mRNA_E_fasciculatus_S2_contig6985.15124.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6985.15124.1
Unique NamemRNA_E_fasciculatus_S2_contig6985.15124.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6985.15124.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6985contigE_fasciculatus_S2_contig6985:6232..7077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons3
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.8557951-CDS-E_fasciculatus_S2_contig6985:6231..63721696842355.8557951-CDS-E_fasciculatus_S2_contig6985:6231..6372Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 6232..6372 -
1696842355.8679743-CDS-E_fasciculatus_S2_contig6985:6672..67891696842355.8679743-CDS-E_fasciculatus_S2_contig6985:6672..6789Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 6673..6789 -
1696842355.8792505-CDS-E_fasciculatus_S2_contig6985:6981..70771696842355.8792505-CDS-E_fasciculatus_S2_contig6985:6981..7077Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 6982..7077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6985.15124.1prot_E_fasciculatus_S2_contig6985.15124.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6985 6232..7077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6985.15124.1

>prot_E_fasciculatus_S2_contig6985.15124.1 ID=prot_E_fasciculatus_S2_contig6985.15124.1|Name=mRNA_E_fasciculatus_S2_contig6985.15124.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
PAATEGPLLGVHHPFIGADGYLGGGFATVRQQHCVDEAHCRLFDRVREEA
TKAEFPVPPPLALSAVKSTTTIHCPGCQTSHDNLDEAPSIRVSFADGAQK
PATLQQLLEDTTQKETRD
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mRNA from alignment at E_fasciculatus_S2_contig6985:6232..7077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6985.15124.1 ID=mRNA_E_fasciculatus_S2_contig6985.15124.1|Name=mRNA_E_fasciculatus_S2_contig6985.15124.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:6232..7077- (Ectocarpus fasciculatus EfasUO2)
CCTGCTGCCACAGAGGGCCCGTTGTTGGGGGTCCACCACCCATTCATTGG
GGCTGACGGATACCTGGGGGGGGGGTTCGCGACTGTGCGGCAACAGGCAA
GCAGCATTGAGCCTCACCGTTGTCCCTTGCGTGTGTAAAAGTCTGTGTGT
ACATCATCGTGTCTTTCCTGCGCCGGTGCCGTTGTGCTTGAGCGAAAACA
AGATGCTTGGTTCTGGAAACCCCATCGGGCCTGAATCGCTCACCTCCTTG
CCTCACTCGCTGCTGCCGGGGCTTTTGTTCATGCACAGCATTGTGTCGAC
GAGGCGCACTGCCGCCTCTTCGATCGGGTTAGAGAGGAGGCGACCAAAGC
TGAATTTCCCGTGCCCCCTCCACTGGCACTCAGTGCCGTGAAGTCGACAA
CCACGGTGAGCAGCGGGAAACAAACACCCGATTGTGCAAAGCGCGGGGGG
GGGGTGGGGGTGGAATCGGACCCGGAGGGTTGGGTCGTGTTTGCGGCGGC
CTCTATCCATGCTTGAACACAAACCAGAGTGAGTCCCTGCGCGAACCGGC
GACTTGGTTCTTGTTTTTGCTCCTGGCTCTAGACAGTCAGGGATTGGCCC
GAACAAATTATTCGAGCGAAGCGATTGCGACCATCACAATCACACGACGA
TGAGTTCGGCACCCACGCCGTCATCACTGACAGACATTGACGCTCTAATT
CACAGATACATTGCCCCGGCTGCCAAACAAGTCACGACAACTTGGATGAA
GCACCCAGCATCCGGGTGTCTTTTGCGGACGGAGCACAAAAACCCGCGAC
TCTCCAGCAGCTGCTCGAGGACACCACCCAGAAGGAGACGAGGGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6985:6232..7077-

>mRNA_E_fasciculatus_S2_contig6985.15124.1 ID=mRNA_E_fasciculatus_S2_contig6985.15124.1|Name=mRNA_E_fasciculatus_S2_contig6985.15124.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:6232..7077- (Ectocarpus fasciculatus EfasUO2)
CCTGCTGCCACAGAGGGCCCGTTGTTGGGGGTCCACCACCCATTCATTGG
GGCTGACGGATACCTGGGGGGGGGGTTCGCGACTGTGCGGCAACAGCATT
GTGTCGACGAGGCGCACTGCCGCCTCTTCGATCGGGTTAGAGAGGAGGCG
ACCAAAGCTGAATTTCCCGTGCCCCCTCCACTGGCACTCAGTGCCGTGAA
GTCGACAACCACGATACATTGCCCCGGCTGCCAAACAAGTCACGACAACT
TGGATGAAGCACCCAGCATCCGGGTGTCTTTTGCGGACGGAGCACAAAAA
CCCGCGACTCTCCAGCAGCTGCTCGAGGACACCACCCAGAAGGAGACGAG
GGAC
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