mRNA_E_fasciculatus_S2_contig705.15213.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig705.15213.1
Unique NamemRNA_E_fasciculatus_S2_contig705.15213.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig705.15213.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778_ECTSI)

HSP 1 Score: 530 bits (1364), Expect = 1.110e-188
Identity = 279/319 (87.46%), Postives = 287/319 (89.97%), Query Frame = 1 
Query:    1 MASIMGGGWKGLRFVVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQISKGVNGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQTKAAVVEGSIRNEEFGMFSTTLKASEKEGGVLGPLKWTSNPMSFPFAVQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDEASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVARVRSPSGRAFGCFNLTRSLNRQGSSSRVTLEGKDTGDFTWSLSNTSKRNTLVLSGRGRVAQRGAGTGVASTVSLKQSFRMF 957
            MA IMGGGWK LR +VLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQ+SKGV+GKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQ K AVVEGSIRNEE GMFSTTLKASEKEGGVLGPLKWTSNP+SFPFA+QEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPD+ASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVA                      GSSSRVTLEGKDTGDF WSLSNTSKR TLVLSGRGRVA+RG GTGV STVSL+QSFRMF
Sbjct:    1 MAGIMGGGWKWLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQDKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVA----------------------GSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF 297
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig705.15213.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.110e-18887.46protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig705contigE_fasciculatus_S2_contig705:18510..21704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size960
Hectar predicted targeting categorysignal peptide
Exons7
Cds size960
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig705.15213.1prot_E_fasciculatus_S2_contig705.15213.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig705 18510..21704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842365.2975743-CDS-E_fasciculatus_S2_contig705:18509..187551696842365.2975743-CDS-E_fasciculatus_S2_contig705:18509..18755Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 18510..18755 -
1696842365.3086407-CDS-E_fasciculatus_S2_contig705:19256..193711696842365.3086407-CDS-E_fasciculatus_S2_contig705:19256..19371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 19257..19371 -
1696842365.3199549-CDS-E_fasciculatus_S2_contig705:19795..200131696842365.3199549-CDS-E_fasciculatus_S2_contig705:19795..20013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 19796..20013 -
1696842365.3309221-CDS-E_fasciculatus_S2_contig705:20434..205151696842365.3309221-CDS-E_fasciculatus_S2_contig705:20434..20515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 20435..20515 -
1696842365.340951-CDS-E_fasciculatus_S2_contig705:20760..208241696842365.340951-CDS-E_fasciculatus_S2_contig705:20760..20824Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 20761..20824 -
