mRNA_E_fasciculatus_S2_contig7050.15216.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7050.15216.1
Unique NamemRNA_E_fasciculatus_S2_contig7050.15216.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7050.15216.1 vs.
Match: Similar (to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 8.320e-50
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 APIKGSSSETASIFCALLRENFVGCVKSTWRGPTYNPVNTELQRRRSSLLLPEFQDGQSSDEETANPHFGRGPSGPVRPTGPRRHTGRGPTT 276
            APIKGSSSETASIFCAL+RENFVGCVKSTWRGPTYNPV TELQRRRSSLLLPEFQ+GQSSDEETANPHFG+ PSGPV PTGPRRH GR PTT
Sbjct:  956 APIKGSSSETASIFCALVRENFVGCVKSTWRGPTYNPVQTELQRRRSSLLLPEFQEGQSSDEETANPHFGKRPSGPVHPTGPRRHAGRAPTT 1047
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BLAST of mRNA_E_fasciculatus_S2_contig7050.15216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.640e-21
Identity = 54/92 (58.70%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 APIKGSSSETASIFCALLRENFVGCVKSTWRGPTYNPVNTELQRRRSSLLLPEFQDGQSSDEETANPHFGRGPSGPVRPTGPRRHTGRGPTT 276
            APIKGSSSETASIF AL+RENF                              EFQ+GQSSDEETANPHFG+ PSGPV PTGPRRH GR PTT
Sbjct: 1320 APIKGSSSETASIFFALVRENFTA----------------------------EFQEGQSSDEETANPHFGKRPSGPVPPTGPRRHAGRAPTT 1383
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BLAST of mRNA_E_fasciculatus_S2_contig7050.15216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-5
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    7 IKGSSSETASIFCALLRENFVGCVKSTWRGPTYNPVNTELQRRRSSLLLPEFQDGQSSDEETANPHFGRGP 219
            IKGS  E   IFC L+RENF+GCVK + +GP   P ++       S  LP  ++ ++ D E A    GR P
Sbjct:  243 IKGSWGEACGIFCVLVRENFIGCVKESVQGPRRKPRSSFTLA--VSDRLPGIKEEENRDPEAAEGIIGRKP 311
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BLAST of mRNA_E_fasciculatus_S2_contig7050.15216.1 vs.
Match: Beta (strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-5
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 IKGSSSETASIFCALLRENFVGCVKSTWRGPTYNPVNTELQRRRSSLLLPEFQDGQSSDEETANPHFGRGP 219
            IKGS  E+  IFC L+RENF+GCVK +  GP   P ++       S  LP  ++ +  D E A    GR P
Sbjct: 1417 IKGSWGESCGIFCVLVRENFIGCVKESVHGPRRKPRSSFTLA--VSDRLPGIKEEEKRDPEAAEGIIGRKP 1485
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7050.15216.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Similar8.320e-5091.30to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) ... [more]
Uncharacterized4.640e-2158.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.180e-540.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Beta1.700e-540.85strand repeat-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7050contigE_fasciculatus_S2_contig7050:362..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons3
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842365.5860913-CDS-E_fasciculatus_S2_contig7050:361..4861696842365.5860913-CDS-E_fasciculatus_S2_contig7050:361..486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7050 362..486 -
