mRNA_E_fasciculatus_S2_contig7032.15197.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z6_9PHAE) HSP 1 Score: 156 bits (395), Expect = 7.120e-45 Identity = 93/128 (72.66%), Postives = 101/128 (78.91%), Query Frame = -3
Query: 129 RLKTALDTHQLAGLLVPLLPSPGEGADDSTRVGAEEGERKEELSYAQQNQLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHTD 512
RL TAL T QL LLV + PS GE ADD TR E ERKEELS QQ +L HRAYVS+VVL+EEQKRDAKQLEL Q AKKVLS CE+PTEAEV EADA+R ELLNEA+LVRRDASL RIA K+L TD
Sbjct: 52 RLDTALATQQLVSLLVSVAPSLGEIADDGTRAETEGDERKEELSDKQQLRLCHRAYVSLVVLKEEQKRDAKQLELTQEAKKVLSDCEHPTEAEVMEADAKRFELLNEASLVRRDASLLRIAEKVLCTD 179
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE) HSP 1 Score: 101 bits (252), Expect = 6.940e-22 Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = -3
Query: 126 RLKTALDTHQLAGLLVPL-LPSPGEGADDSTRVGAEEGERKEELSYAQQN--QLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHTDP 512
RL+ AL T L LL+PL LPS +G + R AE+ + E A++ +L+ +AY S+ VL+EE++RD KQLEL + A +VLSGC++ T+A VKEADA R +LLNEA+LVR +ASL R+AAK+ + P
Sbjct: 133 RLQDALRTGHLPSLLLPLPLPSVEDGENAGDRTWAEDTGKPPEEKVAEKQIIRLWQQAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSP 264
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.180e-20 Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = -3
Query: 126 RLKTALDTHQLAGLLVPL-LPSPGEGADDSTRVGAEEGERKEELSYAQQN--QLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHTDP 512
RL+ T L LL+PL LPS +G + R AE+ + E A++ +L+ +AY S+ VL+EE++RD KQLEL + A +VLSGC++ T+A VKEADA R +LLNEA+LVR +ASL R+AAK+ + P
Sbjct: 180 RLQDTPRTGHLPSLLLPLPLPSVEDGENAGDRTWAEDTGKPPEEKVAEKQIIRLWQQAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSP 311
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D7_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.400e-18 Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = -3
Query: 117 NQLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHTDPTIG 368
N+L+ +AY S+ VL+EE++RD KQLEL + A +VLSGC++ T+A VKE DA+R +LLNEA+LVR +ASL RIAAK+ TIG
Sbjct: 31 NRLWQQAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKETDAKRFDLLNEASLVRHEASLLRIAAKVADKYLTIG 114
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV1_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 4.000e-17 Identity = 60/127 (47.24%), Postives = 83/127 (65.35%), Query Frame = -3
Query: 132 RLKTALDTHQLAGLLVPLLPSPGEGADDSTRVGAEEGERKEELSYAQQNQLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHT 512
RL+TAL ++LA LL+P+ PSP E +D+ GA K +S Q N+L+ + Y ++ VL E RD KQL L A +VL+G + T+A V+E +A+R ELLNEA+LVR DASL RIAA ++ T
Sbjct: 188 RLETALGENKLASLLIPVPPSPVEDGEDA---GAG---LKGNVSEKQINRLWQQGYCTLKVLVAELARDTKQLVLTVEANEVLAGSKGVTDAAVREGEAKRFELLNEASLVRYDASLLRIAANVVQT 308
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 3.480e-11 Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = -3
Query: 126 RLKTALDTHQLAGLLVPLLP---SPGEGADDSTRVGAEEGERKEELSYAQQNQLYHRAYVSMVVLEEEQKRDAKQLELMQGAKKVLSGCEYPTEAEVKEADARRSELLNEAALVRRDASLPRIAAKLLHTDP 512
RL+ AL T L LL+PL P GE A D T +E + Q N+L+ +AY S+ VL+EE+ D KQLE + A VLSGC++ +LLNEA+LVR +A L RIAAK+ P
Sbjct: 105 RLQDALRTGHLPSLLLPLPPPSVEDGENAGDRTWAEDTGKPPEETVPEKQINRLWQQAYSSLEVLKEERDSDVKQLECTRKANGVLSGCKF--------------DLLNEASLVRHEAPLLRIAAKVAGPSP 222 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7032.15197.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7032.15197.1 >prot_E_fasciculatus_S2_contig7032.15197.1 ID=prot_E_fasciculatus_S2_contig7032.15197.1|Name=mRNA_E_fasciculatus_S2_contig7032.15197.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp MIQSGSRASHHSSLNPPCFRKSLSHLRPVDALKTDCRVGVQQLRRDPRERback to top mRNA from alignment at E_fasciculatus_S2_contig7032:4226..4739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7032.15197.1 ID=mRNA_E_fasciculatus_S2_contig7032.15197.1|Name=mRNA_E_fasciculatus_S2_contig7032.15197.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=514bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7032:4226..4739+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7032:4226..4739+ >mRNA_E_fasciculatus_S2_contig7032.15197.1 ID=mRNA_E_fasciculatus_S2_contig7032.15197.1|Name=mRNA_E_fasciculatus_S2_contig7032.15197.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7032:4226..4739+ (Ectocarpus fasciculatus EfasUO2)back to top |