mRNA_E_fasciculatus_S2_contig7006.15165.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7006.15165.1
Unique NamemRNA_E_fasciculatus_S2_contig7006.15165.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7006.15165.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI8_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 7.200e-54
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:    4 QYKPETKNEANLRDVRAEEEIKHVRHQGSLQQGRTEQVADTRTATQHILTQAATTDMNNFATNERIKSAKVAELEKKRAKLEKDEEKYRGFVNVAWMAFPVTIAVYVLTCCNVCLPELMKERKRNAKQKMDDVDAQLLALTNVNV 438
            Q + ET NEA LRDVRA EEI+HVR QG+LQ  RT Q +DTR ATQ+ILTQAA  DM     ++RIKSAKV +L+KK+ KLEKDEEK+RG  NVAWMAFPVT  V+V T     LPELMKERKRNA++K+++VDA+LLALTNVNV
Sbjct:    3 QQRAETNNEAKLRDVRAAEEIEHVRQQGNLQGSRTAQTSDTRNATQNILTQAANMDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFPVTAIVFVCTXXXXXLPELMKERKRNAQRKINEVDAELLALTNVNV 147
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BLAST of mRNA_E_fasciculatus_S2_contig7006.15165.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX07_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.430e-37
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:  127 RTATQHILTQAATTDMNNFATNERIKSAKVAELEKKRAKLEKDEEKYRGFVNVAWMAFPVTIAVYVLTCCNVCLPELMKERKRNAKQKMDDVDAQLLALTNVNV 438
            R  T  +  +AA TDM+    ++RIKS KV +LEKKR KLEKDEEKYRG VN AW+AFPVT+ VYVLTCC+ CLPELMKE+KRNA++K++ VDA+LLALTNVNV
Sbjct:  128 RLLTPEVQRKAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKEKKRNAQRKINVVDAELLALTNVNV 231
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BLAST of mRNA_E_fasciculatus_S2_contig7006.15165.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.150e-35
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 1 
Query:   16 ETKNEANLRDVRAEEEIKHVRHQGSLQQGRTEQVADTRTATQHILTQAATTDMNNFATNERIKSAKVAELEKKRAKLEKDEEKYRGFVNVAWMAFPVTIAVYVLTCCNVCLPELMKERKRNAKQKMDDVDAQLLALTNVNV 438
            ET NEA LR+VRA EEI+HVR Q +LQ  RT Q +DTR ATQ+ILTQAA  DM     ++RIKSAKV +L++K+ KL+KDE+K+RG  NVAW+AFPVT  V              +ER+RNA++K+++VDA+LL LTNVNV
Sbjct: 1600 ETNNEAKLRNVRAAEEIEHVRQQENLQGSRTAQTSDTRNATQNILTQAANMDMQMSIQHDRIKSAKVEQLQRKKEKLQKDEDKFRGLANVAWIAFPVTAIV-------------AEERERNAQRKINEVDAELLTLTNVNV 1727
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7006.15165.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.210e-6
Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:  130 TATQHILTQAATTDMNNFATNERIKSAKVAELEKKRAKLEKDEEKYRGFVNVAWMAFPVTIAVYVLTCCNVCLPELMKERKRNAKQKMDDVDAQLLALTNVNV 438
            T T  ILTQAA  DM     ++RIKSAKV +L++K+ KL                                      +ER+RNA++K+++VDA+LLALTNVNV
Sbjct:    8 TKTPDILTQAANMDMQMSIQHDRIKSAKVEQLQRKKEKL-------------------------------------AEERERNAQRKINEVDAELLALTNVNV 73
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7006.15165.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.200e-5466.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.430e-3767.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Integrase1.150e-3556.74catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized3.210e-637.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7006contigE_fasciculatus_S2_contig7006:5257..7026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size438
Hectar predicted targeting categoryother localisation
Exons3
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.6105874-CDS-E_fasciculatus_S2_contig7006:5256..53981696842360.6105874-CDS-E_fasciculatus_S2_contig7006:5256..5398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7006 5257..5398 +
1696842360.6216576-CDS-E_fasciculatus_S2_contig7006:6048..62691696842360.6216576-CDS-E_fasciculatus_S2_contig7006:6048..6269Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7006 6049..6269 +
