mRNA_E_fasciculatus_S2_contig704.15202.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig704.15202.1
Unique NamemRNA_E_fasciculatus_S2_contig704.15202.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.050e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:   22 MADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAISNRARPAAA 222
            MADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAISNRARPAAA
Sbjct:    1 MADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAISNRARPAAA 67
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: SH3 (domain-containing protein 19 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QHF8_FUNHE)

HSP 1 Score: 67.8 bits (164), Expect = 1.590e-11
Identity = 27/59 (45.76%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   19 AMADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAI 195
            A++   C+ALFDY+G+  E+L+F QGD+I+L  +  GE WG G+++G+TG FP+N+  +
Sbjct:  464 AVSGPRCVALFDYEGEDDEELTFSQGDIIALLELV-GEEWGRGRIHGRTGLFPLNFAEV 521
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: Uncharacterized (protein n=2 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5LPK7_9TELE)

HSP 1 Score: 65.5 bits (158), Expect = 2.490e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   25 ADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAI 195
            A   C+ALFDY+G+  ++L+F QGDVI L  +  GE WG G+++G+TG FP+N++ +
Sbjct:    5 AGPRCVALFDYEGEDDDELTFSQGDVIGLLELV-GEEWGRGQIHGRTGIFPLNFMEV 60
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: SH3 (domain-containing protein 19 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165A84B0)

HSP 1 Score: 66.6 bits (161), Expect = 4.100e-11
Identity = 27/59 (45.76%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   19 AMADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAI 195
            A++   C+ALFDY+G+  E+L+F QGDVI+L  +  G+ WG G+++G+TG FP+N+  +
Sbjct:  807 AVSGPRCVALFDYEGEDDEELTFSQGDVIALLELV-GKEWGRGRIHGRTGLFPLNFAEV 864
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: Uncharacterized (protein n=12 Tax=Poeciliinae TaxID=586240 RepID=M3ZZ23_XIPMA)

HSP 1 Score: 66.2 bits (160), Expect = 5.600e-11
Identity = 27/59 (45.76%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   19 AMADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAI 195
            A++   C+ALFDY+G+  ++L+F QGDVI L  +  GE WG G+++G+TG FP+N++ +
Sbjct:  809 AVSGPRCVALFDYEGEDDDELTFSQGDVIGLLELV-GEEWGRGQIHGRTGIFPLNFMEV 866
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: SH3 (domain-containing protein 19-like n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8V086_CYNSE)

HSP 1 Score: 65.1 bits (157), Expect = 1.430e-10
Identity = 26/54 (48.15%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   37 CIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAIS 198
            C+ALFDY+G+ +++L+F QGD+ISL  +  G  WG G+++GKTG FP+N+  ++
Sbjct:  780 CVALFDYEGEEEDELTFSQGDIISLLELM-GTEWGRGQIHGKTGIFPLNFTDVT 832
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: SH3 (domain-containing protein 19-like n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB75967)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-10
Identity = 26/53 (49.06%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   37 CIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAI 195
            C+A+FDY+G+ +++L+F QGDVISL  +  GE WG G+++G+ G FP+N+V +
Sbjct:  868 CVAVFDYEGEEEDELTFSQGDVISLLELV-GEEWGRGQIHGRIGIFPLNFVEV 919
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: SH3 (domain-containing protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183MKL2_9TREM)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-10
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   34 TCIALFDYQGDGKEQLSFKQGDVISL-KRVPPGEGWGLGKLNGKTGWFPVNYVAISN 201
            +C ALFD++ + + +LSF +GD+ISL  RV   E W  G+LNG+ G+FPVNYV + N
Sbjct:   90 SCKALFDFEAENESELSFSEGDIISLILRVD--ENWFEGELNGRKGYFPVNYVEVIN 144
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WGF0_9CRUS)