1696842365.6038043-CDS-E_fasciculatus_S2_contig7050:853..9371696842365.6038043-CDS-E_fasciculatus_S2_contig7050:853..937Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7050 854..937 -
1696842365.6135983-CDS-E_fasciculatus_S2_contig7050:1370..14401696842365.6135983-CDS-E_fasciculatus_S2_contig7050:1370..1440Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7050 1371..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7050.15216.1prot_E_fasciculatus_S2_contig7050.15216.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7050 362..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7050.15216.1

>prot_E_fasciculatus_S2_contig7050.15216.1 ID=prot_E_fasciculatus_S2_contig7050.15216.1|Name=mRNA_E_fasciculatus_S2_contig7050.15216.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
APIKGSSSETASIFCALLRENFVGCVKSTWRGPTYNPVNTELQRRRSSLL
LPEFQDGQSSDEETANPHFGRGPSGPVRPTGPRRHTGRGPTT*
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mRNA from alignment at E_fasciculatus_S2_contig7050:362..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7050.15216.1 ID=mRNA_E_fasciculatus_S2_contig7050.15216.1|Name=mRNA_E_fasciculatus_S2_contig7050.15216.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1079bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7050:362..1440- (Ectocarpus fasciculatus EfasUO2)
GCTCCGATCAAGGGAAGCAGCTCGGAGACCGCCTCCATCTTCTGCGCTCT
CTTGCGCGAGAACTTCGTCGGTAAGAGAGAGAGACGGCTGTAGCTCCGAA
ACGCCTTGTTGCTCTGTCGTCGATACGCGAAGGGAGACGTTCAGCGGGGC
AAGTGGCTACGTGTACATCGATCATTGCCTGGCTGGTGCCTCCCTACTTT
TCTGGCGTGCTGTCGTGTGGAAGAGATGGGTTAAGGGGGGACGACAAAGG
TGTTATCGGTGTCGTGGTGTTGTTGTTGTGGCTATCTGGTTCCTTGGCGT
GCTTCCAAGCACGAGAAGGCCCCCGACGGAATCCGCTCGGCCTGTGGTTA
CCCTCTGCACGTGTTACTTGTCATACAGCTATCGTCATCCTCATGGTGTG
CTCCATGTGAGGCAACTGTGTTGACGGCATCAGCGGTCGCTCTCTCTTTC
ATGCAAAAAAACGGGCGCGTTCACTCTGTTGCCACCAATCTTCTTTTTTT
CAGGCTGCGTCAAGTCTACCTGGAGGGGGCCCACGTACAACCCCGTCAAC
ACAGAACTACAACGCCGGCGTTCGAGCTTGCTCTTGCGTGAGTGAACAAC
ACGGAAAGCATGAAGAAGAGGCTCACATCACAGCAGCGATAGTTCTACAT
GGCACGTTGCTTTCTCGTTTTGCCGCGTGATGATGTTGGTGCGGTTCGGG
TGGCGTACCCTTTCGCATGCTTCGTTACACCACACGGCGTACACGTTTTG
CTTCATGGAGGTGTGGTAGTGGCCGTCCCCGCTTGCAGTTTTTTTTTTTA
TGCAAGCCCCCTCCCTCCCCGCTCCCTTCCTTGTGACAGCGGTAATCGAC
TAGGCACTCCTGCTCTCTCGCCCTCTGTTGTTGCTATCGCTGCCCGGCTT
ACCCCCAACCCCCCAACTCCCACGCCCACCAAACGACTCTGAATCAATCG
ACAGCGGAGTTCCAGGACGGGCAGTCCTCCGATGAGGAAACAGCGAACCC
GCACTTCGGAAGGGGGCCGTCGGGGCCTGTTCGGCCAACAGGCCCTCGCC
GACACACCGGAAGAGGGCCAACCACGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7050:362..1440-

>mRNA_E_fasciculatus_S2_contig7050.15216.1 ID=mRNA_E_fasciculatus_S2_contig7050.15216.1|Name=mRNA_E_fasciculatus_S2_contig7050.15216.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7050:362..1440- (Ectocarpus fasciculatus EfasUO2)
GCTCCGATCAAGGGAAGCAGCTCGGAGACCGCCTCCATCTTCTGCGCTCT
CTTGCGCGAGAACTTCGTCGGCTGCGTCAAGTCTACCTGGAGGGGGCCCA
CGTACAACCCCGTCAACACAGAACTACAACGCCGGCGTTCGAGCTTGCTC
TTGCCGGAGTTCCAGGACGGGCAGTCCTCCGATGAGGAAACAGCGAACCC
GCACTTCGGAAGGGGGCCGTCGGGGCCTGTTCGGCCAACAGGCCCTCGCC
GACACACCGGAAGAGGGCCAACCACGTAA
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