mRNA_E_fasciculatus_S2_contig7.15148.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7.15148.1
Unique NamemRNA_E_fasciculatus_S2_contig7.15148.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7.15148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 390 bits (1002), Expect = 1.160e-128
Identity = 219/247 (88.66%), Postives = 225/247 (91.09%), Query Frame = 2 
Query:   98 MLHVGLFFRGTVPLLACLCVACTAFIPVPTRFPCRGPQAANSARPSTTIAGPGSPTQQATAPTAGTRRRSISSSCCGEGAGGEGVEVAVDSAAAXXXXXXXX---AEVDPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIEKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGLAAVDFLDAERLDVLQG 829
            MLH+GLFFRGTVPLLACLCVACTAFIPVPTRFP RG Q A+SARPSTTIAGPGSPTQQAT PTAGTRRR IS  CCGEGAGGE           XXXXXXXX   AE+DPFRPTRASMSPLVINALVSVLF+PDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSI KYGMFSDYGMS+NVENDPLAQMNQAECLLALYILHKENAG+AAVDFLDAERLDVLQG
Sbjct:    1 MLHLGLFFRGTVPLLACLCVACTAFIPVPTRFPSRGQQVASSARPSTTIAGPGSPTQQATTPTAGTRRRPISVPCCGEGAGGEXXXXXXXXXXXXXXXXXXXXXXAEMDPFRPTRASMSPLVINALVSVLFRPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVLQG 247
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7.15148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 6.580e-73
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 2 
Query:  440 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIEKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGLAAVDFLDAERLDVLQG 829
            MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSI KYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAG AAVDFLDAERLDVL G
Sbjct:    1 MSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLAG 130
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7.15148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.600e-33
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 2 
Query:  404 AEVDPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIEKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGLAAVDFLDAERLDVLQG 829
            A  DPFRP +AS+ PLVINAL  VLFK D  A  A +A L+ R D   T EE+  V SRV GV     ELRF LA+AV R   I KYGM  DYG+SE++E++PLAQ+N AECLLALY+LH+E  G     F+DAE+LDVL+G
Sbjct:   39 AASDPFRPAKASIDPLVINALQRVLFK-DEPADAAVSALLQSRDD-ALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 177
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7.15148.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.160e-12888.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.580e-7397.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.600e-3357.04protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7contigE_fasciculatus_S2_contig7:82192..85669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score248.1
Seed ortholog evalue4.4e-63
Seed eggNOG ortholog2880.D7FRB2
Model size2143
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2EWVJ@1,2SYMA@2759
Cds size735
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842358.7284787-UTR-E_fasciculatus_S2_contig7:82191..835021696842358.7284787-UTR-E_fasciculatus_S2_contig7:82191..83502Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7 82192..83502 -
