mRNA_E_fasciculatus_S2_contig6985.15122.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6985.15122.1
Unique NamemRNA_E_fasciculatus_S2_contig6985.15122.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6985.15122.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 776 bits (2005), Expect = 8.740e-272
Identity = 399/428 (93.22%), Postives = 407/428 (95.09%), Query Frame = 1 
Query:    1 RRVQPIDGALQKLAGTPEEVQKFLRLSTEASPQQLALCRALLKDGGAGLLSAKHASNDRRIYRGGATSGSDLGPAPIRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAEAGDVDAFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSTTMPARVRELSRTFRDLTCMLLLNRFPNVHALMVLSFGEVCDQGAARHGVEWSGRDGKVGTFASHHICTIPGGLPAATSNFAGLCLLHRAARDRKGCRTLEDLGGERRRSAVADAVDALVGAADFVQPKKSAAAFHGEKKALRAGVEENDEVFEEAFNAIRTRLGPALFTKQQCSDGGAAKYTAEERGAEKSTVELKAEGGE 1284
            R V+PI GALQ+LAGTPEEVQKFLRLSTEASPQQL LCRALLKDGGAGLLSAKHASN  RIYRGGATSGSDLGPA IRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAA+AGDV AFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDS TMP RVRELSRTF DLTC LL+NRFPNVHALMVLSFGEVCDQGAARHGV WSGRD KVG FASHHICTIPGGLPAATSNFAGLCLLH AARDR+GCRTLEDLGGERRRSAVA+AVDALVGA DFV P+K AAAF GEK+ALRAGVEENDEVFEEAFNAIRTRLGPALFT QQ SDGGAAKYTAEERGAEKSTVELKAEGGE
Sbjct:  458 RAVEPIAGALQELAGTPEEVQKFLRLSTEASPQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSKTMPPRVRELSRTFLDLTCTLLINRFPNVHALMVLSFGEVCDQGAARHGVVWSGRDDKVGMFASHHICTIPGGLPAATSNFAGLCLLHHAARDREGCRTLEDLGGERRRSAVAEAVDALVGAQDFVAPQKGAAAFDGEKEALRAGVEENDEVFEEAFNAIRTRLGPALFTTQQRSDGGAAKYTAEERGAEKSTVELKAEGGE 885
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6985.15122.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ubiquitin8.740e-27293.22carboxyl-terminal hydrolase family protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6985contigE_fasciculatus_S2_contig6985:1087..2917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size1284
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-01_001300.1
Cds size1284
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.9213982-CDS-E_fasciculatus_S2_contig6985:1086..11601696842355.9213982-CDS-E_fasciculatus_S2_contig6985:1086..1160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 1087..1160 -
1696842355.9349222-CDS-E_fasciculatus_S2_contig6985:1707..29171696842355.9349222-CDS-E_fasciculatus_S2_contig6985:1707..2917Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 1708..2917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6985.15122.1prot_E_fasciculatus_S2_contig6985.15122.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6985 1087..2917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6985.15122.1

