mRNA_E_fasciculatus_S2_contig6971.15111.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6971.15111.1
Unique NamemRNA_E_fasciculatus_S2_contig6971.15111.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6971.15111.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 9.780e-67
Identity = 105/145 (72.41%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:   76 DYLDGVGGGSGRREIPREDRFWMRVGRWLPSRTFICLFRCSRPTFAKLVTALYGTTDVRPADGGRGPPFCPCERTSMVLYRLGHGAGVCPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFL-RWPTRNEQDSISDAFERRTGFR 507
            DY+DGVG   GR+ IP E+RFW RVGR +PSR F+ LFRC RPTFA LV  LY T DVR +DGGRGP F PCERT+MVLYRLGHGAG   TAALFGVSDGWV+SCT EFI RV A L P+FL  WPTRN+QD+IS AFERRTGFR
Sbjct:    5 DYIDGVGRSRGRQSIPMEERFWHRVGREMPSRNFMILFRCMRPTFAALVKELYDTLDVRASDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGFR 149
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BLAST of mRNA_E_fasciculatus_S2_contig6971.15111.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.860e-11
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  262 GGRGPPFCPCERTSMVLYRLGHGAGVCPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFE 489
            G RGPPF PCER ++ ++RLG  + V  TA  FG+SDG VS  T E  +RV   L  + + WP+  EQ  +S A+E
Sbjct:    5 GRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWE 80
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BLAST of mRNA_E_fasciculatus_S2_contig6971.15111.1 vs.
Match: putative (nuclease HARBI1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DLH2_CRAVI)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-6
Identity = 41/151 (27.15%), Postives = 65/151 (43.05%), Query Frame = 1 
Query:   58 DRNDVQDYLDGVGGGSGRREIPREDRFWMRVGRWLPSRTFICLFRCSRPTFAKLVTALYGTTDVRPA--DGGRGPPFCPCERTSMVLYRLGHGAGVCPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGF 504
            DR  +  Y++ V G  G  +  R                   +FR +R TF  ++       +++     GGR  P    ++  M L+ LG    +   A  FGVS+  V     + +      L PK ++WP +NEQ+ IS+ FER+ GF
Sbjct:   39 DRCRISGYVENVVGNYGPEDFRR-------------------IFRMTRDTFGVILRYFEDMPNLQVDFHHGGR-EPLTVEKQLLMTLWYLGSQDTIHRVADRFGVSESTVLKMRNKIVDATLEHLMPKLIKWPDQNEQNDISNFFERKNGF 169
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BLAST of mRNA_E_fasciculatus_S2_contig6971.15111.1 vs.
Match: putative (nuclease HARBI1 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8AU84_CRAVI)

HSP 1 Score: 53.9 bits (128), Expect = 1.640e-5
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:  262 GGRGPPFCPCERTSMVLYRLGHGAGVCPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWPTRNEQDSISDAFERRTGF 504
            GGR  P    ++  M L+ LG    +   A  FGVS+  V     + +      L PK ++WP +NEQ+ IS+ FER+ GF
Sbjct:   26 GGR-EPLTVEKQLLMTLWYLGSQDTIHRVADRFGVSESTVLKMRNKIVDATLEHLMPKLIKWPDQNEQNDISNFFERKNGF 105