HSP 1 Score: 62.8 bits (151), Expect = 2.430e-10
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   22 MADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYV 189
            M+ +   AL+ ++G   ++LSF+ GD I+L +  P EGW  G LNGKTGWFP NYV
Sbjct:    1 MSGKVVKALYPFKGTNNDELSFRSGDKITLTQQDP-EGWWEGTLNGKTGWFPCNYV 55
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BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Match: Uncharacterized (protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BN92_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 2.610e-10
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   37 CIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGWFPVNYVAISNRARPAA 219
            C+ALFDY+G+  ++L+F QGDVI+L+ +  G+ WG G+++G+ G FP+N+  +     P+A
Sbjct:  315 CVALFDYEGEEDDELTFSQGDVIALQELV-GQEWGRGQIHGRVGIFPLNFAQVVEPLPPSA 374
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig704.15202.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.050e-38100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4... [more]
SH31.590e-1145.76domain-containing protein 19 n=1 Tax=Fundulus hete... [more]
Uncharacterized2.490e-1147.37protein n=2 Tax=Xiphophorus couchianus TaxID=32473... [more]
SH34.100e-1145.76domain-containing protein 19 n=1 Tax=Fundulus hete... [more]
Uncharacterized5.600e-1145.76protein n=12 Tax=Poeciliinae TaxID=586240 RepID=M3... [more]
SH31.430e-1048.15domain-containing protein 19-like n=2 Tax=Cynoglos... [more]
SH31.960e-1049.06domain-containing protein 19-like n=1 Tax=Mugil ce... [more]
SH32.260e-1050.88domain-containing protein n=2 Tax=Schistosoma TaxI... [more]
Hypothetical2.430e-1050.00protein n=1 Tax=Cyprideis torosa TaxID=163714 RepI... [more]
Uncharacterized2.610e-1042.62protein n=1 Tax=Takifugu bimaculatus TaxID=433685 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig704contigE_fasciculatus_S2_contig704:6985..8865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score146.0
Seed ortholog evalue6.4e-33
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
Model size224
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
Cds size201
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.2043643-CDS-E_fasciculatus_S2_contig704:6984..70441696842364.2043643-CDS-E_fasciculatus_S2_contig704:6984..7044Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 6985..7044 -
1696842364.2170105-CDS-E_fasciculatus_S2_contig704:8259..83541696842364.2170105-CDS-E_fasciculatus_S2_contig704:8259..8354Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 8260..8354 -
1696842364.2276137-CDS-E_fasciculatus_S2_contig704:8798..88441696842364.2276137-CDS-E_fasciculatus_S2_contig704:8798..8844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 8799..8844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.2381039-UTR-E_fasciculatus_S2_contig704:8844..88651696842364.2381039-UTR-E_fasciculatus_S2_contig704:8844..8865Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig704 8845..8865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig704.15202.1prot_E_fasciculatus_S2_contig704.15202.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig704 6985..8844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig704.15202.1

