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Homology
BLAST of mRNA_E_fasciculatus_S2_contig7047.15209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ2_ECTSI) HSP 1 Score: 519 bits (1337), Expect = 5.280e-179 Identity = 348/374 (93.05%), Postives = 350/374 (93.58%), Query Frame = 1
Query: 7 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAXXXXXXLGSXAGTAEDEAGASASKLSGLEKVVRRXXXXAEVAHSELAKERAGAEEAVARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARVAEAAESEXXXXXXXXXXASLESENREXXXXXXXXXXXXXXXXXXADKAVKTEEETRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEVIVTKYADLKVKMATMEAEKDGAADLVDEWQSNSNGERGEGGRKVSQAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 1128
LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAA LGS AGTAEDEAGASASKLSGLEKVVRRXXXX EVAHSELAKERAGAEEA ARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAAR AEA ESEXXXXXXXXXX XXXXXXXXXXXXXXXXX ADKAVK EE+TRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIE IVTKYADLKVKMATMEAEKDGAADLVDEWQSNS GERGEGGRKVS+AAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD
Sbjct: 8 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEKVVRRXXXXXEVAHSELAKERAGAEEAAARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAVESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTKYADLKVKMATMEAEKDGAADLVDEWQSNSKGERGEGGRKVSEAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 381
BLAST of mRNA_E_fasciculatus_S2_contig7047.15209.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 510 bits (1313), Expect = 1.730e-163 Identity = 341/375 (90.93%), Postives = 347/375 (92.53%), Query Frame = 1
Query: 4 QLSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAXXXXXXLGSXAGTAEDEAGASASKLSGLEKVVRRXXXXAEVAHSELAKERAGAEEAVARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARVAEAAESEXXXXXXXXXXASLESENREXXXXXXXXXXXXXXXXXXADKAVKTEEETRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEVIVTKYADLKVKMATMEAEKDGAADLVDEWQSNSNGERGEGGRKVSQAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 1128
+LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLA+EVETLREQLAAA LGS AGTAEDEAGASASKLSGLE XXXX VAHSELAKERAGAEEAVARASKAERELDQARARAAVL+NKLATLEKDKLELLADANSSRARASALEEKYSAAR AEAAES XXXXXXXXXX SEN + XXXXXXXXXXXXXXX ADKAVK EE+TRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIE IVTKYADLKVKMA MEAEKDGAADLVDEWQSNS GERGEGGRKVS+AAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD
