mRNA_E_fasciculatus_S2_contig7007.15166.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7007.15166.1
Unique NamemRNA_E_fasciculatus_S2_contig7007.15166.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7007.15166.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE7_9PHYC)

HSP 1 Score: 73.9 bits (180), Expect = 4.030e-15
Identity = 39/70 (55.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 PSCFPGFNFQSTRSHEAPSLPGVTRIHGRLDCTLPRIGF*DP*RGVRDPVVSERSH-PFRGGPADGLTST 207
            PSCFPGF+FQS RSHEA +LPGVTRIH  +DCTL  + F    R    P      H  FR GP DGLT +
Sbjct:   16 PSCFPGFDFQSARSHEARALPGVTRIHPGVDCTLSPMEFLRLFRNRFVPQSIAMVHRAFRHGPTDGLTKS 85
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7007.15166.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.030e-1555.71protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7007contigE_fasciculatus_S2_contig7007:366..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size254
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.6752853-UTR-E_fasciculatus_S2_contig7007:365..4991696842360.6752853-UTR-E_fasciculatus_S2_contig7007:365..499Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7007 366..499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.6942248-CDS-E_fasciculatus_S2_contig7007:499..6191696842360.6942248-CDS-E_fasciculatus_S2_contig7007:499..619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7007 500..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7007.15166.1prot_E_fasciculatus_S2_contig7007.15166.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7007 500..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7007.15166.1

>prot_E_fasciculatus_S2_contig7007.15166.1 ID=prot_E_fasciculatus_S2_contig7007.15166.1|Name=mRNA_E_fasciculatus_S2_contig7007.15166.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=40bp
PSCFPGFNFQSTRSHEAPSLPGVTRIHGRLDCTLPRIGF*
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mRNA from alignment at E_fasciculatus_S2_contig7007:366..619-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7007.15166.1 ID=mRNA_E_fasciculatus_S2_contig7007.15166.1|Name=mRNA_E_fasciculatus_S2_contig7007.15166.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=254bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7007:366..619- (Ectocarpus fasciculatus EfasUO2)
CCCTCGTGCTTCCCGGGCTTCAATTTTCAATCCACCCGATCACACGAGGC
TCCCTCTTTGCCCGGAGTTACCCGGATTCACGGAAGATTAGACTGTACAT
TGCCCCGCATAGGTTTTTGAGACCCTTAGCGAGGGGTTCGTGACCCAGTC
GTTAGCGAAAGGAGTCACCCCTTTCGAGGTGGTCCCGCCGACGGTCTGAC
CAGCACCCTGTTATGGGGACCAGCTTTGACAGAGTTCACGAACCTTGCCC
TGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7007:366..619-

>mRNA_E_fasciculatus_S2_contig7007.15166.1 ID=mRNA_E_fasciculatus_S2_contig7007.15166.1|Name=mRNA_E_fasciculatus_S2_contig7007.15166.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=120bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7007:366..619- (Ectocarpus fasciculatus EfasUO2)
CCCTCGTGCTTCCCGGGCTTCAATTTTCAATCCACCCGATCACACGAGGC
TCCCTCTTTGCCCGGAGTTACCCGGATTCACGGAAGATTAGACTGTACAT
TGCCCCGCATAGGTTTTTGA
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