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6971.15111.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized9.780e-6772.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
DDE5.860e-1146.05Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
putative1.870e-627.15nuclease HARBI1 n=2 Tax=Crassostrea virginica TaxI... [more]
putative1.640e-535.80nuclease HARBI1 n=1 Tax=Crassostrea virginica TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6971contigE_fasciculatus_S2_contig6971:314..2658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.5
Seed ortholog evalue9e-07
Seed eggNOG ortholog5297.GMQ_15280T0
Model size510
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031519,GO:0031935,GO:0031936,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0034708,GO:0035097,GO:0035098,GO:0035102,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060968,GO:0060969,GO:0065007,GO:0070013,GO:0080090,GO:1902275,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2001141,GO:2001251
Exons2
EggNOG free text desc.nuclease activity
EggNOG OGsKOG4585@1,KOG4585@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000330.1
Cds size510
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.6668043-CDS-E_fasciculatus_S2_contig6971:313..5101696842354.6668043-CDS-E_fasciculatus_S2_contig6971:313..510Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6971 314..510 +
1696842354.6933517-CDS-E_fasciculatus_S2_contig6971:2345..26581696842354.6933517-CDS-E_fasciculatus_S2_contig6971:2345..2658Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6971 2346..2658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6971.15111.1prot_E_fasciculatus_S2_contig6971.15111.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6971 314..2658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6971.15111.1

>prot_E_fasciculatus_S2_contig6971.15111.1 ID=prot_E_fasciculatus_S2_contig6971.15111.1|Name=mRNA_E_fasciculatus_S2_contig6971.15111.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MLLMEEAREEEVMAYLSVFDRNDVQDYLDGVGGGSGRREIPREDRFWMRV
GRWLPSRTFICLFRCSRPTFAKLVTALYGTTDVRPADGGRGPPFCPCERT
SMVLYRLGHGAGVCPTAALFGVSDGWVSSCTKEFIKRVCATLTPKFLRWP
TRNEQDSISDAFERRTGFR*
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mRNA from alignment at E_fasciculatus_S2_contig6971:314..2658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6971.15111.1 ID=mRNA_E_fasciculatus_S2_contig6971.15111.1|Name=mRNA_E_fasciculatus_S2_contig6971.15111.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6971:314..2658+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCTTATGGAAGAAGCCCGAGAAGAAGAGGTCATGGCATACCTGAG
TGTATTCGACCGAAACGATGTCCAAGACTACCTCGACGGTGTCGGCGGAG
GAAGCGGTCGGCGTGAGATACCGCGAGAGGATCGGTTCTGGATGCGAGTC
GGGAGGTGGCTGCCATCCAGGACCTTTATTTGTCTCTTCCGCTGCTCGTG