>prot_E_fasciculatus_S2_contig6985.15122.1 ID=prot_E_fasciculatus_S2_contig6985.15122.1|Name=mRNA_E_fasciculatus_S2_contig6985.15122.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=428bp
RRVQPIDGALQKLAGTPEEVQKFLRLSTEASPQQLALCRALLKDGGAGLL
SAKHASNDRRIYRGGATSGSDLGPAPIRNILAAASQTRGPVGDMAAVLDG
PESTERRRAEEGLRRLRVAAEAGDVDAFLGVCGEIDVSIHIDTTHPAFAN
NAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAG
GAIAALNKNNSCSRSVHDRGGNCFDSTTMPARVRELSRTFRDLTCMLLLN
RFPNVHALMVLSFGEVCDQGAARHGVEWSGRDGKVGTFASHHICTIPGGL
PAATSNFAGLCLLHRAARDRKGCRTLEDLGGERRRSAVADAVDALVGAAD
FVQPKKSAAAFHGEKKALRAGVEENDEVFEEAFNAIRTRLGPALFTKQQC
SDGGAAKYTAEERGAEKSTVELKAEGGE
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mRNA from alignment at E_fasciculatus_S2_contig6985:1087..2917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6985.15122.1 ID=mRNA_E_fasciculatus_S2_contig6985.15122.1|Name=mRNA_E_fasciculatus_S2_contig6985.15122.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:1087..2917- (Ectocarpus fasciculatus EfasUO2)
CGCCGGGTCCAGCCCATAGACGGAGCCCTACAGAAGCTGGCCGGTACGCC
GGAGGAGGTGCAGAAGTTCCTGCGCCTCAGCACCGAGGCGTCGCCCCAAC
AACTTGCGCTGTGCCGCGCTCTCCTGAAGGACGGCGGCGCCGGCCTCCTG
TCGGCGAAGCACGCATCCAATGACCGCCGGATCTACAGAGGGGGTGCGAC
GTCGGGTTCTGATCTCGGGCCGGCTCCAATCAGGAATATCCTCGCCGCCG
CCAGCCAGACACGCGGCCCCGTGGGTGACATGGCGGCCGTCCTGGACGGG
CCCGAATCGACGGAGCGAAGAAGGGCCGAGGAGGGACTCCGGCGTCTCCG
GGTCGCGGCGGAAGCTGGAGACGTTGACGCGTTCTTGGGGGTGTGCGGCG
AGATCGACGTGTCGATCCACATTGACACCACCCACCCGGCGTTCGCCAAC
AACGCCGGACGGACGGAGCCGCTCCTTGTCGGGTGGGGGGCGTGCCCCAA
GTACGCCGAGTCACCTTTTTACGACCCGGACTGCCCCCTACTGACCGGCA
AGCTGTGGCGCGCTGCTGTGAAAGCGTCTCCCTTCGGCGGCGACGCGGGT
GGTGCTATCGCCGCCCTCAACAAGAACAACAGCTGCTCTCGCAGTGTCCA
TGACCGCGGGGGCAACTGCTTCGACAGCACGACCATGCCGGCGCGTGTGA
GGGAGCTCAGCCGGACTTTTCGGGACCTCACCTGCATGTTGCTCCTCAAT
CGCTTCCCGAACGTCCACGCTCTGATGGTTCTCAGCTTTGGCGAGGTGTG
CGACCAAGGCGCCGCACGACACGGCGTCGAGTGGTCTGGCAGGGACGGCA
AGGTCGGGACGTTCGCCTCGCACCACATCTGCACCATCCCGGGTGGCCTG
CCCGCCGCAACGAGCAACTTCGCGGGGCTCTGCCTCCTTCACCGCGCCGC
CCGTGACCGCAAGGGTTGCCGGACACTCGAAGACCTGGGGGGGGAGCGCC
GAAGGTCTGCGGTGGCTGATGCCGTAGATGCGCTGGTTGGTGCCGCGGAC
TTCGTCCAACCGAAGAAGAGCGCCGCGGCGTTCCACGGCGAGAAGAAGGC
TCTCCGAGCGGGCGTGGAGGAGAACGACGAGGTCTTCGAGGAAGCGTTCA