Sbjct: 966 ELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEXXXXXXXXXXXVAHSELAKERAGAEEAVARASKAERELDQARARAAVLENKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAAESXXXXXXXXXXXXXXXSENLKAVXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTKYADLKVKMAAMEAEKDGAADLVDEWQSNSKGERGEGGRKVSEAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 1340
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1747 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Cds size | 546 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842364.720159-UTR-E_fasciculatus_S2_contig7047:549..822 | 1696842364.720159-UTR-E_fasciculatus_S2_contig7047:549..822 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 550..822 + |
| 1696842364.7545674-UTR-E_fasciculatus_S2_contig7047:1392..1518 | 1696842364.7545674-UTR-E_fasciculatus_S2_contig7047:1392..1518 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 1393..1518 + |
| 1696842364.765248-UTR-E_fasciculatus_S2_contig7047:1957..2050 | 1696842364.765248-UTR-E_fasciculatus_S2_contig7047:1957..2050 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 1958..2050 + |
| 1696842364.774921-UTR-E_fasciculatus_S2_contig7047:2454..2547 | 1696842364.774921-UTR-E_fasciculatus_S2_contig7047:2454..2547 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 2455..2547 + |
| 1696842364.838567-UTR-E_fasciculatus_S2_contig7047:4831..5146 | 1696842364.838567-UTR-E_fasciculatus_S2_contig7047:4831..5146 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 4832..5146 + |
| 1696842364.8473885-UTR-E_fasciculatus_S2_contig7047:5367..5668 | 1696842364.8473885-UTR-E_fasciculatus_S2_contig7047:5367..5668 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7047 5368..5668 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842364.7846725-CDS-E_fasciculatus_S2_contig7047:2547..2637 | 1696842364.7846725-CDS-E_fasciculatus_S2_contig7047:2547..2637 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7047 2548..2637 + |
| 1696842364.7943745-CDS-E_fasciculatus_S2_contig7047:3269..3406 | 1696842364.7943745-CDS-E_fasciculatus_S2_contig7047:3269..3406 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7047 3270..3406 + |
| 1696842364.804142-CDS-E_fasciculatus_S2_contig7047:3713..3791 | 1696842364.804142-CDS-E_fasciculatus_S2_contig7047:3713..3791 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7047 3714..3791 + |
| 1696842364.8159318-CDS-E_fasciculatus_S2_contig7047:4244..4365 | 1696842364.8159318-CDS-E_fasciculatus_S2_contig7047:4244..4365 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7047 4245..4365 + |
