mRNA_E_fasciculatus_S2_contig7005.15164.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7005.15164.1
Unique NamemRNA_E_fasciculatus_S2_contig7005.15164.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Similar (to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 4.730e-69
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
            +QSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQ GDGGGGAFAEALLYATPDDELEV
Sbjct:  388 LQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEV 498          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R4_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.330e-47
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 1
Query:   97 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
            MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQ WGAGGGAGHFKGGQ GDGGGGAFAEALLY TPDDELEV
Sbjct:    1 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQVWGAGGGAGHFKGGQSGDGGGGAFAEALLYVTPDDELEV 82          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.940e-33
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
            +Q EEER++HE E+C  R++ C W GC     A  R  H ++H++ +G+  YTVPG Y +KVP G + LK+Q WG GGG+GH K    G GGGGAF +ALL    DD LE+
Sbjct:   10 LQCEEERLEHEQEMCEFRIVRCTWQGCASCFPAYKRSEHRQQHIIASGIITYTVPGLYQYKVPSGTKQLKIQLWGGGGGSGHLKQQVSGQGGGGAFVDALLNVQTDDVLEI 120          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Z3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.730e-26
Identity = 57/111 (51.35%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVW-AGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELE 339
            +QSEEER+DHE  LC +RL+ C W  GC  M+MAK+RR H + H+ RTGVF++TV G  TF VP   R LK+Q WG GGG+GH            A+ E LL  TP  ELE
Sbjct:  286 LQSEEERLDHEQNLCANRLVRCDWPGGCVAMIMAKNRRKHRQLHIQRTGVFVFTVAGTSTFVVPESTRQLKLQCWGGGGGSGHLYDRIGXXXXXXAYVEGLLLVTPGGELE 396          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W578_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.730e-25
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDELEV 342
            E+ER  HE E CP+R++ C+W GC+E +MAKDR+ H + H+  +G+  +   G + + VP  C+ +KVQAWGAGGG+G   G ++G GGGGAFAEA+    P + L +
Sbjct:  995 EQERTWHELEECPNRIVSCMWPGCQEEMMAKDRKLHRKNHLCASGIVTFKTNGSFEYVVPKDCKYIKVQAWGAGGGSGVLHGYKFGHGGGGAFAEAICPVHPGETLYI 1102          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY24_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.210e-21
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
            ++ E +R  HE E CP R++ C+W GC+E ++AK+R+ H   H+  +G+  +   G Y F VP   + +KVQAWGAGGG+G   G ++G GGGGAF E +    P + L
Sbjct: 1238 LELEHDRSWHEAEDCPLRIVKCMWPGCQETMLAKERKLHRRTHLCASGITTFKTAGNYDFVVPKEVKHIKVQAWGAGGGSGVLHGFKFGHGGGGAFVEGICPVHPGETL 1346          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRR5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.250e-21
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKG 264
            ++ EE+R++HE E+CP R++ C   GC   V A DR  H   H++R G+ L+ VPG Y +KV  G R LKVQ WG GG +GH KG
Sbjct:   31 LKCEEDRLEHEQEMCPRRMVRCHVKGCAATVRAMDRPRHRRLHMLRGGIALHCVPGAYEYKVAMGLRQLKVQLWGGGGASGHLKG 115          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDW1_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.100e-18
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
            E++R  HE + C  R + C W  C  +++A+DR +H   H++ +G+  +     + ++VP   + LK+QAWGAGGGAGH +G   G GGGGAF EA+    P + L
Sbjct: 1309 EQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETL 1414          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BET2_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.130e-18
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   19 EEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFAEALLYATPDDEL 336
            E++R  HE + C  R + C W  C  +++A+DR +H   H++ +G+  +     + ++VP   + LK+QAWGAGGGAGH +G   G GGGGAF EA+    P + L
Sbjct: 2405 EQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETL 2510          
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3R6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.850e-10
