mRNA_E_fasciculatus_S2_contig6984.15121.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6984.15121.1
Unique NamemRNA_E_fasciculatus_S2_contig6984.15121.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6984.15121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G955_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.200e-47
Identity = 102/160 (63.75%), Postives = 113/160 (70.62%), Query Frame = 1 
Query:    1 GCTTMAARALKVAVLATTAVLLMKGAD--MPQHRQQFQDMRQDFRNPAICSGVNPLLQRFGDKVAPAVLMTGSIPVSASATTAGSSISSSAQSTSAEGVGLGSACGSEDAECHGDDTDEMTLSMLCWICTFFIWYLVARTTIAATMYVAGSATALFVAIG 474
            G TTMAARA K AV+A T +L MKGAD  MP H QQ  D++QDFRNPAIC GVNPL QR G KVA  V M GS+   AS   AGSS + +       G+G G ACGSEDAEC GDD DEMT S+LCWICTFF W +VART I A +YVAGSATALFV  G
Sbjct:    2 GGTTMAARAAKGAVIAVT-LLQMKGADGYMPHH-QQIHDVQQDFRNPAICRGVNPLNQRLGSKVA--VPMAGSLQA-ASTIAAGSSANDA-------GLGSGEACGSEDAECDGDDMDEMTFSVLCWICTFFFWCMVARTIIDAAVYVAGSATALFVVKG 149
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BLAST of mRNA_E_fasciculatus_S2_contig6984.15121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM4_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.750e-44
Identity = 97/156 (62.18%), Postives = 111/156 (71.15%), Query Frame = 1 
Query:   13 MAARALKVAVLATTAVLLMKGADMPQHRQQFQDMRQDFRNPAICSGVNPLLQRFGDKVAPAVLMTGSIPVSASATTAGSSISSSAQSTSAEGVGLGSA--CGSEDAECHGDDTDEMTLSMLCWICTFFIWYLVARTTIAATMYVAGSATALFVAIG 474
            MAARA+K  VL  T +LL +  D   H QQ  DM+QD R  AIC GVNPL Q FG K+A  V M GS+P  ASA +A SS+S  AQ TSA  V LGS   C  EDAECHGDDTD+MT S+LCWICTFF+ ++VART I A +YVAGSATALFVAIG
Sbjct:    1 MAARAVKGLVLTATVLLLKRTDDCMPHHQQIHDMQQDVRRSAICRGVNPL-QHFGSKMA--VPMAGSLPA-ASAISASSSLS--AQPTSAYHVDLGSGETCDLEDAECHGDDTDKMTFSVLCWICTFFVSFMVARTIIVAAVYVAGSATALFVAIG 150
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BLAST of mRNA_E_fasciculatus_S2_contig6984.15121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU61_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.950e-35
Identity = 90/161 (55.90%), Postives = 107/161 (66.46%), Query Frame = 1 
Query:   13 MAARALKVAVLATTAVLLMKGADMPQHR------QQFQDMRQDFRNPAICSGVNPLLQRFGDKVAPAVLMTGSIPVSASATTAGSSISSSAQSTSAEGVGLG--SACGSEDAECHGDDTDEMTLSMLCWICTFFIWYLVARTTIAATMYVAGSATALFVAI 471
            M ARA +VA LA   +L +    +PQ        +QF  +RQD       S  N LL RFG KVAP +LM GS+PV+ASA TAG SISSSAQ TSA+ VGLG    C  EDA+C GDDTDE+T SML W+ T F+WY VART I A MY+AG+AT+LFVAI
Sbjct:    2 MVARAPEVAALAAPLLLPLL---LPQEAGGFMLPRQFHHVRQD----VSFSPANMLL-RFGVKVAPVILMAGSLPVAASAATAGGSISSSAQPTSADDVGLGPGETCDPEDADCQGDDTDEITFSMLHWVRTLFVWYSVARTAIVAIMYIAGAATSLFVAI 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6984.15121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L143_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.660e-32
Identity = 76/127 (59.84%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:   97 QQFQDMRQDFRNPAICSGVNPLLQRFGDKVAPAVLMTGSIPVSASATTAGSSISSSAQSTSAEGVGLGS--ACGSEDAECHGDDTDEMTLSMLCWICTFFIWYLVARTTIAATMYVAGSATALFVAI 471