| 1696842364.8278105-CDS-E_fasciculatus_S2_contig7047:4711..4831 | 1696842364.8278105-CDS-E_fasciculatus_S2_contig7047:4711..4831 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7047 4712..4831 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7047.15209.1 >prot_E_fasciculatus_S2_contig7047.15209.1 ID=prot_E_fasciculatus_S2_contig7047.15209.1|Name=mRNA_E_fasciculatus_S2_contig7047.15209.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=182bp
MEEALSKESAAEEKADKAVKTEEETRAEMAGKTEEVMRLTAQRNSAKSRA DSLAKDLSRVCGGGRTLDQIEVIVTKYADLKVKMATMEAEKDGAADLVDE WQSNSNGERGEGGRKVSQAAKRALRENTELHGRVAAMTESLQMRAHQLEG QRQSNEFLLKRVEELEQQVATTSGKTAIGTD* back to topmRNA from alignment at E_fasciculatus_S2_contig7047:550..5668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig7047.15209.1 ID=mRNA_E_fasciculatus_S2_contig7047.15209.1|Name=mRNA_E_fasciculatus_S2_contig7047.15209.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5119bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7047:550..5668+ (Ectocarpus fasciculatus EfasUO2) TCCCAGCTAAGCCTGGTGTCCTCCGAGCTGGACCTCCTGCGGCCGTTCTC
CAAGTCCCTCGCCGCCCGCGCCGAGGGCAAGGAGGCCGCCGAGGAGGCCG
CCGGCAACCTCGCCACGGAGGTGGAGACCCTCAGGGAGCAGCTCGCCGCG
GCGGTGGAGTCGGCCGAGAGGCTGGGGTCGAGGGCCGGGACGGCGGAGGA
CGAGGCCGGGGCGAGCGCCAGCAAGCTCAGCGGGCTGGAGAAGGTGGTCC
GCCGGCTCGGCGGGGAGGCCGAGGTGCGTGCGTGTGTGTGTGTGTCTTTA
TTGTTAGCATCGACCCGCTAACCGGCTGGCCAATGAAAAGACTTCGGTCT
CAGAGCGGTTGAAACACAAAACACTTGTATGCCATGAACTGGGACCCCGT
GAGTGTGTGTGTGTGTGTGTGCATGCGTTGCGTGCGTGTGTCTGTGCTTC
TGTGTGTTTTGTTTTGTTTTTTTCTTACGAAAGCGTACCGAAATTTCATC
TCTAGCATCCACAGATAATAGAGTCCAGGGTAAATTAATAGTAAATTGGA
AGTTATTAGTGCTTTTTTTCGTTTGTGCTGTTTCGTGTGTATGTGTGTTC
GGAAAGGGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGG
GCGGGGGGACTAGCTACATGCCTCTGGTTGTTGGTGAGGGCGAAACGTGT
TTTTTCTTTTTCAATAGCTTAATGACATGTGCTTTGCACGCGCGTCTCGT
TACGACTCTGATCCAACTACTGTCGTGTAACCGCTGACCCCTTGTTTTCC
CGAAACGGCCGCAACGCCGCGTGGCGGGACGTGGGGCTTGCAGGTGGCGC
ACTCCGAGCTAGCCAAGGAGCGCGCCGGCGCCGAGGAGGCAGTGGCCAGG
GCAAGCAAGGCGGAGCGAGAGCTCGACCAGGCCAGGGCGAGGGCCGCCGT
CCTGGACAACAAACTGGCCGTGAGTTTTTTTTTTGTGTCAAGCCAAGCCT
TTCTTTATAAAAGATTGTTCATGTTTTTTTTCCCTTTTTCAAGTGTTGTG
GTGATAAAGTATGTGTGGTACTTTTTTATGTGTGGTTTTAGTCTTTCGGG
GGTTGCGTTTCAGGGTGATCCCTTGTTGTGGTGGCTGATGATGTTGCATC
GAGGGGGCTTGGAAAACAATGTAGTGCCGGCCGGTGTACTCTTGTTCCGG
CTGTGTGTGCCGACGGAAGACTCTCCAGAGGAAGACTGTCAACCGCACAC
CGCCGCCGACACTCCTCAACCTTCACATCCCACCCAACACCAATCATCAT
