mRNA_E_fasciculatus_S2_contig7023.15186.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7023.15186.1
Unique NamemRNA_E_fasciculatus_S2_contig7023.15186.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7023.15186.1 vs.
Match: Bromo (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ67_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 7.670e-25
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 2 
Query:  317 QINELMATTPDELEQYQQIDRERLVTEAEMAREKGLRRWNRLMPADEAPAWLAPGAAA 490
            QINELMATT DELEQYQQIDRERLVTEAEMAREKGLRRWNRLMPADEAPAWLAPGAAA
Sbjct:  287 QINELMATTADELEQYQQIDRERLVTEAEMAREKGLRRWNRLMPADEAPAWLAPGAAA 344
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BLAST of mRNA_E_fasciculatus_S2_contig7023.15186.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.010e-10
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  377 RERLVTEAEMAREKGLRRWNRLMPADE--------APAWLAPGAAA 490
            +ERLVTEAEMAREKGLRRWNRLMPADE        APAWLAPGAAA
Sbjct:  240 KERLVTEAEMAREKGLRRWNRLMPADEVAKTIATTAPAWLAPGAAA 285
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7023.15186.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Bromo7.670e-2598.28domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized5.010e-1080.43protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7023contigE_fasciculatus_S2_contig7023:5094..6101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.1
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D8LJ67
Model size570
KEGG koko:K11647,ko:K11756,ko:K11757,ko:K11786,ko:K15192
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010959,GO:0016043,GO:0016462,GO:0016514,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0034756,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140097,GO:1900390,GO:1900393,GO:1900400,GO:1901265,GO:1901363,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.aortic smooth muscle cell differentiation
EggNOG OGsCOG0553@1,KOG0386@2759
Cds size402
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.6303298-CDS-E_fasciculatus_S2_contig7023:5093..52041696842362.6303298-CDS-E_fasciculatus_S2_contig7023:5093..5204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7023 5094..5204 -
1696842362.6540685-CDS-E_fasciculatus_S2_contig7023:5644..59351696842362.6540685-CDS-E_fasciculatus_S2_contig7023:5644..5935Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7023 5645..5935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.666673-UTR-E_fasciculatus_S2_contig7023:5935..61011696842362.666673-UTR-E_fasciculatus_S2_contig7023:5935..6101Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7023 5936..6101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7023.15186.1prot_E_fasciculatus_S2_contig7023.15186.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7023 5094..5935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7023.15186.1

>prot_E_fasciculatus_S2_contig7023.15186.1 ID=prot_E_fasciculatus_S2_contig7023.15186.1|Name=mRNA_E_fasciculatus_S2_contig7023.15186.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
MVNGWSSWRSPHTKTSVRSERDYVNDCTSNTKNLTRRATNAHVFIYFSFV
QINELMATTPDELEQYQQIDRERLVTEAEMAREKGLRRWNRLMPADEAPA
WLAPGAAAAAIAKAGGRGAAAAAAAAANEASGAG
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mRNA from alignment at E_fasciculatus_S2_contig7023:5094..6101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7023.15186.1 ID=mRNA_E_fasciculatus_S2_contig7023.15186.1|Name=mRNA_E_fasciculatus_S2_contig7023.15186.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1008bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7023:5094..6101- (Ectocarpus fasciculatus EfasUO2)
GCGTTGGTTTTCGTTTGTCGTTCTTGCACCTTCGAGTGCCACCCCACCCT
CTTCTAAATCTAACGACGACATTCGCGCGTAGATGCTAAGTTGCTCGGTG
TACCGGTCGCCAAACTATTGCCAGTGATGCGCGGATGATTGATCCGGCAG
ATCAACCAATAGCTGAATGGTCAATGGCTGGTCTAGTTGGCGTAGTCCAC
ATACCAAAACAAGCGTGCGTTCGGAGAGAGACTACGTAAATGATTGCACG
AGCAACACGAAAAACCTGACACGAAGGGCAACAAACGCCCACGTCTTTAT
ATATTTTTCATTTGTCCAGATCAACGAGCTCATGGCCACGACACCAGACG
AGCTGGAGCAGTACCAGCAGATCGACAGGGAGAGGCTGGTTACGGAGGCC
GAGATGGCGCGGGAGAAGGGGTTGAGGAGATGGAACAGGCTCATGCCTGC
GGACGAGGTGGGGTGACTAAAAATAATGCAACAACGCTGTAGGGTATGTC
ATCGCGGAGGGTTTATTTTGCGGGGGGCCCCGGTGGCGGCTCTATCTTGT
GTTGAGGCGGGACCTTTGGGAAATCGTGTTTGCGCAGGGAGCAAGTTGGG
GGACTATTAGTATTAAAATTATTAGATTTGAGGTAGGTAGATAGATTTAA
GGGGACTATTAGTATTAGTATTAGTGTTAGTATTAGTATTAATATTAATA
TATACGTGGTGTAGAGGTAGGTAGATAGGTTATTAGGGGAGAGACACGTG
GCCGGTAGTAGAGACGGGCGGGACAATTAAACTCACTCGAAACACGGATT
TAGCAAGAACCGCCTAAATCTCACCTACTCGTTACATACGCATGTGGTTT
CCTTCTCTGTCTGTATCCCCCTGCGCCCGCCCACGCATGGCGCGCAGGCT
CCTGCCTGGCTAGCACCTGGAGCCGCCGCCGCAGCCATTGCCAAGGCCGG
CGGGCGTGGCGCCGCCGCCGCCGCCGCTGCCGCGGCCAATGAGGCGTCGG
GGGCGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7023:5094..6101-

>mRNA_E_fasciculatus_S2_contig7023.15186.1 ID=mRNA_E_fasciculatus_S2_contig7023.15186.1|Name=mRNA_E_fasciculatus_S2_contig7023.15186.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7023:5094..6101- (Ectocarpus fasciculatus EfasUO2)
ATGGTCAATGGCTGGTCTAGTTGGCGTAGTCCACATACCAAAACAAGCGT
GCGTTCGGAGAGAGACTACGTAAATGATTGCACGAGCAACACGAAAAACC
TGACACGAAGGGCAACAAACGCCCACGTCTTTATATATTTTTCATTTGTC
CAGATCAACGAGCTCATGGCCACGACACCAGACGAGCTGGAGCAGTACCA
GCAGATCGACAGGGAGAGGCTGGTTACGGAGGCCGAGATGGCGCGGGAGA
AGGGGTTGAGGAGATGGAACAGGCTCATGCCTGCGGACGAGGCTCCTGCC
TGGCTAGCACCTGGAGCCGCCGCCGCAGCCATTGCCAAGGCCGGCGGGCG
TGGCGCCGCCGCCGCCGCCGCTGCCGCGGCCAATGAGGCGTCGGGGGCGG
GG
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