            +QF  +RQD       S  N  L RFG KVAP +L+ GS+PV+AS+ TAG SISSSAQ TSA+ VGLGS   C  EDA+C GDDTDE+T SML W+ T F+WY VAR    ATMY+AG+AT+LFVAI
Sbjct:    4 RQFHHVRQD----VSFSSANMSL-RFGVKVAPVILVAGSLPVAASSATAGDSISSSAQPTSADDVGLGSDETCDPEDADCQGDDTDEITFSMLYWVRTLFVWYSVARAAFLATMYIAGAATSLFVAI 125
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6984.15121.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.200e-4763.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.750e-4462.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.950e-3555.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.660e-3259.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6984contigE_fasciculatus_S2_contig6984:3509..5610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size474
Hectar predicted targeting categorysignal peptide
Exons4
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.7724686-UTR-E_fasciculatus_S2_contig6984:3508..35201696842355.7724686-UTR-E_fasciculatus_S2_contig6984:3508..3520Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6984 3509..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.7935684-CDS-E_fasciculatus_S2_contig6984:3520..36721696842355.7935684-CDS-E_fasciculatus_S2_contig6984:3520..3672Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6984 3521..3672 +
1696842355.8054476-CDS-E_fasciculatus_S2_contig6984:4057..41961696842355.8054476-CDS-E_fasciculatus_S2_contig6984:4057..4196Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6984 4058..4196 +
1696842355.8155847-CDS-E_fasciculatus_S2_contig6984:4785..48841696842355.8155847-CDS-E_fasciculatus_S2_contig6984:4785..4884Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6984 4786..4884 +
1696842355.8255267-CDS-E_fasciculatus_S2_contig6984:5538..56101696842355.8255267-CDS-E_fasciculatus_S2_contig6984:5538..5610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6984 5539..5610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6984.15121.1prot_E_fasciculatus_S2_contig6984.15121.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6984 3521..5610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6984.15121.1

>prot_E_fasciculatus_S2_contig6984.15121.1 ID=prot_E_fasciculatus_S2_contig6984.15121.1|Name=mRNA_E_fasciculatus_S2_contig6984.15121.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=154bp
MAARALKVAVLATTAVLLMKGADMPQHRQQFQDMRQDFRNPAICSGVNPL
LQRFGDKVAPAVLMTGSIPVSASATTAGSSISSSAQSTSAEGVGLGSACG
SEDAECHGDDTDEMTLSMLCWICTFFIWYLVARTTIAATMYVAGSATALF
VAIG
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mRNA from alignment at E_fasciculatus_S2_contig6984:3509..5610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6984.15121.1 ID=mRNA_E_fasciculatus_S2_contig6984.15121.1|Name=mRNA_E_fasciculatus_S2_contig6984.15121.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2102bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6984:3509..5610+ (Ectocarpus fasciculatus EfasUO2)
GGGTGCACCACGATGGCGGCTCGAGCGCTCAAGGTGGCGGTGCTCGCCAC