1696842358.7813106-UTR-E_fasciculatus_S2_contig7:85572..856691696842358.7813106-UTR-E_fasciculatus_S2_contig7:85572..85669Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7 85573..85669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842358.7473116-CDS-E_fasciculatus_S2_contig7:83502..836921696842358.7473116-CDS-E_fasciculatus_S2_contig7:83502..83692Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 83503..83692 -
1696842358.7615929-CDS-E_fasciculatus_S2_contig7:84282..844371696842358.7615929-CDS-E_fasciculatus_S2_contig7:84282..84437Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 84283..84437 -
1696842358.7715347-CDS-E_fasciculatus_S2_contig7:85182..855721696842358.7715347-CDS-E_fasciculatus_S2_contig7:85182..85572Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 85183..85572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7.15148.1prot_E_fasciculatus_S2_contig7.15148.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7 83503..85572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7.15148.1

>prot_E_fasciculatus_S2_contig7.15148.1 ID=prot_E_fasciculatus_S2_contig7.15148.1|Name=mRNA_E_fasciculatus_S2_contig7.15148.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=245bp
MLHVGLFFRGTVPLLACLCVACTAFIPVPTRFPCRGPQAANSARPSTTIA
GPGSPTQQATAPTAGTRRRSISSSCCGEGAGGEGVEVAVDSAAAPGAAAA
AAAEVDPFRPTRASMSPLVINALVSVLFKPDTEATGAAAAALERRSDWEF
TEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIEKYGMFSDYGMSEN
VENDPLAQMNQAECLLALYILHKENAGLAAVDFLDAERLDVLQG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7:82192..85669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7.15148.1 ID=mRNA_E_fasciculatus_S2_contig7.15148.1|Name=mRNA_E_fasciculatus_S2_contig7.15148.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3478bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7:82192..85669- (Ectocarpus fasciculatus EfasUO2)
GGCACACCACAGACCAGACAGATGAGATGCAAACAGCCCCATTCCATTGG
CTCAGTGCAGTGTAGCTCCAGCCCGCTACCTTACACCACGCTCTTCTATG
CTTCACGTGGGTCTATTTTTTCGGGGTACCGTCCCCTTGCTCGCGTGCTT
ATGTGTGGCCTGCACCGCCTTCATTCCCGTGCCGACGAGATTCCCTTGTC
GAGGACCACAGGCCGCTAATTCAGCACGCCCATCGACCACCATAGCTGGA
CCAGGGTCGCCAACACAGCAGGCAACAGCGCCGACAGCAGGCACACGACG
ACGGTCAATATCAAGTTCGTGTTGCGGCGAGGGTGCAGGAGGCGAAGGCG
TTGAAGTTGCAGTTGATAGTGCTGCCGCACCTGGTGCTGCTGCTGCTGCC
GCCGCCGAGGTGGACCCTTTTCGTCCAACGAGGGCGTCCATGTCTCCGTT
GGTCATCAACGCCTTGGTGTCGGTGCTGTTCAAACCGGTGAGCTGTGAGG
AGTTATCACTGGCTGTGCGACTGTGCGCGCGATCCATAAGAACTACGAGT
GTTTTAAAAGTCCGCTACTGATGCTGAACCTTCACCGGGCGTTGGTGTGG
CGATCTGATCTTATCTTTGCAACGGCCAATCTGGGGGCGCGATCGTGGTT
CAACGCAACGCGTTTCCCGCACGCGATCAGTGCATGCATCAGGCGCAAGG
CCATTCCGACCGATCAAGTCAATGGACTCTCTGTGCGCGCGCGATAGTTG
GTCTGGTTCTGTGTGGCGTGCACTCCGTGCAACTCTGCACTATTGCAGGC
ACCAGGCATCTCGATACAAGTCTACAGCAGTGTGGATACCACACGGCGGT
AGTAGTGGGTGGCCCGATGGCCGCAACCTGAAGAGCGGAGGTGCCAGTCA
TGGCGGTGCAGTAGTCGCTGTTCACCGCTGCAACCCGGTTGAGCGGCAAT
CTGCAGCTATTGAGAACGCTATCGAGGACGAGGCTACTGCTGGGTATTCT
CCCGTCACAACAACGACGATCCAAACCATCAAGTGGCGGAACCCCCCACC
TCCCGTCTTCTTGTCTCCCCCCACACCTGCACACACGTGATACCTAGATG
CAGACCTGGGAGCCCCGCCACTCAACAGACCACCTGCCCACTCAATCGCT
GTATCTGGCTGCACCCACTGCAACGTCACGGTTTTACCCACGAGCACCAC
ACCTCGTCGACTCTTTGCTCATGACCAACCAGGATACAGAGGCCACCGGG
GCGGCGGCCGCTGCACTGGAGCGGCGCAGTGATTGGGAATTCACTGAGGA
GGAGGAAAGGGCCGTCACCAGCAGGGTGTGCGGCGTGGCAAGCCATTTGA
CCGAGCTTCGTTTTATGCTCGCCACTGCAGTGGAACGGTGAGAGTTCGAG
GGGTTTTGGCTACATACATAGACGCGTATGGAGCGACCTCGAGTAAGGTA