TTCTGGATCGTCCACTAAATAGCAAACCGTTGTTCCCTATTGGCGTTGTC
TTGACTTGTCTGCAATCGTGACTCTCGTCGTCATTGTTTTTTTTTTGGTA
CTGTACAGACGTTGGAGAAAGACAAGCTGGAGCTTTTGGCGGATGCGAAC
TCGTCGAGGGCTCGGGCCAGTGCTCTGGAGGAAAAGTACTCGGCGGCGAG
GGTAAGATACGAAATGGAGAACGAGATAGCCGACACGCGTGACGAGAGGA
TGAGAGGGACGGAGAGAGAGAGAGAGAGACGGGGGAGGAAAAACTAAAGA
TGTTGGTAGAATGGCAGCAAAAGAGCCAAGCAAAAGTCGTGAGGGTGTGT
GTACCCATCTCTTGTCTGTCTCTCTCCCTCTCTAGCTTGAGAATCTGGAA
CAGTTGGTTCTAGGCTGTGTTCCACTATGATAGCTGATGACTGAAGCAGA
GGAGTCGGAGGCACTACATAAGTCGCCCGACCTATCAACTTCAAACAACA
AAAACAATATGAACCACCACAAGTTGGAGGCACTACAAAAGTCGCCGACC
TAGATGAACGGCTAAACAGCTCAACCAACACAAACCCACGATTGATTCAA
TCAAGGTGGCTGAAGCAGCGGAGTCGGAAGCCCGCGTCTCCGAGCTCGAG
GGCAAGGTGGCGTCTCTCGAGTCAGAGAACCGGGAGGCCGTGGCGAGGAT
GGAGGAGGCCTTGTCCAAGGAGTCAGCGGCGGAGGAAAAGGCTGACAAGG
CGGTCAAGACGGAGGAGGAGACGCGGGCTGAGATGGCGGTCAGTGGTTTG
GTTTGCGAGCCGTGTGTTCGTTTCCACTATTTTTCTTTCTTTCTTTCGAA
CCGTGTTTGTTCGTATGTTTTCTAGAAAGTAAATCCACAGGGTAAACAAG
TCTAGGATAAAATTGTCATTCGATTCATAGTTGTTGTGTTGCCTTCCTTT
TTTGTGTGTGTGTGTTTAGTTGCGGGTAAACAAGTCCAGGATGAATGATA
AATTGGCAATCAATTAATGGTGTTGTTACCTTCCTTATGGTATGGGTGTG
TGTTTTGTTGGCGTGTTCCTTTTTGTATGGGTTGTGCCCCCTCCCTTACC
CTCGTCTACGGAACGAGAGATCTACCACCCCCCCTCTGATTTTTCCGTCC
CCTCTCGCCAACTAGCTTGCGTAGAGTCCTCCCCCGTCCCCCCCCCGCCC
CTTAAACTGCGGCATAGGAGATGGGCTGAAAAGGCGGGGAGTGATTCGAT
AGGATAGGTAGGGCAAGGGAGACTGTTTTTTTGCCACGTTTGGCGAATAT
GGAAGGAACGGTTTTCCATCGGTGATGGGCCCTGTGGAAACAATGCTCCG
TCCTCTCGAAGACGTGTGGTCAATGGTCTAACCCCCCCCGCCCCCCTACC
CCCCTTCTCTATATTGGCAGGGTAAGACGGAGGAGGTGATGCGACTGACC
GCTCAGCGAAACTCCGCCAAGAGCAGGGCCGACTCCCTTGCGAAGGACCT
CTCCCGGGTGTGCGGGGGCGGGCGTACCTTGGACCAGATCGAAGTCATCG
TCACAAAGTGAGCGGACGAACAAGCAAGCTGGTGGTACAGCAGTAGCCAT
GTTGCCATGTTGGTCGGGGGGGGCGTACTCATGTGACCGCATGCCGTACA
GTATGCATAGACTAGTCGTTTCAGTTTTCTTTGTTGTTTGCGTGTGTGTC
TCTCTCTCTATTTCTCTCCCTCTCCCTGTCTGTCTCTCTCTTGAGAATGG
GACGATTTTTAGCTGTAGTGTATGCGGGTGAGTGGATTCCATTCGATTGC
ATTGGCGGGTATGTGGGTGCGGGGATTGATTAAGTCGTCCTCGTTGTTTT
TGTTCATTGTTCAGGTACGCCGACCTGAAGGTGAAGATGGCTACCATGGA
GGCCGAGAAGGACGGCGCGGCGGACCTCGTGGACGAGTGGCAGTGAGTCA
CAGTGCTCTTGCTGTTGCTGTTGCTGCCTTACTACATTAGCACTCTATCT
GGTCGTTGTCTTTATTCCCCATTGTTGCTGTCTTCGCAAAGCCCCGTCCG
ACCCCCCCTTCAAAATCTCCACCTGTGTGTCCTCTTTAGTCTGTCCATGT
AGTGCGTCTTCATCTTGTGTCTGGTGCCAGTTTCTTGGACGGACAAGCCT
GCTGCTGCTGTTCACCTTGTCCTCGTCTCCTCTTCATGATTGTTTTCGCT
CTCACGTTTGCTCCTGGCTTGAGCTCAACCTACAACTGGTGGGCACGTGT
TCACCCGGTGTTGTGTTGGTGTTTGATGTTGGTAGGTTGTTGCTGCTGCT
GCTGCTGCTGCTGCCGCTCCCGCTGCTGTCGGAAACATGCATTTTGTCTA
AAGCTTTTGTGGTTGGGTTGTGTGCTCGTATGTGGTTATTTGCAGATCCA
