mRNA_E_fasciculatus_S2_contig7044.15206.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7044.15206.1
Unique NamemRNA_E_fasciculatus_S2_contig7044.15206.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7044.15206.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.870e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 2 
Query:    2 TRVMLVLDSANEKEHWLSAKNQVEAIVVPILERDRLDGLDPDEAATEQSRQRVKMQ 169
            TRVM VLDSANEKEHWLSAKNQVEAIVVPILER+RLDGLDPDEAATEQSRQRVKMQ
Sbjct:  159 TRVMSVLDSANEKEHWLSAKNQVEAIVVPILERERLDGLDPDEAATEQSRQRVKMQ 214
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7044.15206.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.870e-2496.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7044contigE_fasciculatus_S2_contig7044:3068..4398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size292
Hectar predicted targeting categoryother localisation
Exons3
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.5901253-UTR-E_fasciculatus_S2_contig7044:3067..30771696842364.5901253-UTR-E_fasciculatus_S2_contig7044:3067..3077Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7044 3068..3077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.6029284-CDS-E_fasciculatus_S2_contig7044:3077..31341696842364.6029284-CDS-E_fasciculatus_S2_contig7044:3077..3134Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7044 3078..3134 +
1696842364.6120174-CDS-E_fasciculatus_S2_contig7044:3688..37901696842364.6120174-CDS-E_fasciculatus_S2_contig7044:3688..3790Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7044 3689..3790 +
1696842364.620521-CDS-E_fasciculatus_S2_contig7044:4275..43981696842364.620521-CDS-E_fasciculatus_S2_contig7044:4275..4398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7044 4276..4398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7044.15206.1prot_E_fasciculatus_S2_contig7044.15206.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7044 3078..4398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7044.15206.1

>prot_E_fasciculatus_S2_contig7044.15206.1 ID=prot_E_fasciculatus_S2_contig7044.15206.1|Name=mRNA_E_fasciculatus_S2_contig7044.15206.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
MLVLDSANEKEHWLSAKNQVEAIVVPILERDRLDGLDPDEAATEQSRQRV
KMQESIFKMREALRQEHQNNEQQNLIRVAENLELTRELNLLRKK
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mRNA from alignment at E_fasciculatus_S2_contig7044:3068..4398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7044.15206.1 ID=mRNA_E_fasciculatus_S2_contig7044.15206.1|Name=mRNA_E_fasciculatus_S2_contig7044.15206.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1331bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7044:3068..4398+ (Ectocarpus fasciculatus EfasUO2)
GACGCGCGTGATGTTGGTCCTGGACTCTGCCAACGAGAAAGAGCACTGGC
TTTCCGCCAAAAACCAGGTGAGGACAACGATGGCAGCTTCGACGGTTTTC
CCAACCACGTGACAAAATGAATGTTGGGGAAAATAAATCTATCTAGCTGA
ATGAATTATTAATACTTCTTCACACACGTATTTGATCTGTCTGTCTGGGT
CAGTCGTCGTAGGTACGGTTGGTTGCAGTCACATGCACTTCGAACTTCCC
ATCGATATCTTGATTTTGTGATTCTGTTTTGAATGGGGCCATCGGGAGAC
GGAAAGTTAGTTTTTCGCCGTAAGGACCACGCAAGGAAGAAGAGACATGT
ATCGGGTGTGGAGGTCAGATCGCACTTAGTTGTCCAGTTTCCTTGATCAG
GCGTTGTCGATATGAGGCAAAGAGACGCAAATTTTGTATTTTGTGCATAG
GAATAGTGCATGAAGCCTGCTAAATACAACGGAGTCGGACACATATATAG
TATCCGAGGTTTGGGCGACAAACTCGAAAAATGCTAGGCAAGCTCCCAGC
AACCGTGCGAGGAGATGCAAGATGCAGGTGACACATTGACTGCATATATC
TGTACGTTGTGTGCTGCGCAGGTAGAAGCCATCGTCGTGCCAATTCTGGA
GAGAGACAGGCTTGATGGGCTTGACCCTGACGAAGCCGCCACGGAACAGT
CGCGCCAGCGGGTCAAGATGCAGGTGCGCCTCGCATGCATGTGTATGTGA
AATTGCTTCCTGTTTCTCGGTGGCATCGAGCGAGCTAACCGGCTTGTCGA
TCGATGAAACGACGTCGTTGCTCTCACACCGTCCGCGGGTTGTTGGAACA
AACGCTGTTTGATGACACGCCTTTCAACTCCTCCCCCCCTCCAGCGCGTG
CGTTCATGTTTTGAGCATTGACCACGTGGATCAGCCAGTCAAGTAGTAAG
CTTGGCCTCAGCCGGATATACACCAAAAGCGCTTCCTCTCCCTCTAGCCT
GATTTTCCGGCGTCGGAAACAGAATCAGCTTAACGCCGGTACTGTTTAAT
AAAACGACCGGCATGCCGTGCGTCGTTTGGCACATGTGTGTCACTGCATG
CTGGTATGAGGATAATTTAATTTTATATACTACGTCTGTCTCCCGTACTG
TTTTCCTTTTTCACTCCTCCTTGATGTCAACCGATTTTGCTTTTCTGCTT
CGAGCCAGGAGAGCATTTTCAAGATGAGAGAGGCCTTGCGGCAAGAGCAC
CAGAACAACGAACAGCAGAACCTCATCCGCGTCGCGGAGAACCTGGAGCT
GACTCGCGAGCTAAACCTCTTGCGAAAAAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7044:3068..4398+

>mRNA_E_fasciculatus_S2_contig7044.15206.1 ID=mRNA_E_fasciculatus_S2_contig7044.15206.1|Name=mRNA_E_fasciculatus_S2_contig7044.15206.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7044:3068..4398+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGGTCCTGGACTCTGCCAACGAGAAAGAGCACTGGCTTTCCGCCAA
AAACCAGGTAGAAGCCATCGTCGTGCCAATTCTGGAGAGAGACAGGCTTG
ATGGGCTTGACCCTGACGAAGCCGCCACGGAACAGTCGCGCCAGCGGGTC
AAGATGCAGGAGAGCATTTTCAAGATGAGAGAGGCCTTGCGGCAAGAGCA
CCAGAACAACGAACAGCAGAACCTCATCCGCGTCGCGGAGAACCTGGAGC
TGACTCGCGAGCTAAACCTCTTGCGAAAAAAG
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