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   10 VQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVV 144
            +Q EEER++HE E+C  RL  C W GC  M +AKDRR+H ++H++
Sbjct:  188 LQMEEERLEHEEEMCERRLCRCTWKGCNAMTLAKDRRAHRKKHII 232          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7005.15164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Similar4.730e-6998.20to TNF receptor associated factor 4 n=1 Tax=Ectoca... [more]
Uncharacterized4.330e-4796.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.940e-3348.65protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical1.730e-2651.35protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Uncharacterized2.730e-2546.30protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.210e-2142.20protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]
Hypothetical2.250e-2148.24protein (Fragment) n=1 Tax=Pelagomonas calceolata ... [more]
Uncharacterized2.100e-1839.62protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized2.130e-1839.62protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Hypothetical8.850e-1051.11protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7005contigE_fasciculatus_S2_contig7005:7162..7777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.4
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog157072.XP_008870881.1
Model size342
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size342
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.5676208-CDS-E_fasciculatus_S2_contig7005:7161..73111696842360.5676208-CDS-E_fasciculatus_S2_contig7005:7161..7311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7005 7162..7311 -
1696842360.5798671-CDS-E_fasciculatus_S2_contig7005:7585..77771696842360.5798671-CDS-E_fasciculatus_S2_contig7005:7585..7777Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7005 7586..7777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7005.15164.1prot_E_fasciculatus_S2_contig7005.15164.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7005 7162..7777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7005.15164.1

>prot_E_fasciculatus_S2_contig7005.15164.1 ID=prot_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MIHVQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRT
GVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQYGDGGGGAFA
EALLYATPDDELEV
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mRNA from alignment at E_fasciculatus_S2_contig7005:7162..7777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7005.15164.1 ID=mRNA_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=616bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:7162..7777- (Ectocarpus fasciculatus EfasUO2)
ATGATACACGTACAGTCCGAAGAGGAACGAATCGACCACGAACACGAGCT ATGCCCGCACCGCCTGCTGCACTGCGTGTGGGCGGGCTGTGAGGAGATGG TGATGGCCAAAGACCGGAGGAGTCACAGCGAGGAGCACGTTGTCAGGACC GGCGTGTTCCTCTACACTGTCCCCGGGAAGTACACCTTCAAGGTGAGGCG AGAGTTTGTCCAAACGGGCCATGTGCGGATGCAATGTTGAACAGAACATC GGTAGTCCGCCGTAGTTTTCTTTTGGGATTTCTGTCGGGATAGACCGCAC TGTCCGCCAGAATCTTGGGGTGGAGGACTGGCATCGACGAAGTCTCCCGT CCAACCTGCCAATAGAGTGCTAACGCGATCCCTCGCCCTGCCCCCACTAA AACGCCAAACCACCCTACGAATATTTGCATTCCCCAAGACTCATTTGTGT CCTAACTCTCGCGCAGGTGCCCCACGGGTGCCGGAGCCTGAAGGTCCAGG CCTGGGGCGCCGGCGGGGGCGCCGGGCACTTCAAGGGGGGCCAGTACGGG GATGGTGGGGGTGGGGCTTTCGCAGAGGCCCTGCTGTACGCCACGCCCGA TGACGAGCTCGAGGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7005:7162..7777-

>mRNA_E_fasciculatus_S2_contig7005.15164.1 ID=mRNA_E_fasciculatus_S2_contig7005.15164.1|Name=mRNA_E_fasciculatus_S2_contig7005.15164.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:7162..7777- (Ectocarpus fasciculatus EfasUO2)
ATGATACACGTACAGTCCGAAGAGGAACGAATCGACCACGAACACGAGCT
ATGCCCGCACCGCCTGCTGCACTGCGTGTGGGCGGGCTGTGAGGAGATGG
TGATGGCCAAAGACCGGAGGAGTCACAGCGAGGAGCACGTTGTCAGGACC
GGCGTGTTCCTCTACACTGTCCCCGGGAAGTACACCTTCAAGGTGCCCCA
CGGGTGCCGGAGCCTGAAGGTCCAGGCCTGGGGCGCCGGCGGGGGCGCCG
GGCACTTCAAGGGGGGCCAGTACGGGGATGGTGGGGGTGGGGCTTTCGCA
GAGGCCCTGCTGTACGCCACGCCCGATGACGAGCTCGAGGTA
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