GGGACTTGCCGCGACTGGTGCAACTACAATAGCTCCCGGATCTCGGCGTG
CAGCAGTTGCATTTGGTTTTGAGCCTTCGCTTTCCATGTGGAACACTCAA
CTGAAATCGACCTGTTGGGGGCTCATACTGTACGGAGTTGGAGGGTCTTC
GGCTGTGTCCTTGACGGAGAATCATATTCATTCACAGGTAAGTGCAGCCG
TGGTGACGAGAGGGACATGGAGGTACGCTCTCAACCCCACCCAATAGTTC
CCCGTATGAGTCTGCTTGCAGCCTTGCAGCTTTGTCCTCGCCCCGCCTTT
TATGCCCGACCAGCCCTCTTCACAATTCCCAGAAACAGTTATGCAATCAG
CTGCTTGCCTCCGCTGAACTACTCATCCTCAATCCCCCACGAACGCGCGC
TGCGTGTCCCTTCTTTTCTTGCTCGCTTGTTTGCATCTGGCGACGCGGAC
AACTGACTGCACACTCAACCTCTTGGCACATCTACCTTCCCCACTTGTTG
GATTGGGTTGGGGTCACGCTTGCCCAGAACTCCGTCGATCGAAAAGTACG
GCATGTTCTCGGACTATGGCATGAGCGAAAACGTAGAGAACGACCCCTTG
GCTCAAATGAACCAGGCCGAGTGTCTACTGGCGCTGTATATTTTGCACAA
GGAGAATGCTGGGCTCGCGGCGGTCGATTTTTTGGACGCCGAAAGGCTGG
ATGTTTTGCAGGGCTAGACAACCCGGAGCCTACCCAGACTATTGTCTGTA
CTGCTGTTGATTTTGGGGTATGGTGCTCTGGCAATTTTTGTCTCTCGAGA
TCGGAATTTGGGGTCGAGGGTCGTGCAGTGTTTTATTTGGCAGTAGTTGG
TTTATCCGTAAATACTGGAAAGGCGAGTCAGTTTGGTCGCCGCGAGTAAG
GCGAACACCTTTGCGATTAATCTTTAGGCAATATACCATCAAAGAAAGGC
TATACCCGTCCGATATAGCATATAACCACAGTAGTCGGAGGGGATCTTGC
AGTTTTGTGTGTAAGTGGCGATTTTGTCTGTCTTCGGCGATGTGTGCTGT
GCTGATTTTTCTTGCCCCGTTGTATCTATTTTCCCTTTGATTGTTCGAGG
TGTACTCTTTTTTGAATACTGCAGCTGTAGTGCAATGGTGCTTAATAGAA
ATGTTCCACGCCTGTGCATACGTGCCTTGTTTCTTAGATTTTTGGAGATT
TTCGGGGCGGGGGGAACGGTAGTCTAATTCCGTTATATAGCACACGGGCC
CCGCGGAGGGACCCAGTTTTCGTCGGGGGAGCCCATTCGCGAGCGAGGAT
CCTCTCTTGTAAACTCCGAAGCCATGGTCACACGAAACGGGTACACCTAC
AAATATGCACAACGAGAGAGCACCTCCCCCGCTAAAAAAAGTAAGAGAGT
ATGTGTGAAACGTCGCCACTACACGATGGATGTCTCCCATGTGCATCTTG
CGTAGAGTGAGTGGGCTCTAAACTCGAAGGAAATAGTCAACAGCCATTCT
TTTCGGCCGTCCGGGGGGCTACCTAGGTGTGTGGGATGGATTTTGACGGA
CACCTTCGGGAGTTTGGTCTATGATCAAGGGAGGCGTCTGCATCAGTTGG
ATCAGTACGGAGTTGGGATCGGAATGATTTTTATGGTGCAACAATAATGC
TGTGTACTCGGCCAGCTTGGCTGCCGTTTCATTGTGCCGATTATCACATC
ACCTTTGAATGGTTTGGCTAAAAACTACGAATCGTGGATGAACTTTGTTT
GTGAAAGTGTTGATTGATACTGATTTCCGACAATCCCGTGTGCTCATGGC
TGGTGGCTGATGAGGCAAAAGCAGAACTCGTCAAGCTGCCGTAGCGACAA
TGAACCTAAAGGTCAAATCAAGGTGGCATACAGGTACAAGGGTACAATAG
CAGCAGCAGCTGGGGTCAGTTTGAAAAATATCGTCAACCTTGTAACCACT
TGGTCGTGATTCGAGTGCCGCGAATGATCTTCTACTAGCTGCAGAAATTA
CGTGGGCACCCTTGACAGTGCATCTGCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7:82192..85669-

>mRNA_E_fasciculatus_S2_contig7.15148.1 ID=mRNA_E_fasciculatus_S2_contig7.15148.1|Name=mRNA_E_fasciculatus_S2_contig7.15148.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=735bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7:82192..85669- (Ectocarpus fasciculatus EfasUO2)
ATGCTTCACGTGGGTCTATTTTTTCGGGGTACCGTCCCCTTGCTCGCGTG
CTTATGTGTGGCCTGCACCGCCTTCATTCCCGTGCCGACGAGATTCCCTT
GTCGAGGACCACAGGCCGCTAATTCAGCACGCCCATCGACCACCATAGCT
GGACCAGGGTCGCCAACACAGCAGGCAACAGCGCCGACAGCAGGCACACG
ACGACGGTCAATATCAAGTTCGTGTTGCGGCGAGGGTGCAGGAGGCGAAG
GCGTTGAAGTTGCAGTTGATAGTGCTGCCGCACCTGGTGCTGCTGCTGCT
GCCGCCGCCGAGGTGGACCCTTTTCGTCCAACGAGGGCGTCCATGTCTCC
GTTGGTCATCAACGCCTTGGTGTCGGTGCTGTTCAAACCGGATACAGAGG
CCACCGGGGCGGCGGCCGCTGCACTGGAGCGGCGCAGTGATTGGGAATTC
ACTGAGGAGGAGGAAAGGGCCGTCACCAGCAGGGTGTGCGGCGTGGCAAG
CCATTTGACCGAGCTTCGTTTTATGCTCGCCACTGCAGTGGAACGAACTC
CGTCGATCGAAAAGTACGGCATGTTCTCGGACTATGGCATGAGCGAAAAC
GTAGAGAACGACCCCTTGGCTCAAATGAACCAGGCCGAGTGTCTACTGGC
GCTGTATATTTTGCACAAGGAGAATGCTGGGCTCGCGGCGGTCGATTTTT
TGGACGCCGAAAGGCTGGATGTTTTGCAGGGCTAG
back to top