mRNA_E_fasciculatus_S2_contig7044.15207.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7044.15207.1
Unique NamemRNA_E_fasciculatus_S2_contig7044.15207.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7044.15207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H1_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.000e-44
Identity = 98/129 (75.97%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    1 ELGDRQPSNTAGTAAADGAASGMDTTVGPPPATSAEQVEADRLIRAMTAAEGIRQQXXXXXRLPRSSSLLARDGVVTAAGAARRRPETRGITTGKPAASTAPGDIRGTLMSPWAGRKGGATRAARRSSS 387
            ELG  QPS  A T+AADGAASGM TT+G P A SAE V+ADRLI AMTAAEGIRQQ     RLPRSSSL ARDGV+TA G+ARRRPETRG  TGKPAASTAPGDIRG+L SPWA +KGG TRA RRSSS
Sbjct:  302 ELGGGQPSKAADTSAADGAASGMGTTIGTP-AMSAEPVQADRLISAMTAAEGIRQQQQQAVRLPRSSSLPARDGVITATGSARRRPETRGTITGKPAASTAPGDIRGSLRSPWAVKKGGVTRAVRRSSS 429
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7044.15207.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.000e-4475.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7044contigE_fasciculatus_S2_contig7044:6330..6722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.6518967-CDS-E_fasciculatus_S2_contig7044:6329..67221696842364.6518967-CDS-E_fasciculatus_S2_contig7044:6329..6722Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7044 6330..6722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7044.15207.1prot_E_fasciculatus_S2_contig7044.15207.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7044 6330..6722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7044.15207.1

>prot_E_fasciculatus_S2_contig7044.15207.1 ID=prot_E_fasciculatus_S2_contig7044.15207.1|Name=mRNA_E_fasciculatus_S2_contig7044.15207.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
ELGDRQPSNTAGTAAADGAASGMDTTVGPPPATSAEQVEADRLIRAMTAA
EGIRQQQQQAARLPRSSSLLARDGVVTAAGAARRRPETRGITTGKPAAST
APGDIRGTLMSPWAGRKGGATRAARRSSSCG
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mRNA from alignment at E_fasciculatus_S2_contig7044:6330..6722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7044.15207.1 ID=mRNA_E_fasciculatus_S2_contig7044.15207.1|Name=mRNA_E_fasciculatus_S2_contig7044.15207.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7044:6330..6722+ (Ectocarpus fasciculatus EfasUO2)
GAGCTTGGAGATCGACAACCATCAAATACTGCTGGCACTGCTGCCGCTGA
TGGGGCAGCAAGCGGCATGGACACCACCGTCGGCCCCCCACCAGCAACGT
CGGCGGAGCAGGTTGAAGCAGACAGGCTGATTCGTGCCATGACGGCCGCA
GAGGGAATCAGGCAACAGCAGCAGCAGGCCGCAAGACTACCGCGTTCTTC
TTCTTTGCTGGCCCGAGACGGCGTCGTGACCGCCGCCGGTGCCGCCAGAA
GAAGGCCGGAAACAAGAGGGATTACCACCGGAAAACCCGCCGCATCAACG
GCGCCGGGCGATATCCGCGGCACCCTTATGTCTCCGTGGGCGGGGAGGAA
GGGCGGGGCTACACGAGCTGCGCGGAGGAGTAGCAGTTGCGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7044:6330..6722+

>mRNA_E_fasciculatus_S2_contig7044.15207.1 ID=mRNA_E_fasciculatus_S2_contig7044.15207.1|Name=mRNA_E_fasciculatus_S2_contig7044.15207.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7044:6330..6722+ (Ectocarpus fasciculatus EfasUO2)
GAGCTTGGAGATCGACAACCATCAAATACTGCTGGCACTGCTGCCGCTGA
TGGGGCAGCAAGCGGCATGGACACCACCGTCGGCCCCCCACCAGCAACGT
CGGCGGAGCAGGTTGAAGCAGACAGGCTGATTCGTGCCATGACGGCCGCA
GAGGGAATCAGGCAACAGCAGCAGCAGGCCGCAAGACTACCGCGTTCTTC
TTCTTTGCTGGCCCGAGACGGCGTCGTGACCGCCGCCGGTGCCGCCAGAA
GAAGGCCGGAAACAAGAGGGATTACCACCGGAAAACCCGCCGCATCAACG
GCGCCGGGCGATATCCGCGGCACCCTTATGTCTCCGTGGGCGGGGAGGAA
GGGCGGGGCTACACGAGCTGCGCGGAGGAGTAGCAGTTGCGGA
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