1696842360.6324008-CDS-E_fasciculatus_S2_contig7006:6951..70261696842360.6324008-CDS-E_fasciculatus_S2_contig7006:6951..7026Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7006 6952..7026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7006.15165.1prot_E_fasciculatus_S2_contig7006.15165.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7006 5257..7026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7006.15165.1

>prot_E_fasciculatus_S2_contig7006.15165.1 ID=prot_E_fasciculatus_S2_contig7006.15165.1|Name=mRNA_E_fasciculatus_S2_contig7006.15165.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp
MQYKPETKNEANLRDVRAEEEIKHVRHQGSLQQGRTEQVADTRTATQHIL
TQAATTDMNNFATNERIKSAKVAELEKKRAKLEKDEEKYRGFVNVAWMAF
PVTIAVYVLTCCNVCLPELMKERKRNAKQKMDDVDAQLLALTNVNV
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mRNA from alignment at E_fasciculatus_S2_contig7006:5257..7026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7006.15165.1 ID=mRNA_E_fasciculatus_S2_contig7006.15165.1|Name=mRNA_E_fasciculatus_S2_contig7006.15165.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1770bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7006:5257..7026+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGTACAAGCCGGAGACCAAAAACGAGGCGAACCTCAGAGATGTTCG
TGCTGAGGAAGAGATCAAACACGTCCGGCACCAGGGGAGCCTTCAGCAAG
GTCGCACCGAACAGGTCGCAGACACGAGAACTGCAACGCAACGTGAGTGC
GTTACATCCAAGAAGCTCAGGTTTAATGGGGTCGGGCCATTTCGACTGCG
GGTTCCTTGCACGACTGTTGTCCGCATGGAGCCCGGAAACATCAAAATAT
TGATCAATATCTGCGGTTGCCTTTAGGCTTTACGGGGAGCGCCAACGAGT
GAAATCCCACCCCCTGAAACACGTGCAATATGAGTGCAGTTGAGAGTATA
ATTTTTCCAGGCGAGCAAGGTGAACGCAAGCAACACTTTCTCACCACCGG
ATTGAGCCCCGTTTTTGGTACCTATCGCAGCCATTTTAGGCGAGTCGGCA
CTGACCATCCCCTGGATAAACGCTTGAGGTGTATGTATTCCTGAGACCCG
GGGTACTCTTGCCCAGAGTAGTTGGACCCTGGAAACATTCTGCATGGTGT
ATGTGATGCATGAGAAAATGAAGCGAAACGTTCTTTGGCTGGATAGCAGT
GCTGGCGACGGGAGTCACTGTCCTTGGAGCGAGTTTGTCGAGTCATTCGG
ACCCTGCGACAACCGTTGAAGCCTGAGGTACAGTAGACTACAGTAGTCAG
CCTGACTACATAGTCTCTTGGTTTGTCCACAGCTGTGGAGTCACTGCTCG
ACCGCTAAGCTGACCCAACTCTCCGACGAAAAAATACTCCAGATATCCTC
ACCCAGGCGGCCACCACGGACATGAATAACTTCGCCACCAATGAGCGCAT
CAAGAGCGCTAAGGTGGCGGAGCTGGAGAAGAAGAGGGCAAAGCTGGAGA
AGGATGAGGAGAAGTACCGGGGGTTTGTGAACGTGGCGTGGATGGCGTTC
CCGGTGACGATAGCTGTGTACGTTCTCACCTGCTGCAATGTCTGCCTTCC
CGAGCTGATGAAGGTGTGCAAGCGCGGAAAGTTGTTGCTCGTTTCATGGA
TCACAGGCAGGCATATTGCGTGGTTTGGATTCACTCGCATATAAAATGAG
TTGCACGGGTTCTTGTTGAGGCGTTCGAACTCCAAAATCCCACGGGCAGA
ACGTCTTCTTCTGGTGTGGCTCAAGATTTGGTGCTCACCTAACACTATAG
CTTCTGTCAATGCGGTCGATTCCTGGCTCGAATGTTTTCATTTCTTGGTC
GAGATACCATGAAATCACCGAGTTTTTGATTCCATCGTCACTCTTGCAAC
CTCCAGCTGGTACCAACTCCTTGCGGTTCGTCTATCGCTGATATCTGCGC
TTCCACTTCGACGTCCTGCAAAGAATTTCATTTGAGTATATCGTTCCTGT
GTGTTGCCAAGGACCGCATTCCAAAAATTGTGTCAAGTATTGTGTTGCCC
GGGACTATGTAAGGTAGATACAGTCGATCAGTGCTGATATGTGTGTACGG
TTTCTCGATCCCGAAGCCATCAAAATTGAGAGTTATGACTACCATAGGGG
GAAAAGCGTCGTTCTCATCACCATCGTAACGCTGTGAGCTCTGTGTAAAG
TCCTCCCTCGATCTGGCTGGTTTGTGTGTGAATATTTCACTCTCGAAGCT
TTTGGTTCTTGTTTGTGCTAACGCCTGGTGCTCGCCTTTTCACAGGAGAG
GAAGAGGAACGCCAAGCAGAAAATGGACGACGTGGACGCCCAGCTCCTGG
CCCTCACCAACGTCAATGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7006:5257..7026+

>mRNA_E_fasciculatus_S2_contig7006.15165.1 ID=mRNA_E_fasciculatus_S2_contig7006.15165.1|Name=mRNA_E_fasciculatus_S2_contig7006.15165.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7006:5257..7026+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGTACAAGCCGGAGACCAAAAACGAGGCGAACCTCAGAGATGTTCG
TGCTGAGGAAGAGATCAAACACGTCCGGCACCAGGGGAGCCTTCAGCAAG
GTCGCACCGAACAGGTCGCAGACACGAGAACTGCAACGCAACATATCCTC
ACCCAGGCGGCCACCACGGACATGAATAACTTCGCCACCAATGAGCGCAT
CAAGAGCGCTAAGGTGGCGGAGCTGGAGAAGAAGAGGGCAAAGCTGGAGA
AGGATGAGGAGAAGTACCGGGGGTTTGTGAACGTGGCGTGGATGGCGTTC
CCGGTGACGATAGCTGTGTACGTTCTCACCTGCTGCAATGTCTGCCTTCC
CGAGCTGATGAAGGAGAGGAAGAGGAACGCCAAGCAGAAAATGGACGACG
TGGACGCCCAGCTCCTGGCCCTCACCAACGTCAATGTC
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