>prot_E_fasciculatus_S2_contig704.15202.1 ID=prot_E_fasciculatus_S2_contig704.15202.1|Name=mRNA_E_fasciculatus_S2_contig704.15202.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
MADQTCIALFDYQGDGKEQLSFKQGDVISLKRVPPGEGWGLGKLNGKTGW
FPVNYVAISNRARPAAA
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mRNA from alignment at E_fasciculatus_S2_contig704:6985..8865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig704.15202.1 ID=mRNA_E_fasciculatus_S2_contig704.15202.1|Name=mRNA_E_fasciculatus_S2_contig704.15202.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1881bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:6985..8865- (Ectocarpus fasciculatus EfasUO2)
CGCGCTGCCCTTGCCTTCGCGATGGCTGACCAGACTTGCATTGCGCTGTT
CGACTACCAGGGTGACGGTAAGCAGCTGACGGGCAGAAGCTGTTGTGCGG
TATCCTCTCTCATGGGTACAAGTTATCGTTTGTGTCCCTGTCTGAGAGAG
AGACAGCGCTCTCCTTTCCGAGAGCGAGAGAGCTATTGTACCTGCCTCTT
TAGCCGCCGTGTTTCTTCAGCATGATGGTGTTCTGTGGCACACTACAAGG
TGTGATCGTCGACGTAGATCTGCGCTGGACCTGAACATAGTTACGGGCTG
TGAGTTGCAGCCAGCGTGTGGTACCACGCTACGTCCAAGGCCACCTACGC
GCCAGAATTCCTTTGCGTATGTATGTATGCGTACAGCAGTAGACTCTCCT
CTTCGATCGAACAAACGGGAAACGGCCGGATTGATGTCAATGTCAATGTT
ACATGCAATGCACGGTATACTAGCGCTCTCGACTCTGCTGCCTGCGTTGT
TGTTCGTGCAGGCAAGGAGCAGCTAAGCTTCAAGCAAGGAGATGTCATCA
GCTTGAAGCGTGTGCCCCCGGGAGAGGGATGGGGCTTGGGGAAGCTCAAC
GGGAAGGTGTGTGTGCTGACTTTATTGGTACCTCCGCGGGAGAAGGGAGT
GCGAATGATTCCGTCCGCATTTCTCCGCCCCCCACGCGCCGAACAATTGT
AAGCACATCCACACCCACCCAGGACAGACAACTAGCAGCATAGCAGACGG
GATGCTCTCCCGAACATGACTGGGGTGCTTTTTTGGCAGGGAAGGATAAT
GAGGAATCTACCGCAGTATTATAGTAGCTGCATTTTCGTACTGGGAACCG
TGGGCGGGAGGGGTGCGTCCCACCCGCTGGGAGAGCACGCGCCGCTTGGC
CGACTGCTGTGTTGCTGAACACTCCCCACATCGAACCTACCCTTGGACAC
AAGTGCAAAAAGGTTTTTCTGGGCTTGTTTCTGACTGCAGGAGTTTCTTG
GCGGTTGAAGTTGGATGGGGATATGGATGCAGACGGGTGACAGAATATTG
TGCTTTGTGCCGGCGACATACGCCACCAATGGCAAATGGCAATGCCGATG
CCCCCTATCTACTTGTACCGTCCCCAGAGAACAGCAGCATTGTATGCATG
CATAGACAAGCGTCGCGCGGTCGGGAATCGTTCTACAAACGCATATTTGT
ACTGTTGCCGCCACCTCTGCGCCGGTGCTTCACGACGGGCACACAGCAGT
CTCTTGCACAATCGGAAGGATTTGTATTCAAAGCACATGAGATGTATATG
TATATCCCCCCGCACCCACGTTTCAAAGACCAGCATCACACGGCAAGCAC
GAACACGGGCTATACACAGTATTGTAGCATAGACTACCCAAGAAGAGAAG
AGAAGGTGGTTGCGGCGATTTCTGCCCCGGTGTTTTGTGTTTTGTGGGGA
AACGGTCGCTCATCGCAAAAACAGTCAGTCGGGTTTTCTAGAAGTGGATG
TTGATAAGCACGCTGACCACTAGACCACTAGTCAGCGCTGACTCGTGGTC
TAGTGGTCATCGTGCTTATCAACTACTGTAAGCCATACCACCCAACAGTG
GACATATGCTCTGCCTCCAAGAGGTGCGGTACAAGCTTTCCGCTTACAAC
AGCAGTACCCTGGCGAGGTGTCTCAAAACTGCGTAGTAGCGCAGGCATGT
GGGCCGCCTGCCCACCCCATGCCCTGTTGCGCCCAGCTGAATGTTTCAAG
CCTAACGAACGACCCTCGCCACCGCCCCCATGGTTCCCTTCCTTTCTATC
CTACCACACCACCGTCCTCAGACCGGTTGGTTCCCCGTGAACTACGTGGC
GATATCCAACCGCGCAAGACCGGCAGCAGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig704:6985..8865-

>mRNA_E_fasciculatus_S2_contig704.15202.1 ID=mRNA_E_fasciculatus_S2_contig704.15202.1|Name=mRNA_E_fasciculatus_S2_contig704.15202.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:6985..8865- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGACCAGACTTGCATTGCGCTGTTCGACTACCAGGGTGACGGCAA
GGAGCAGCTAAGCTTCAAGCAAGGAGATGTCATCAGCTTGAAGCGTGTGC
CCCCGGGAGAGGGATGGGGCTTGGGGAAGCTCAACGGGAAGACCGGTTGG
TTCCCCGTGAACTACGTGGCGATATCCAACCGCGCAAGACCGGCAGCAGC
C
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