1696842365.3529375-CDS-E_fasciculatus_S2_contig705:21088..211761696842365.3529375-CDS-E_fasciculatus_S2_contig705:21088..21176Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 21089..21176 -
1696842365.3653476-CDS-E_fasciculatus_S2_contig705:21556..217041696842365.3653476-CDS-E_fasciculatus_S2_contig705:21556..21704Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig705 21557..21704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig705.15213.1

>prot_E_fasciculatus_S2_contig705.15213.1 ID=prot_E_fasciculatus_S2_contig705.15213.1|Name=mRNA_E_fasciculatus_S2_contig705.15213.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=320bp
MASIMGGGWKGLRFVVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRG
NYDGQISKGVNGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQ
TKAAVVEGSIRNEEFGMFSTTLKASEKEGGVLGPLKWTSNPMSFPFAVQE
ATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHS
PDEASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVARVRSPSGRAFGC
FNLTRSLNRQGSSSRVTLEGKDTGDFTWSLSNTSKRNTLVLSGRGRVAQR
GAGTGVASTVSLKQSFRMF*
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mRNA from alignment at E_fasciculatus_S2_contig705:18510..21704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig705.15213.1 ID=mRNA_E_fasciculatus_S2_contig705.15213.1|Name=mRNA_E_fasciculatus_S2_contig705.15213.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3195bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig705:18510..21704- (Ectocarpus fasciculatus EfasUO2)
ATGGCAAGCATCATGGGAGGAGGCTGGAAGGGGCTGCGGTTTGTGGTGCT
CTTTCATGTTCTCGCGAGAGCGTCGGCGGGCGGGACAGTTTCAATCAATA
TCAAAGACCTGGGCGCTATCGAAGGGATCCAATCGCTGGACATCCGAGGT
TCGAAGCAGTTGGCGCTGTAAATGCATGGGGTACAAAGAGAACCGCTCCG
TGTCTTCCGTACAAGGTGTTGCGCGTTGCGCCACGCCCTGTGGAATGCAT
AGTAATGCAGCCAATGCCTTACAAGTGGAAGCCAACATACACATCTGTTC
AACTGCTGATGCAACTTCGTGGGGTATTTGGCGAAGTGAAATATCGAACA
GCAGGTGATGTCTGCGCACAGCGTGCGGTTCGTGCGTTGCAGAACAAGCA
CCCCGGTCTCGTGTGGGCGGAGCTTGATCGGAATCATCATGTGATCGTCG
TGAGGATTCTAGTCATAAGGACAAGCAAAAGTGGATCATCACAACTTGCC
CCCCTGTTTGCTCGTTTTCGCACGTTAGGGAACTATGATGGGCAAATCTC
CAAGGGCGTCAACGGCAAGGCTTCGTACGTGTTCAACAAGGATCGCGTCT
TGCCGGCTGGTCTAAGGTGCCTCCCTCCTACAGCAGTATGTCTCATATTC
CCGCTTCCCGCATGCCTTTTCCGTCATGAGTTTTCAAGAATTGGTAGCCA
CAAAGGCGTGTTTACACCGCCTGTGCGGAGTCTGCACCGCCTGTGCGGAG
TCAAAATTCTCTAGCGCGCGGTATGCGTCAATAACTGCTTGCATGGGATC
ATGCAATCCCTTGCATATATTTCGGGGAAGCGCTGAATCACAGTGCCTCT
GGTGGGCCTCCCTTTTTGTCCTTGCTGCAGCGCGTCATCGAGCACGGACA
CCGCGTACGGAAAAGCCTTCGGGACGGTAACCGTTGACCCTCAGGTAACT
TGTTTCATTCAGCCTTCATTCGGCACTTTTTTGTGCGTACATCAATGAGA
GTTGCAGCCGCTGAAGGGGGCGATTTCTGGGCAGTAGTGACATGTTGTGA
ATCGCACCATCGGGCCAAAATGCAACAGCAAGAACCGGGTTCATCTACAG
TTTCACTACAGTCCCTCCGATATCGCTTGACGCCCAACAATATCTGCTTG
TCGTCCTTGTATCCCGGTTATCATTTTCGATGCACGCAGACAAAGGCTGC
CGTAGTGGAAGGATCGATCCGGAACGAGGAGTTCGGGATGTTTTCGACGA
CTTTGAAAGCAAGCGAGAAGGTGAGCTCTGCCTCCGTCCGGTATACTCCT
TCTGCCTGGCCACCGAACATGCCAACCGGCGTCACCTCTCCCCTGCCGAC
GATGACTGCTGTTCTCTTCGCGTTTGGCGTGCTCTGAGCAAGTTTGCTGT
TGTACATGCCCTGCACACCAACCATGCCTTCCCAATAGCAGGACTGCTAA
GCTCAAGCTACACCTACCGAGCGCGCTAGTTTCGAGTAGTACTGGGGTGT
GTGCACCCTGAATTCCTCGCCCTTCGTCCAACATTCCTGGTTCAAGGTCG
CTGAGGCATAACCAATGGTCGTGTTTGTGGCGTGCACCGGACCCTGGCCT
