mRNA_E_fasciculatus_S2_contig7020.15183.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7020.15183.1
Unique NamemRNA_E_fasciculatus_S2_contig7020.15183.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7020.15183.1 vs.
Match: R3H (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.520e-37
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:   40 MATGRRQLEIFVRNAQDEYITTVTVHSSGGDGHSSPSSSSPAASDALPSRCVVEDYTRDASVMGTRAGGAGAVTLIAVRDADKLK 294
            MATGRRQ+EIFVRNAQDEYITTVT+HSSGGDGHS     SPAASDALP RCVVEDYTRDASVMGTRAGGA  VTL+AVR+ADKLK
Sbjct:    1 MATGRRQIEIFVRNAQDEYITTVTLHSSGGDGHSXXXXXSPAASDALPLRCVVEDYTRDASVMGTRAGGA--VTLVAVRNADKLK 83
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7020.15183.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R3H6.520e-3785.88domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7020contigE_fasciculatus_S2_contig7020:4698..6020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.2507632-CDS-E_fasciculatus_S2_contig7020:4697..47741696842362.2507632-CDS-E_fasciculatus_S2_contig7020:4697..4774Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 4698..4774 +
1696842362.2633433-CDS-E_fasciculatus_S2_contig7020:5417..55191696842362.2633433-CDS-E_fasciculatus_S2_contig7020:5417..5519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 5418..5519 +
1696842362.2728887-CDS-E_fasciculatus_S2_contig7020:5902..60201696842362.2728887-CDS-E_fasciculatus_S2_contig7020:5902..6020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 5903..6020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7020.15183.1prot_E_fasciculatus_S2_contig7020.15183.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7020 4698..6020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7020.15183.1

>prot_E_fasciculatus_S2_contig7020.15183.1 ID=prot_E_fasciculatus_S2_contig7020.15183.1|Name=mRNA_E_fasciculatus_S2_contig7020.15183.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
GVPTPPNKLSLRVMATGRRQLEIFVRNAQDEYITTVTVHSSGGDGHSSPS
SSSPAASDALPSRCVVEDYTRDASVMGTRAGGAGAVTLIAVRDADKLK*
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mRNA from alignment at E_fasciculatus_S2_contig7020:4698..6020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7020.15183.1 ID=mRNA_E_fasciculatus_S2_contig7020.15183.1|Name=mRNA_E_fasciculatus_S2_contig7020.15183.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7020:4698..6020+ (Ectocarpus fasciculatus EfasUO2)
GGCGTGCCAACTCCGCCCAACAAGCTTTCGTTGCGAGTTATGGCCACAGG
ACGACGACAGCTTGAAATATTTGTGAGGTTAGTAACACAAAGTCGCGTCC
GTCGCTGAATCCAGTGATCCACAGAGAGTGAGTGCGGTATGTAAACACAT
ACAACCATCGTCCCTGGCATTCATTTTTGCGTTGTCCTCTCTGTCCTCTC
TGTCCTCTCTGTCCTCTCTCCCTCTGTCTGTCTCTCCTCAACAAGAGGGC
AGAGTTCGTTCTTCGCTGCCCCTACAATACATAGTTCGATAGTGCCGCTG
ACCTCACCGCTCAGCCGCTACTACCACGTTGAAACGCTCTGTGTCTGTTG
TAGTGTGAAGCAAAGGATTGGTGTACAAACAGGGAAATGTTGATGTTCGA
TGTCGCAGCTAAACAGCAGCTTCATCAGCCGCAGTGACAGCAGTGACAGA
CAGCTGCATGTGCGGGGTACTTGGAGCTGTACCAGCATCTCGCTCCGCTC
CCTCTCTCTCATCTGTGTGTCTCTCTGTCTCTGTCTCCGTCTCTCTCTGC
CTCTCTCTGTCTCTTTGTCTCTGTCTCTGTCTCGCTCTCGCTCTCTCTCC
CGTCTGTTTCTATTTTGCACGCCCTACCCCGCCCCCGCTCTCTCTCGCCT
TTCTCCGCCGCGTTGTGCCCCCGCCCGCCTTTCCAACAATCGAATCCAAA
CGCTGCCGAAAAAAACCCAGGAACGCCCAAGACGAGTACATTACAACGGT
GACGGTTCATTCTAGTGGGGGAGACGGACACTCCTCCCCGTCGTCATCTT
CTCCTGCCGCCTCGGATGCACTGTAAGCGCTCCCCCTGCAGACAAAGAGG
CAGAGAGAACAGACGGTGGCGTGGAAGATGTTCCGCTCTCTCTCATGTGC
GGCAAGCTTGTGTGCGGTGTGATAAAACAGGTGCTGGGTCCCAACCTTGT
TTTTTAGAGGCGTGTTCGCTTTTTTATTGTCTTCCTGGTGCTCTTGTCGA
TGCCGCTGCGTGATAAGCACGTGGTGGGGCCTTGTTGTCGATGGACGGCC
AAGTACAAACACCAACACACGATACATGCAGTAGCTTGGTTCGTTGCGGC
GATGAAGCTCCGGGGCAAATTGACGACACCGCACAACTTGAGCTCGAATG
CGCCTCCCCGCTTCCAAACAAACGTTGGGTTGTCTACCCGCCCTCGCCAA
TTTAGGCCGTCGCGATGCGTGGTGGAGGACTACACCCGGGATGCCTCGGT
GATGGGAACGAGGGCGGGCGGCGCGGGGGCGGTGACGCTGATCGCGGTGC
GGGATGCGGACAAACTCAAGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7020:4698..6020+

>mRNA_E_fasciculatus_S2_contig7020.15183.1 ID=mRNA_E_fasciculatus_S2_contig7020.15183.1|Name=mRNA_E_fasciculatus_S2_contig7020.15183.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7020:4698..6020+ (Ectocarpus fasciculatus EfasUO2)
GGCGTGCCAACTCCGCCCAACAAGCTTTCGTTGCGAGTTATGGCCACAGG
ACGACGACAGCTTGAAATATTTGTGAGGAACGCCCAAGACGAGTACATTA
CAACGGTGACGGTTCATTCTAGTGGGGGAGACGGACACTCCTCCCCGTCG
TCATCTTCTCCTGCCGCCTCGGATGCACTGCCGTCGCGATGCGTGGTGGA
GGACTACACCCGGGATGCCTCGGTGATGGGAACGAGGGCGGGCGGCGCGG
GGGCGGTGACGCTGATCGCGGTGCGGGATGCGGACAAACTCAAGTAA
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