CACTGCTGTGCTGTTGATGAAGGGGGCCGACATGCCGCAGCACCGCCAGC
AGTTTCAAGACATGCGGCAGGACTTTCGCAACCCTGCCATTTGCAGCGGC
GTCAACCCACTGCTGTAAGTGTTTGGCCCGGTTCTGTACAGTTTATCCGG
GGGTAAACCTATAAAAGTACTCTTGTTGTGCATTTTATTGTTGTTGAAAG
TATCTTCATAGCCAAGCGTACCTTCATGGGTGGCAACTGGCGATCAAGTA
GCGGCATGGAAAGCCAACACTAGCGCGGTGGGGGGGGGGGTGCCATGAGA
ACGGAAACCGATCAAATGTCGTTCACGAGACAAGCAGACCGTGGACTGGC
TTGTACGTTTGGGGGCGTTTATTGTAGGGGGGGGATCCCCCCCTAAGGGG
GCGCAAAGGAAAGTTGCCGATCGATTCCAATGCATGCAAGAGGCGTTTAG
TCCCCCTCGATTCTTCCCTGCACTTGTGCCCTCTGTCTCGCCGTGGCAGT
CAACGCTTCGGGGATAAGGTCGCCCCGGCGGTTCTCATGACGGGCTCGAT
CCCGGTTTCTGCTTCGGCTACTACCGCAGGCAGCAGCATCAGCTCGTCGG
CGCAGTCTACGAGCGCCGAGGGTGTCGGTCTCGGCTCAGTTGAGCTCCAT
GTATTACAGAATGCGCCCCAACTTTAGAACTTGACAGTTAAGAGTTTGAG
CCTAAAAAGACCCGGAAATCTAAGAACTTGAGCACGATATTCAAGCCCGG
TCAATGACTCGTTCCTAAAACCTATATGGCGGCCGCTTGTAGCATCGTTC
TCGGATATAAGAGCTCCAGCCTCTGAAAAAACAGAGGTTGTCGAGTGCGG
GCGCTTTCTGTAAGCAGCTGGCTCGAGCGCGGTATCACGTGGTGCGCTTT
GGTTGGACTTGATCGTCCACCACTCGTCACTCGGGCCGAGTTGTATCGTA
GGTGGCTGATCAGGCCTGCGTATCGTTCCCCCCTTTGGCTCGAGGCCGCG
TGCACGCCCATTTATGTCTACCGCAGCTCATCCCTCCTCGGGCTTTGAAA
CGCCGACACGCTCGCAGTGCAGGCGGGGCAGGGAGGCACCGGCCGCCGTC
TCAACACACACCGACCCCCCTCGTTGTGGTACCTGGGCATTTTTGTTGCG
CTGATGTATGCCGTTTCGTGTACTGCGTGCGCTGCTTGCCGTGTCGTGTT
GCGTTGGGTGCGGTGTCGCCAGATGAGGCCTGCGGCTCTGAGGACGCAGA
GTGTCACGGCGACGACACAGACGAGATGACCCTCTCGATGCTGTGCTGGA
TCTGCACGTTCTTCATCTGGTACTTGGTGAGATCAAGAGTTACATAGTTC
CATTCCAGCCTTGGAGGCAGCTTAGCTCTACTGCTGTTGCACGTTGCCCT
CCTGCGGCACACACCTTTGTAGCAGACGGATGATTCCTCGAGTCTACCCA
CCCCGCAAAGCTAAACGTGCTTGTTCAGGGCGCGCAGGAGTGGGCGTGTG
GGCGTTCGCCACTTTTCTTCTGGCGCAAGTCTACAGCACTCGGTGTACTT
CCATGTGTCACGGATCAGCCGGGGTCAGACAAGAGGAAGGTCACACAGAA
AGAAGGTCACACAGGAGCTTTTCTTTTTTATTTGCCCCCATCTTTCCTCG
TGCGAGAAGGGTCCAGGCATTCCCTGTCCCCCGTCGACAGTGAAGTCGAA
TCATGGTGCGATTTTGATCGTATTCCCACTCAAAATCGTAGGCAAAGAGA
GCCCTTCCGAGAAGAGTCGCACCCAACCCGCCTTGCTAGCTGGTAACTTT
ACGAAGGTTTCCACCAGACCATCGGGGCTAGAAGGTGCGGTGTGAACAAA
CGAACCGATAAGCGAACGGATCGGCGACGCCCGAGTCGCTAATAGCCGGC
CTTCTGATTTTTATTCGCTTGCCCCTCCCGGCCGTAACACTGTTTGTTGT
TGGTCGGTATTGTGTTGTCGTCGCTAACAGGTCGCGCGGACGACGATCGC
CGCCACCATGTACGTCGCGGGCTCGGCAACGGCCCTGTTCGTGGCGATCG
GG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6984:3509..5610+

>mRNA_E_fasciculatus_S2_contig6984.15121.1 ID=mRNA_E_fasciculatus_S2_contig6984.15121.1|Name=mRNA_E_fasciculatus_S2_contig6984.15121.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=462bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6984:3509..5610+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGCTCGAGCGCTCAAGGTGGCGGTGCTCGCCACCACTGCTGTGCT
GTTGATGAAGGGGGCCGACATGCCGCAGCACCGCCAGCAGTTTCAAGACA
TGCGGCAGGACTTTCGCAACCCTGCCATTTGCAGCGGCGTCAACCCACTG
CTTCAACGCTTCGGGGATAAGGTCGCCCCGGCGGTTCTCATGACGGGCTC
GATCCCGGTTTCTGCTTCGGCTACTACCGCAGGCAGCAGCATCAGCTCGT
CGGCGCAGTCTACGAGCGCCGAGGGTGTCGGTCTCGGCTCAGCCTGCGGC
TCTGAGGACGCAGAGTGTCACGGCGACGACACAGACGAGATGACCCTCTC
GATGCTGTGCTGGATCTGCACGTTCTTCATCTGGTACTTGGTCGCGCGGA
CGACGATCGCCGCCACCATGTACGTCGCGGGCTCGGCAACGGCCCTGTTC
GTGGCGATCGGG
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