mRNA_E_fasciculatus_S2_contig704.15201.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig704.15201.1
Unique NamemRNA_E_fasciculatus_S2_contig704.15201.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig704.15201.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 8.620e-86
Identity = 144/150 (96.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    1 GLLLSAPSAGRASSQLFGGAKSLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQVSKSPIQRQLHRVLEECGESCSKFRVGVGDNQAFLMFLNGWVQKIRGLGVGELGMAPCGWVR 450
            GLLLSAPSAG+AS++LFGGA+SLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQVS+SPIQRQLHRVLEECGESCSKFRVGVGDNQAFLMFLNGWVQKIRGLGVG+LGMAPCGWVR
Sbjct:  357 GLLLSAPSAGKASTKLFGGARSLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQVSQSPIQRQLHRVLEECGESCSKFRVGVGDNQAFLMFLNGWVQKIRGLGVGDLGMAPCGWVR 506
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BLAST of mRNA_E_fasciculatus_S2_contig704.15201.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR5_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.130e-70
Identity = 124/150 (82.67%), Postives = 129/150 (86.00%), Query Frame = 1 
Query:    1 GLLLSAPSAGRASSQLFGGAKSLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQVSKSPIQRQLHRVLEECGESCSKFRVGVGDNQAFLMFLNGWVQKIRGLGVGELGMAPCGWVR 450
            GL LSAPSAG+AS++LFGGA+SLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQ S                   SKFRVGVGDNQAFLMFLNGWVQKIRGLGVG+LGMAPCGWVR
Sbjct:  220 GLPLSAPSAGKASNKLFGGARSLLRGMSTPVIGAGPLQGGPKLSWQTWAFADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQAS-----------------GVSKFRVGVGDNQAFLMFLNGWVQKIRGLGVGDLGMAPCGWVR 352
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig704.15201.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.620e-8696.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4... [more]
SH31.130e-7082.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig704contigE_fasciculatus_S2_contig704:2903..4737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score287.7
Seed ortholog evalue3.1e-75
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
Model size451
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
Cds size450
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.1326766-CDS-E_fasciculatus_S2_contig704:2902..29801696842364.1326766-CDS-E_fasciculatus_S2_contig704:2902..2980Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 2903..2980 -
1696842364.1471019-CDS-E_fasciculatus_S2_contig704:3659..37671696842364.1471019-CDS-E_fasciculatus_S2_contig704:3659..3767Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 3660..3767 -
1696842364.1584356-CDS-E_fasciculatus_S2_contig704:4053..42041696842364.1584356-CDS-E_fasciculatus_S2_contig704:4053..4204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 4054..4204 -
1696842364.1688063-CDS-E_fasciculatus_S2_contig704:4624..47371696842364.1688063-CDS-E_fasciculatus_S2_contig704:4624..4737Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 4625..4737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig704.15201.1prot_E_fasciculatus_S2_contig704.15201.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig704 2903..4737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig704.15201.1

>prot_E_fasciculatus_S2_contig704.15201.1 ID=prot_E_fasciculatus_S2_contig704.15201.1|Name=mRNA_E_fasciculatus_S2_contig704.15201.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=150bp
