mRNA_E_fasciculatus_S2_contig700.15156.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig700.15156.1
Unique NamemRNA_E_fasciculatus_S2_contig700.15156.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig700.15156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L932_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 1.900e-98
Identity = 259/395 (65.57%), Postives = 267/395 (67.59%), Query Frame = 1 
Query:    1 KQQQQREPAAAATASVTA-----RGPSHSSAAPGAGQTAGNGEGKTTPVLVLESQQETASSRSAGGRPAGPSKSSATDGQRPRMTDLSAYQAPTGPDPKETRPSATARSHLSPYHGPATTQARGGRGXXXXXAHRNDLSAYQPPSSATSSASGAAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRTDLSAYQXSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTHASGVPPKMKEGQNGSAAGMKTTDVLGSKVASGALSGRPGQHQPQWKQQSHAQPAGGAKPRAGTQQHQQPKTAAVQATAGGTKSSAGEAKKVGGAPSQQ 1170
            K QQQREPAAA TA+ TA     RGPS +SAAPGAGQT G GEGKTTP L LE+QQET  SRSAGGRPAGP+KSSATDGQRP+MTDLSAYQAPTG  PKETR SAT RSH+SPYHGPATTQARGGRGXXXXX +RNDL AYQPPSS        AARAXXX     XXXXXXX     X X  XXXXXPRTDLSAYQ SP  XXXXXXXXXXXXXXX                                                                            SGT ASGVPPKMKEGQNGSAAGMKT DVLGSK ASGALSG PGQ QPQWKQQSHAQPAGGAKPRAGTQ +QQPKTAAVQATAGGTKSSA EAKKVGGAPSQQ
Sbjct: 1848 KPQQQREPAAA-TATATAXXXXXRGPSQTSAAPGAGQTPGAGEGKTTPGLALENQQETGPSRSAGGRPAGPAKSSATDGQRPQMTDLSAYQAPTGQGPKETRVSATTRSHMSPYHGPATTQARGGRGXXXXXXYRNDLPAYQPPSSXXXXXXXXAARAXXXQRTDLXXXXXXXTASGAXGXGGXXXXXPRTDLSAYQSSPAGXXXXXXXXXXXXXXXGVGSPYQPSSGANQSSPALTGTAGPQGRSSHATGAGNNGAGKVPGSRHGAHETRSAGSTGGVGNGGATSAVPRGGRSGTLASGVPPKMKEGQNGSAAGMKTADVLGSKAASGALSGGPGQQQPQWKQQSHAQPAGGAKPRAGTQHYQQPKTAAVQATAGGTKSSAVEAKKVGGAPSQQ 2241
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BLAST of mRNA_E_fasciculatus_S2_contig700.15156.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.170e-7
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:   68 IVLLRPVQAKLPVTVRARRHRSSCSKASRRRLHLAALGDAPPALRNLPQPMGNARE 235
            I LL   +AK PV VRAR+HR+SCS+ SRRR HLAALGDAPPA         NARE
Sbjct:  439 IPLLSDTEAKPPVPVRARQHRASCSRTSRRRPHLAALGDAPPAXXXXXXXXXNARE 494
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig700.15156.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.900e-9865.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.170e-762.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig700contigE_fasciculatus_S2_contig700:13430..14741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size1312
