-1755.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7058contigE_fasciculatus_S2_contig7058:1628..2975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size275
Hectar predicted targeting categoryother localisation
Exons3
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842365.9242604-CDS-E_fasciculatus_S2_contig7058:1627..17051696842365.9242604-CDS-E_fasciculatus_S2_contig7058:1627..1705Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7058 1628..1705 +
1696842365.9368165-CDS-E_fasciculatus_S2_contig7058:2344..23821696842365.9368165-CDS-E_fasciculatus_S2_contig7058:2344..2382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7058 2345..2382 +
1696842365.9470398-CDS-E_fasciculatus_S2_contig7058:2817..29741696842365.9470398-CDS-E_fasciculatus_S2_contig7058:2817..2974Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7058 2818..2974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7058.15221.1prot_E_fasciculatus_S2_contig7058.15221.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7058 1628..2974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7058.15221.1

>prot_E_fasciculatus_S2_contig7058.15221.1 ID=prot_E_fasciculatus_S2_contig7058.15221.1|Name=mRNA_E_fasciculatus_S2_contig7058.15221.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp
IWWKIAGTQAGLEMDTATKVTIWSCARTMAATAANARARATRTTARPAVT
ASPVSIRTLLVWTMIASLQNCAWAAEIGDGYCSEDLNTPEC
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mRNA from alignment at E_fasciculatus_S2_contig7058:1628..2975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7058.15221.1 ID=mRNA_E_fasciculatus_S2_contig7058.15221.1|Name=mRNA_E_fasciculatus_S2_contig7058.15221.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1348bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7058:1628..2975+ (Ectocarpus fasciculatus EfasUO2)
ATATGGTGGAAAATTGCCGGTACCCAGGCCGGGTTGGAAATGGACACTGC GACGAAAGTAACAATATGGAGCTGTGCGGTACGTCTTGTGGTTCTAGTAT CGGAAGGCGTCCTTTTCTGCTTCTTGAAAACGTTGACCACCCTGCTAGAG CAGGAACAGTCGCAACCAAAGGTGGGCACCACCGCAACCAATCTTGTCCT TGAAGAAAACGCCGCATTTCCCTGCCAATGACCACCTTCTTAATTGATGG GTTCAGGCGGCTTGTCAGTGACCCGAGTCTAGGTTCTTAGACACCCCACA GAAATCGCGAGCTTCACTGTCTCAAGCGAAAGGCCGACGCATCCGGCAAA GTCGACAAATAAAAGCACAGGGGTGACGTTCACGCTCCATCCAGATATGC CATGTCTGTTTCCCGGGCGGGTAGTCCTAAGGCGAAGGTAGTGCTTTTGT TCTAGAAAACACCTTGGTCGTTTATCTTCCTCTGTTTCTCTCTCTCTTTT ATCTGCGCTCTTGGCAGCAGATACGCCGCAGGTAGTGTGTGATAGTCTAT TTTTTGTTTGCCGATTTCGTTAGTTCCTCTTGCCATTCTTGTACCCTTGG CACGCGACACTTGCCGACTTCAGACTTTCCCCAGAGATCGGGCCCAACAG AGTACCCCCCCTCTTTGTGCTCCCTCACGTTTCCCCCTCGCGGTTTCACT ATCCTCCTTTTCTTCAGCGTACGATGGCGGCGACTGCTGCGAATGCACGT GCGAGGTGCGTACGTGGGGCCCTTGCCTTTGTTGCACCTGCCACGCGAAC CCGCTTCAAAGTGGGGCATTCGACAGAGAAATTGTTGGATTTTTTGTCCC ATCAGTAGACATACCTGCCTCAAAGCTCTTCTTACCCTGTGTACCACTCT TCCTCCTCTTGTATTCTGGAGAAGCACCGTAGCATGTGATGGGTGTTTCA TCGGTCTCTTGTCCTCTCCGTCCACACTGTACAGTTGTCTGGAAAGTTGT TACCCCATACGCCTCCGCCAATTTTAACTGCGATTGGTCGTGTGCGAGGT GCCATTCACGGCGTGTCCGTGTCCAAGGGGTGGTAAAGTTGCGGGTTTCT AGAGAGGGTGGTCACTCCCCCCTTTCTGTTGCTGGAGCTTGAGTTTCCGC CGCAATATTTTTTTCCCTTTCGTGCGCGCTTCCCTTCAAGGGCAACGAGG ACGACGGCGAGGCCTGCCGTAACAGCTTCGCCTGTATCGATCCGAACGCT CCTTGTGTGGACGATGATAGCGTCGCTCCAAAACTGCGCCTGGGCTGCAG AAATTGGCGACGGGTACTGCAGTGAAGATCTCAACACGCCAGAATGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7058:1628..2975+

>mRNA_E_fasciculatus_S2_contig7058.15221.1 ID=mRNA_E_fasciculatus_S2_contig7058.15221.1|Name=mRNA_E_fasciculatus_S2_contig7058.15221.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7058:1628..2975+ (Ectocarpus fasciculatus EfasUO2)
ATATGGTGGAAAATTGCCGGTACCCAGGCCGGGTTGGAAATGGACACTGC
GACGAAAGTAACAATATGGAGCTGTGCGCGTACGATGGCGGCGACTGCTG
CGAATGCACGTGCGAGGGCAACGAGGACGACGGCGAGGCCTGCCGTAACA
GCTTCGCCTGTATCGATCCGAACGCTCCTTGTGTGGACGATGATAGCGTC
GCTCCAAAACTGCGCCTGGGCTGCAGAAATTGGCGACGGGTACTGCAGTG
AAGATCTCAACACGCCAGAATGC
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