GLLLSAPSAGRASSQLFGGAKSLLRGMSTPVIGAGPLQGGPKLSWQTWAF
ADIMADAYMKKRTSEIPDLVALAASAAFVSKALGALSQVSKSPIQRQLHR
VLEECGESCSKFRVGVGDNQAFLMFLNGWVQKIRGLGVGELGMAPCGWVR
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mRNA from alignment at E_fasciculatus_S2_contig704:2903..4737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig704.15201.1 ID=mRNA_E_fasciculatus_S2_contig704.15201.1|Name=mRNA_E_fasciculatus_S2_contig704.15201.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1835bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:2903..4737- (Ectocarpus fasciculatus EfasUO2)
GGGCTGCTGCTGTCGGCGCCCTCGGCGGGGAGAGCGTCGAGCCAGCTTTT
CGGAGGGGCGAAGAGCTTGCTGAGAGGGATGTCCACCCCGGTGATTGGTG
CCGGCCCTTTACAGTGAGTGATGGCTCGTATAATAAATTGTACATGGTGG
AGGGATGGAAAACGGCTTGTGGTATAGATACGGTACAGGTGCCACGGGCG
AGAGATAGTTATAATTCGGGGTTCGTGCAGAGGTGGCGTAGCGCCGCGCT
AGTGGTCCCTAGTGGTACGAGCTGGCTTCGACAACGTTGCATGCGTTGAG
CATAGTAAATTTCGGTCTGATGTCGTTCCGGCCTATATACCGGGTCGCTG
ACGTTGTCGATTTTGGGACCGATTTTTTTTTTTCGATTTTGTAAGCCAGT
CCCCCGTCTTTTCGAGTCGGTGGCATCGACTATTTAGCTGCAGTCGGTTC
TTCATGCATTGACTCGCGAATCGCGTCGTTCGTTTGTTCGTGCGTTGATG
TGTACGGCATGACGTCACTCTTCCTTGTTGCAGAGGCGGTCCGAAGCTGT
CGTGGCAGACTTGGGCGTTTGCGGACATCATGGCAGACGCCTACATGAAG
AAGCGCACCAGCGAGATCCCGGACCTGGTGGCCCTGGCGGCTAGCGCGGC
CTTCGTGTCGAAAGCTCTCGGAGCCTTAAGCCAGGCAAGTGGTGGTTACT
ACTTGTGAGGACGGCATGTATGTTTATTTGTTGCGTTCTGCTGTTGTGGT
CAGGATGAGTCGCCTGTTCCGTTGCGCCGTCAGGACATTGGAAGTCGGGG
TCGTGGAGCCAACCACATGGGAAAAAAATTATGGATTTGTTTTATTTTAG
TTTTTGTGTGTTTCAAGAATGGTGGGTCGTCTTTATAGCGTTCCCGCTCT
GCTTGGCCGGAGAACCCCCTCGCCTTCGTCTCTTGTGTCTCTCGTGCCTG
TCTGTCGTTCTTGACTGCAGGTGTCGAAAAGTCCCATCCAGCGCCAGCTG
CACCGTGTCTTGGAGGAATGCGGCGAGAGCTGCAGCAAGTTCCGCGTGGG
TGTGGGAGACAATCAGGCGTTTCTCATGGTGAGGCAGCGCCGCGCAACCT
CTGCAGTTACAGCAGCAATGCATGAACCTACCTTTTTATGATTGCCAAAA
TGTTCATTTGCAAACGTATCTACGTGGTTGGTGGAACCGCAAGCCTGAAA
GTCTTCGAGACCTCATCGACCCTACTGTTGGTTGCTGTCGAGGCCGAACG
TTAAGCTTCCCCCTGAGTTTTCCTATGAACCTTACCTTACCTTACCTTAC
CTTACCTTACCTTACCTTACCTTACCGCAGGTTGAGTGCTATTGTAGGGG
GTATCTATCGTATGTTTTGTTTTGCAAGAGCGTGGAACCAACGTACGTCT
CTTGCCCATGGTGCGAAATGAAGAGTAGTACTTCTGGTTTATTTGTTGTT
TTCTGTTTGTGTTTTTTGCACTTCCAAGAGTTATCTTTTTGTCCGGCGAG
CGGCACTAACACACGGAGGTTTCACTTTCACGGGAAAGCAGGCCAACGTA
AGTCTTTCCTTGATGGGTCGGGCGGGGTCCCTTCTCGCGCCGTAGTGCAA
TCTGACTGGGAAAGTAGACGTGTTTGAAAGCATTTATTACGGTCAAACCC
TAGCCGTTCATCGGCAAGTGTGAAGGCGGCGGTGTTAATGAGACGCTCTT
TCGGACACCCCACCACTTGCTCTGCCAATCTCCCATCGTGTTCCGCCGCT
ATGATAGTTCCTCAACGGCTGGGTGCAGAAGATCAGGGGGCTCGGCGTGG
GGGAGCTAGGGATGGCGCCTTGCGGGTGGGTTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig704:2903..4737-

>mRNA_E_fasciculatus_S2_contig704.15201.1 ID=mRNA_E_fasciculatus_S2_contig704.15201.1|Name=mRNA_E_fasciculatus_S2_contig704.15201.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=450bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:2903..4737- (Ectocarpus fasciculatus EfasUO2)
GGGCTGCTGCTGTCGGCGCCCTCGGCGGGGAGAGCGTCGAGCCAGCTTTT
CGGAGGGGCGAAGAGCTTGCTGAGAGGGATGTCCACCCCGGTGATTGGTG
CCGGCCCTTTACAAGGCGGTCCGAAGCTGTCGTGGCAGACTTGGGCGTTT
GCGGACATCATGGCAGACGCCTACATGAAGAAGCGCACCAGCGAGATCCC
GGACCTGGTGGCCCTGGCGGCTAGCGCGGCCTTCGTGTCGAAAGCTCTCG
GAGCCTTAAGCCAGGTGTCGAAAAGTCCCATCCAGCGCCAGCTGCACCGT
GTCTTGGAGGAATGCGGCGAGAGCTGCAGCAAGTTCCGCGTGGGTGTGGG
AGACAATCAGGCGTTTCTCATGTTCCTCAACGGCTGGGTGCAGAAGATCA
GGGGGCTCGGCGTGGGGGAGCTAGGGATGGCGCCTTGCGGGTGGGTTCGG
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