Hectar predicted targeting categoryother localisation
Exons1
Cds size1311
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842359.805711-CDS-E_fasciculatus_S2_contig700:13429..147401696842359.805711-CDS-E_fasciculatus_S2_contig700:13429..14740Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig700 13430..14740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig700.15156.1prot_E_fasciculatus_S2_contig700.15156.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig700 13430..14740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig700.15156.1

>prot_E_fasciculatus_S2_contig700.15156.1 ID=prot_E_fasciculatus_S2_contig700.15156.1|Name=mRNA_E_fasciculatus_S2_contig700.15156.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=437bp
KQQQQREPAAAATASVTARGPSHSSAAPGAGQTAGNGEGKTTPVLVLESQ
QETASSRSAGGRPAGPSKSSATDGQRPRMTDLSAYQAPTGPDPKETRPSA
TARSHLSPYHGPATTQARGGRGGGGGGAHRNDLSAYQPPSSATSSASGAA
ARAGGAQRTDLSTYQPPSAASGAAGSGGRRPGGPRTDLSAYQPSPAGGSP
AQGGRRPGAARTGVGSPYQPSSGANQSSPALTGGAGPQGRSSHATGAGNN
GAGKVPVSRHAGHEMRSAGSMGGVGNGGATSAVPRGGGSGTHASGVPPKM
KEGQNGSAAGMKTTDVLGSKVASGALSGRPGQHQPQWKQQSHAQPAGGAK
PRAGTQQHQQPKTAAVQATAGGTKSSAGEAKKVGGAPSQQQQPQQYQTQQ
GQEQYQYQQLQYSYPQQVSQTPAAASGGSVYVSYIQQ
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mRNA from alignment at E_fasciculatus_S2_contig700:13430..14741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig700.15156.1 ID=mRNA_E_fasciculatus_S2_contig700.15156.1|Name=mRNA_E_fasciculatus_S2_contig700.15156.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig700:13430..14741+ (Ectocarpus fasciculatus EfasUO2)
AAGCAACAGCAGCAGCGCGAACCGGCAGCCGCCGCCACCGCTTCTGTCAC
TGCTCGTGGTCCAAGCCATAGTTCTGCTGCGCCCGGTGCAGGCCAAACTG
CCGGTAACGGTGAGGGCAAGACGACACCGGTCCTCGTGCTCGAAAGCCAG
CAGGAGACGGCTTCATCTCGCAGCGCTGGGGGACGCCCCGCCGGCCCTTC
GAAATCTTCCGCAACCGATGGGCAACGCCCGCGAATGACGGATCTCTCCG
CTTACCAAGCCCCCACTGGTCCTGACCCGAAAGAGACTCGACCAAGTGCC
ACCGCAAGATCGCACTTGTCCCCGTACCATGGGCCCGCCACCACTCAGGC
ACGTGGTGGCCGGGGCGGTGGCGGCGGCGGGGCGCACCGGAACGACCTGT
CGGCGTACCAGCCGCCGTCCTCCGCTACATCCTCAGCGAGCGGTGCCGCA
GCGCGAGCGGGTGGTGCTCAAAGGACTGACCTGTCGACGTACCAACCTCC
GAGTGCGGCTTCGGGTGCCGCTGGCAGTGGTGGAAGACGTCCGGGGGGAC
CTCGGACGGACCTCTCCGCGTACCAGCCCTCCCCGGCCGGGGGTTCTCCG
GCTCAAGGAGGGAGGCGGCCAGGAGCGGCCAGGACTGGTGTTGGCTCACC
GTACCAACCGTCTAGCGGTGCCAATCAGTCGTCGCCTGCCCTGACCGGCG