TACCCTCACCGAGAAGTTGAACTTCGAAACCCATCGAAAATGTTTTCTCG
GTTCCCTACTTTTGTCTTCTTGTCCCGAAAACACTCGCCAGGAGGGTGGC
GTGCTTGGCCCGTTGAAGTGGACAAGCAACCCTATGTCGTTTCCCTTCGC
CGTGCAAGAAGCCACCCCTATGGTTATCGCCATTGCTCACGACATCAACA
CTAAGGAGGGACACTTGAGCATCGCGGCAAAGCTTAACAGCAACTTCGAC
GGGAAGCTGATGCTCCCTTCTCAGGGAGATCCGGTCGCAACATTGGTTGG
GTCGCATAGGTGAACGTCTACATGTGTCAGTATGTGCAGCAGCATCAGCA
AGTGTTTGCGGGATGAAATTAGAATTTTCGCGATACTGGGGTGCGTGTCC
CGTAAAATATGCACAGGAAATGCGTTGGTTAGGAGTTACATCGGAACACT
GGAAGCTGTACTCTTCATCCCGCCAATGGGGCATGTGGGCATAGGCCGCT
TTGAAACGGCGGCAGAAACTCCGTTCGCCAGCATCACCGGCAGAAAGTCC
GGATGTGCCGTGTGTTGTGGATCGAAGTCAAAGCCGCCCGCCAAAAGCTA
ACGCACCTTCTTTGCACCCGACGGGCTAGCATTTTGTCTCGGCAAACAGT
AGTAGCAAAAGTAGACATGGTGTTGCTGGCACCCTTGACTCGGCAGCCGT
GCGCGTGCGTGTTCTTCGGTTTTCGACCCACAGCCCGGACGAAGCTTCGG
ACATCCGGGCTTCCGCGAACGTGCTGGACTTGGTGGGGTCCGGGTTCGGA
AAGGGGGCGATCGGCGTAACATACCGACGCGACTTGGACGCGGTTGCGGT
GAGAGACAAAAGCTTGCAGATGTGACAGACGTGAGAGAGGGGAGGTTCAG
TGCAGACGAGGGGTTCGAGGTGTGAGAGATGATGGGTTGTGGCAGCAGAC
ATTCGAGGCCGGCTGGGCGGAGTGCTGGATATAGCTGTGTTGTTGTTTGG
TAGCTGTTCACGACAGCGGCCGCGCTCTTACCGTGTCGTACCCAACCTAG
CCGTGATAACATCTTTGGTATTGTTTCGCTTAGTTTTTTAACCGCTCGGA
ATCTGTTGGGCACAATTGGCGGCGGTCTGTTCTTGGTCACCCTGATCGAA
GTAACCGTGCCTGTGTTTAACCCATTTCCTCGACCGACAATGCCCTAACT
CAATCGGCAGGGGTCGAGCTCGAGGGTAACACTCGAAGGGAAAGACACTG
GTGACTTTGCGTGGAGCCTGAGCAACACCTCAAAGCGAATGACGCTAGTG
CTGTCCGGCAGGGGCCGAGTCGCCCGAAGAGGCGCGGGCACCGGGGTAGC
GAGTACGGTCTCCCTCAGGCAGAGCTTTCGGATGTTTTAACCTGACACGC
TCCCTCAATCGGCAGGGATCGAGCTCGAGGGTAACGCTCGAAGGGAAGGA
CACTGGTGACTTTACGTGGAGTCTGAGCAACACCTCAAAGCGAAATACGC
TAGTGCTGTCCGGCAGGGGCCGAGTCGCCCAGAGAGGCGCGGGCACCGGG
GTAGCGAGTACGGTCTCCCTCAAGCAAAGCTTTCGGATGTTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig705:18510..21704-

>mRNA_E_fasciculatus_S2_contig705.15213.1 ID=mRNA_E_fasciculatus_S2_contig705.15213.1|Name=mRNA_E_fasciculatus_S2_contig705.15213.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=960bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig705:18510..21704- (Ectocarpus fasciculatus EfasUO2)
ATGGCAAGCATCATGGGAGGAGGCTGGAAGGGGCTGCGGTTTGTGGTGCT
CTTTCATGTTCTCGCGAGAGCGTCGGCGGGCGGGACAGTTTCAATCAATA
TCAAAGACCTGGGCGCTATCGAAGGGATCCAATCGCTGGACATCCGAGGG
AACTATGATGGGCAAATCTCCAAGGGCGTCAACGGCAAGGCTTCGTACGT
GTTCAACAAGGATCGCGTCTTGCCGGCTGGTCTAAGCGCGTCATCGAGCA
CGGACACCGCGTACGGAAAAGCCTTCGGGACGGTAACCGTTGACCCTCAG
ACAAAGGCTGCCGTAGTGGAAGGATCGATCCGGAACGAGGAGTTCGGGAT
GTTTTCGACGACTTTGAAAGCAAGCGAGAAGGAGGGTGGCGTGCTTGGCC
CGTTGAAGTGGACAAGCAACCCTATGTCGTTTCCCTTCGCCGTGCAAGAA
GCCACCCCTATGGTTATCGCCATTGCTCACGACATCAACACTAAGGAGGG
ACACTTGAGCATCGCGGCAAAGCTTAACAGCAACTTCGACGGGAAGCTGA
TGCTCCCTTCTCAGGGAGATCCGGTCGCAACATTGGTTGGGTCGCATAGC
CCGGACGAAGCTTCGGACATCCGGGCTTCCGCGAACGTGCTGGACTTGGT
GGGGTCCGGGTTCGGAAAGGGGGCGATCGGCGTAACATACCGACGCGACT
TGGACGCGGTTGCGCGAGTACGGTCTCCCTCAGGCAGAGCTTTCGGATGT
TTTAACCTGACACGCTCCCTCAATCGGCAGGGATCGAGCTCGAGGGTAAC
GCTCGAAGGGAAGGACACTGGTGACTTTACGTGGAGTCTGAGCAACACCT
CAAAGCGAAATACGCTAGTGCTGTCCGGCAGGGGCCGAGTCGCCCAGAGA
GGCGCGGGCACCGGGGTAGCGAGTACGGTCTCCCTCAAGCAAAGCTTTCG
GATGTTTTGA
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