ACGCCATTCGCACACGGCTGGGCCCCGCTTTGTTCACGAAGCAGCAGTGT
TCTGACGGCGGTGAGGAACAAAGTAAACTTTCCTCTTGCTGTTGTTGCTT
GTTCCTCTTCCGTATTGAACACACGCCGCCGTCTGTCTCTAAAGATAATG
GTATTATTTTGTTGACGTTAAACCTCCTTGGTGTTGCTTCTTGTTTTCGT
TTTTTGCTGTGTTGGTGCTGCTGCCTCTTGTGACCTTGATATCATCGCCG
ACGGTCGATCTCGGGTGGCCCCCTTGGGTGGCATTGGTTAATCTATTCTT
TTGTGTTGATGCTTGTTTGAGTGGCCTCCCCTGTTGTTACGGATTAGCCT
TGCTCTGTGTCGGCGCCGAACGTTAGCGTCACGTCGCCAACGCAGCCTCT
ATAGCCACGGCCCCCCTCCGCGCCGACACTGACTACTTGGTAGAGATTGC
TTGTGGGGGTTGTCAAGTAGGACCAAGGTCGTGTACACGAGAGATTGGAC
TCTCTGGTATCACTCCTCCCTCTCCCCTCTCTCTCCCCTCTTGCCCCCTT
GTCACCCTCGACACCACCTCCCATCCCCGTGCATATTCCGTCACCTTCTC
CCTACAGGCGCGGCAAAGTACACCGCGGAGGAGCGGGGCGCGGAAAAGTC
AACGGTCGAGCTGAAGGCCGAAGGCGGTGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6985:1087..2917-

>mRNA_E_fasciculatus_S2_contig6985.15122.1 ID=mRNA_E_fasciculatus_S2_contig6985.15122.1|Name=mRNA_E_fasciculatus_S2_contig6985.15122.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1284bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:1087..2917- (Ectocarpus fasciculatus EfasUO2)
CGCCGGGTCCAGCCCATAGACGGAGCCCTACAGAAGCTGGCCGGTACGCC
GGAGGAGGTGCAGAAGTTCCTGCGCCTCAGCACCGAGGCGTCGCCCCAAC
AACTTGCGCTGTGCCGCGCTCTCCTGAAGGACGGCGGCGCCGGCCTCCTG
TCGGCGAAGCACGCATCCAATGACCGCCGGATCTACAGAGGGGGTGCGAC
GTCGGGTTCTGATCTCGGGCCGGCTCCAATCAGGAATATCCTCGCCGCCG
CCAGCCAGACACGCGGCCCCGTGGGTGACATGGCGGCCGTCCTGGACGGG
CCCGAATCGACGGAGCGAAGAAGGGCCGAGGAGGGACTCCGGCGTCTCCG
GGTCGCGGCGGAAGCTGGAGACGTTGACGCGTTCTTGGGGGTGTGCGGCG
AGATCGACGTGTCGATCCACATTGACACCACCCACCCGGCGTTCGCCAAC
AACGCCGGACGGACGGAGCCGCTCCTTGTCGGGTGGGGGGCGTGCCCCAA
GTACGCCGAGTCACCTTTTTACGACCCGGACTGCCCCCTACTGACCGGCA
AGCTGTGGCGCGCTGCTGTGAAAGCGTCTCCCTTCGGCGGCGACGCGGGT
GGTGCTATCGCCGCCCTCAACAAGAACAACAGCTGCTCTCGCAGTGTCCA
TGACCGCGGGGGCAACTGCTTCGACAGCACGACCATGCCGGCGCGTGTGA
GGGAGCTCAGCCGGACTTTTCGGGACCTCACCTGCATGTTGCTCCTCAAT
CGCTTCCCGAACGTCCACGCTCTGATGGTTCTCAGCTTTGGCGAGGTGTG
CGACCAAGGCGCCGCACGACACGGCGTCGAGTGGTCTGGCAGGGACGGCA
AGGTCGGGACGTTCGCCTCGCACCACATCTGCACCATCCCGGGTGGCCTG
CCCGCCGCAACGAGCAACTTCGCGGGGCTCTGCCTCCTTCACCGCGCCGC
CCGTGACCGCAAGGGTTGCCGGACACTCGAAGACCTGGGGGGGGAGCGCC
GAAGGTCTGCGGTGGCTGATGCCGTAGATGCGCTGGTTGGTGCCGCGGAC
TTCGTCCAACCGAAGAAGAGCGCCGCGGCGTTCCACGGCGAGAAGAAGGC
TCTCCGAGCGGGCGTGGAGGAGAACGACGAGGTCTTCGAGGAAGCGTTCA
ACGCCATTCGCACACGGCTGGGCCCCGCTTTGTTCACGAAGCAGCAGTGT
TCTGACGGCGGCGCGGCAAAGTACACCGCGGAGGAGCGGGGCGCGGAAAA
GTCAACGGTCGAGCTGAAGGCCGAAGGCGGTGAG
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