GTGCAGGGCCGCAGGGAAGGTCGAGCCATGCCACTGGGGCGGGAAATAAT
GGCGCTGGGAAAGTGCCAGTGTCCCGTCACGCTGGCCACGAGATGCGATC
TGCCGGCAGCATGGGCGGTGTAGGCAATGGCGGCGCCACGTCGGCCGTGC
CTCGTGGTGGGGGATCTGGAACTCACGCGTCTGGTGTCCCTCCCAAGATG
AAGGAAGGGCAAAATGGAAGCGCAGCTGGAATGAAGACTACAGATGTTTT
GGGGTCAAAGGTGGCCAGCGGAGCCCTGAGCGGCCGGCCGGGCCAACATC
AGCCTCAGTGGAAGCAGCAATCTCACGCTCAGCCTGCAGGAGGCGCAAAG
CCGCGCGCTGGCACTCAACAGCACCAGCAGCCAAAGACGGCAGCGGTGCA
GGCGACGGCCGGGGGAACGAAATCGAGCGCGGGAGAGGCGAAGAAAGTGG
GAGGTGCTCCCAGTCAACAGCAACAGCCACAGCAATATCAAACGCAACAA
GGGCAAGAGCAGTACCAGTACCAACAGTTGCAGTACTCGTACCCGCAGCA
GGTATCCCAAACGCCGGCGGCAGCGAGCGGCGGCAGCGTGTATGTCTCTT
ACATCCAACAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig700:13430..14741+

>mRNA_E_fasciculatus_S2_contig700.15156.1 ID=mRNA_E_fasciculatus_S2_contig700.15156.1|Name=mRNA_E_fasciculatus_S2_contig700.15156.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1311bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig700:13430..14741+ (Ectocarpus fasciculatus EfasUO2)
AAGCAACAGCAGCAGCGCGAACCGGCAGCCGCCGCCACCGCTTCTGTCAC
TGCTCGTGGTCCAAGCCATAGTTCTGCTGCGCCCGGTGCAGGCCAAACTG
CCGGTAACGGTGAGGGCAAGACGACACCGGTCCTCGTGCTCGAAAGCCAG
CAGGAGACGGCTTCATCTCGCAGCGCTGGGGGACGCCCCGCCGGCCCTTC
GAAATCTTCCGCAACCGATGGGCAACGCCCGCGAATGACGGATCTCTCCG
CTTACCAAGCCCCCACTGGTCCTGACCCGAAAGAGACTCGACCAAGTGCC
ACCGCAAGATCGCACTTGTCCCCGTACCATGGGCCCGCCACCACTCAGGC
ACGTGGTGGCCGGGGCGGTGGCGGCGGCGGGGCGCACCGGAACGACCTGT
CGGCGTACCAGCCGCCGTCCTCCGCTACATCCTCAGCGAGCGGTGCCGCA
GCGCGAGCGGGTGGTGCTCAAAGGACTGACCTGTCGACGTACCAACCTCC
GAGTGCGGCTTCGGGTGCCGCTGGCAGTGGTGGAAGACGTCCGGGGGGAC
CTCGGACGGACCTCTCCGCGTACCAGCCCTCCCCGGCCGGGGGTTCTCCG
GCTCAAGGAGGGAGGCGGCCAGGAGCGGCCAGGACTGGTGTTGGCTCACC
GTACCAACCGTCTAGCGGTGCCAATCAGTCGTCGCCTGCCCTGACCGGCG
GTGCAGGGCCGCAGGGAAGGTCGAGCCATGCCACTGGGGCGGGAAATAAT
GGCGCTGGGAAAGTGCCAGTGTCCCGTCACGCTGGCCACGAGATGCGATC
TGCCGGCAGCATGGGCGGTGTAGGCAATGGCGGCGCCACGTCGGCCGTGC
CTCGTGGTGGGGGATCTGGAACTCACGCGTCTGGTGTCCCTCCCAAGATG
AAGGAAGGGCAAAATGGAAGCGCAGCTGGAATGAAGACTACAGATGTTTT
GGGGTCAAAGGTGGCCAGCGGAGCCCTGAGCGGCCGGCCGGGCCAACATC
AGCCTCAGTGGAAGCAGCAATCTCACGCTCAGCCTGCAGGAGGCGCAAAG
CCGCGCGCTGGCACTCAACAGCACCAGCAGCCAAAGACGGCAGCGGTGCA
GGCGACGGCCGGGGGAACGAAATCGAGCGCGGGAGAGGCGAAGAAAGTGG
GAGGTGCTCCCAGTCAACAGCAACAGCCACAGCAATATCAAACGCAACAA
GGGCAAGAGCAGTACCAGTACCAACAGTTGCAGTACTCGTACCCGCAGCA
GGTATCCCAAACGCCGGCGGCAGCGAGCGGCGGCAGCGTGTATGTCTCTT
ACATCCAACAG
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