ACTCAAACGGCGAGAGAGGGGAGGGGGGGCGTAAGGTTTCCCAGGCCGCG
AAGCGCGCCCTAAGGGAAAACACCGAGCTGCACGGACGAGTGGCAGCCAT
GACCGAGTCCCTCCAGGTATGTACAACCGTTGGTGGCGGGTGAAAGGAAG
CGTGCCGTTGTTGTTGTTGTTGTTGTTTCGTTGCAGTAGAGGTCGTGGTG
TTGGTAATAGCGTTGTCATTATGTTGCTTATATTGTCTGTCAGGTGTTGG
CGGCTTCTGCAAGCGTTTTTTTTTTCGCTGGAAAGTGCGGGTTGTTGCTG
TCGTTGTACAGCCTTGTGTTATTATTAATAGCATCTTGAAGCGAGGTGTG
CTGCGGGATTTCATCCTGCTGTGCCCCCCCTCGCCTCAACCAACTCGCGT
CTCTAGTCCTCGTAAGACATTGCTTTCCCGCCATTCGTTCGCTTGCATTT
CGTACACATCAGATGAGAGCACATCAGCTGGAGGGACAGAGACAGTCCAA
CGAGTTCCTCCTCAAGAGGGTTGAGGAGCTGGAACAGCAGGTTGCCACCA
CCAGCGGGAAGACGGCCATCGGGACGGATTGAAGCTTAATTAATTTTATT
GGTCGAGACGGATTGATTGATTGATTCCATTGGTTGGTCGAGACGGATGG
TTTGATTCTACTGGTCGGTCGAACACGGATTGATTGGTTTCTATTGGTTG
GTGGGAGTCGAGCAACTACTGCTGTATGGCTCGGCCGACGTGTTCCGCAA
TGGTAGGTATGTCCACTCGGTCGGTTAATTTCTTGGTCGGTCGAGCTTGG
GGGAGGTTGGTGATTTCGTTGATGAACCCCGCGAGTGCGTGTGCTGATGT
ATGATGATGCCCGCTTTTTTTTCTGTTTTTTTTTTTTTGTTTTTTTAGCT
TTGGTGTTGCTGCTTTTTTATGGTATGATNNNNNNNNNNGGTGGTTCGGT
CGGTTGTGTCCCATGTGTGTGTGTGTGCTGATGTTTGATTATGCCCGTTT
TTTTTTCTGTTTTTTTTTTTTGTTTTTTTAGCTTTGGTGTTGCTGCTTTG
TTACGGTATGATATTTCCTTTTACGTGGTTTTCACGTGGTTTTGTAAGGT
GAAAATAGTACGGCTGAGGGACTTGGCTTTTTCTCGGCCCGGTTAGCCCC
ACTTTCGCACGCAATGTGTTGGCTGGAGTTTCCCCCCTGACCCGGGTTCC
TTTGGGATGAACGCACGACACGTGCATGTAGTTTTTGTGTCCCATGCGTG
GTTGTTTCTTTTCGAGTTGAGTTCGCAGGGTGTGGAGGAGGTATGCATTA
TGTCTGTGCAGAACGGAGGAGAGGTTTTTCAATCGCGAGGTCGGCTTGCG
TTTTTCTCTTGCTGTTTTTTGCGAGACGGCTTTGGTTTTGGCGGTGGCGC
TGTATCCTCCCGCCATGTA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig7047:550..5668+ >mRNA_E_fasciculatus_S2_contig7047.15209.1 ID=mRNA_E_fasciculatus_S2_contig7047.15209.1|Name=mRNA_E_fasciculatus_S2_contig7047.15209.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=546bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7047:550..5668+ (Ectocarpus fasciculatus EfasUO2) ATGGAGGAGGCCTTGTCCAAGGAGTCAGCGGCGGAGGAAAAGGCTGACAA GGCGGTCAAGACGGAGGAGGAGACGCGGGCTGAGATGGCGGGTAAGACGG AGGAGGTGATGCGACTGACCGCTCAGCGAAACTCCGCCAAGAGCAGGGCC GACTCCCTTGCGAAGGACCTCTCCCGGGTGTGCGGGGGCGGGCGTACCTT GGACCAGATCGAAGTCATCGTCACAAAGTACGCCGACCTGAAGGTGAAGA TGGCTACCATGGAGGCCGAGAAGGACGGCGCGGCGGACCTCGTGGACGAG TGGCAATCCAACTCAAACGGCGAGAGAGGGGAGGGGGGGCGTAAGGTTTC CCAGGCCGCGAAGCGCGCCCTAAGGGAAAACACCGAGCTGCACGGACGAG TGGCAGCCATGACCGAGTCCCTCCAGATGAGAGCACATCAGCTGGAGGGA CAGAGACAGTCCAACGAGTTCCTCCTCAAGAGGGTTGAGGAGCTGGAACA GCAGGTTGCCACCACCAGCGGGAAGACGGCCATCGGGACGGATTGA back to top
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