mRNA_E_fasciculatus_S2_contig7005.15164.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Similar (to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI) HSP 1 Score: 229 bits (584), Expect = 4.730e-69 Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
+QSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQ GDGGGGAFAEALLYATPDDELEV
Sbjct: 388 LQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEV 498
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R4_9PHAE) HSP 1 Score: 162 bits (409), Expect = 4.330e-47 Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 1
Query: 97 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQ WGAGGGAGHFKGGQ GDGGGGAFAEALLY TPDDELEV
Sbjct: 1 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQVWGAGGGAGHFKGGQSGDGGGGAFAEALLYVTPDDELEV 82
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK2_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.940e-33 Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
+Q EEER++HE E+C R++ C W GC A R H ++H++ +G+ YTVPG Y +KVP G + LK+Q WG GGG+GH K G GGGGAF +ALL DD LE+
Sbjct: 10 LQCEEERLEHEQEMCEFRIVRCTWQGCASCFPAYKRSEHRQQHIIASGIITYTVPGLYQYKVPSGTKQLKIQLWGGGGGSGHLKQQVSGQGGGGAFVDALLNVQTDDVLEI 120
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Z3_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.730e-26 Identity = 57/111 (51.35%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVW-AGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELE 339
+QSEEER+DHE LC +RL+ C W GC M+MAK+RR H + H+ RTGVF++TV G TF VP R LK+Q WG GGG+GH A+ E LL TP ELE
Sbjct: 286 LQSEEERLDHEQNLCANRLVRCDWPGGCVAMIMAKNRRKHRQLHIQRTGVFVFTVAGTSTFVVPESTRQLKLQCWGGGGGSGHLYDRIGXXXXXXAYVEGLLLVTPGGELE 396
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W578_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.730e-25 Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
E+ER HE E CP+R++ C+W GC+E +MAKDR+ H + H+ +G+ + G + + VP C+ +KVQAWGAGGG+G G ++G GGGGAFAEA+ P + L +
Sbjct: 995 EQERTWHELEECPNRIVSCMWPGCQEEMMAKDRKLHRKNHLCASGIVTFKTNGSFEYVVPKDCKYIKVQAWGAGGGSGVLHGYKFGHGGGGAFAEAICPVHPGETLYI 1102
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY24_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.210e-21 Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
++ E +R HE E CP R++ C+W GC+E ++AK+R+ H H+ +G+ + G Y F VP + +KVQAWGAGGG+G G ++G GGGGAF E + P + L
Sbjct: 1238 LELEHDRSWHEAEDCPLRIVKCMWPGCQETMLAKERKLHRRTHLCASGITTFKTAGNYDFVVPKEVKHIKVQAWGAGGGSGVLHGFKFGHGGGGAFVEGICPVHPGETL 1346
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRR5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.250e-21 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKG 264
++ EE+R++HE E+CP R++ C GC V A DR H H++R G+ L+ VPG Y +KV G R LKVQ WG GG +GH KG
Sbjct: 31 LKCEEDRLEHEQEMCPRRMVRCHVKGCAATVRAMDRPRHRRLHMLRGGIALHCVPGAYEYKVAMGLRQLKVQLWGGGGASGHLKG 115
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDW1_PYTIN) HSP 1 Score: 89.4 bits (220), Expect = 2.100e-18 Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
E++R HE + C R + C W C +++A+DR +H H++ +G+ + + ++VP + LK+QAWGAGGGAGH +G G GGGGAF EA+ P + L
Sbjct: 1309 EQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETL 1414
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BET2_PYTIN) HSP 1 Score: 89.4 bits (220), Expect = 2.130e-18 Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
E++R HE + C R + C W C +++A+DR +H H++ +G+ + + ++VP + LK+QAWGAGGGAGH +G G GGGGAF EA+ P + L
Sbjct: 2405 EQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETL 2510
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3R6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 8.850e-10 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVV 144
+Q EEER++HE E+C RL C W GC M +AKDRR+H ++H++
Sbjct: 188 LQMEEERLEHEEEMCERRLCRCTWKGCNAMTLAKDRRAHRKKHII 232 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7005.15164.1 >prot_E_fasciculatus_S2_contig7005.15164.1 ID=prot_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp MIHVQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTback to top mRNA from alignment at E_fasciculatus_S2_contig7005:7162..7777- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7005.15164.1 ID=mRNA_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=616bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:7162..7777- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7005:7162..7777- >mRNA_E_fasciculatus_S2_contig7005.15164.1 ID=mRNA_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:7162..7777- (Ectocarpus fasciculatus EfasUO2)back to top |