AGTGTTGATAGATTGCCGTGAATCAATATAGGTGACTCGACGTATACGCA
TTATAACAACCCATCCCCAAGTCGCAGCGTGCTGACTCTCACCTTTGAAC
ATCACAACAGAAGTAGACCGAGCGAGAGCTGCGATATGCACCCCCGTCTG
GGGTTGGACTCGCGCGGTGTTACCATGGGAGAGGCTTTTGAACTGCAGGG
TGTTGTCTACGGCCGTTCATGGCGTAGAGAGTTGTGTCCCAAGGGTTCGC
CGAGACTCCAGAGCATTGGGCTATTGAAGTTGAAGTTCAATTATCAGCAC
ATAAACGCCCAAAGTTTTGCGGTACTACACTGCTGTTGACGACCTCACGA
CGTTGCGGCAGAGTACATGTGCCGAAAAGAGGCCAAAGACTCCACCCGGA
ATGTACCTTACACCACACGGAGTGCAGTGTCCTGAAGTAGTAATGCCATG
TGTACTAAGGGCAGCATGAGCAGCTCACCATCAGCCAGTGGTGGTGTGTC
CGATGCCCACAGCCGTACACACACCACCTGCTGTATGCATACAGCAGCAG
TAGTTTGACTCGCAAGACTCCAAATAAACCTCGACGGAAAACGACCCGAA
CCGGCCGGGTTTCTCCTCACTCCTCAAGTAAAGACATTATTGTAGACATC
CCCTGCGACTGTGATTATAACTTAAAACTGATAGACTATTGTATGCCTTC
AATTAGAACAGCAGTCTAAATATATACAACACCATCCGAGTACAAGCGAT
CAGCAAGAACGGATATTCCTGCAACTCTAAAAATGTACTCTAGCATTGAT
CATTTGGGGTCTTGTTACTGCTGTTAGGTGCGCTATAATGGTTCGTAGAG
CCCTAAGTTCCTCATCTTACAGGAGACCCGTATTGGGGGTGTCGGCGCGT
GTACTGGGTTATCACTCTCGCGGTTTCTTGTCGGGAGCGTTTCTACACGA
AGGACTTCGTTTCTTCGTTATGTGAGAGAGTAAGGTACGTGAGCGAGAGG
AGGCAAAGCCTGCAGCGCCAAGTATGTCTATCATACCCATTTATACATCA
CCTGCGTGCCCCCCTCGGAGATCTCGGAGACTTGTATACTGCCGAGTACA
CAAGCAACCGACCGGAACGATTCCTGTCCCTTTTTTAAGACCCACTATGA
AGGCCCACGTGTACATGCAAGTGCTCCGATGCTTCCTGGCTACTTCTACA
ACAACAGCAGTTCGTGCCGAAGATTTTACTCAATTTTTCCTAACCCCCAC
ACAACAACGAACGAACGTTGAATATCCCATTATGACACGGAACCACCAGA
AGCAATAGTAGCATCCACTAAAGACGCATATAGGCGTAGTTATGATGCAC
ACCCCCCCGTCGCGTGACAGACCGCAGATGTCTCTCGCCCACGGCGATGA
GAATTTGGGGAAGCCGTGCATCCAAGTGCGTCCGATTGTTTTGAGCGGCA
TGCCAAAAAAGTTAGTTGTAGTAACAGGGAAATTATTCCCAAAACTACGA
ATGAATGAGGTCATCCTCTGATGACAAACCCGACAACCCCATTGAGTATC
CGCCCTCACCCTCCTGTCGCCACGGGAGGTCACCCCCTTAGCAACGAAAA
ACCATGCGGGCCAGGATTTATTTTGTAGCGTGTTATCTGAAGGTCAGAGT
ATTAGTAACCGGAGCGTCCTCCTGTTGCTTCAGTCTTCCGTTCGGCTTGC
CGAGGAAGCGCGGTGGTCAACCGTAAAATGTGTTTCGAAACAACTACCGT
CGCGTCCATCAATTAACGTCTGGGCTAAGCATGGGCTAACCCTAACTGAT
CAACAACGCGAACGAATCATCCTCGACGACAGGAGACCTACCTTTGCCAA
GCTCGTCACTGCACTATATGGCACGACGGACGTACGCCCAGCCGACGGCG
GCCGTGGACCTCCGTTCTGCCCCTGTGAACGAACTTCCATGGTTCTCTAT
CGTCTTGGACATGGGGCAGGTGTATGTCCGACGGCCGCGCTTTTCGGGGT
CTCTGATGGGTGGGTATCAAGCTGTACGAAAGAATTCATCAAAAGGGTTT
GCGCCACTCTTACTCCGAAGTTCTTGCGGTGGCCTACCAGGAACGAGCAA
GACAGCATCTCGGACGCTTTCGAGAGACGTACAGGCTTCAGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6971:314..2658+

>mRNA_E_fasciculatus_S2_contig6971.15111.1 ID=mRNA_E_fasciculatus_S2_contig6971.15111.1|Name=mRNA_E_fasciculatus_S2_contig6971.15111.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6971:314..2658+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCTTATGGAAGAAGCCCGAGAAGAAGAGGTCATGGCATACCTGAG
TGTATTCGACCGAAACGATGTCCAAGACTACCTCGACGGTGTCGGCGGAG
GAAGCGGTCGGCGTGAGATACCGCGAGAGGATCGGTTCTGGATGCGAGTC
GGGAGGTGGCTGCCATCCAGGACCTTTATTTGTCTCTTCCGCTGCTCGAG
ACCTACCTTTGCCAAGCTCGTCACTGCACTATATGGCACGACGGACGTAC
GCCCAGCCGACGGCGGCCGTGGACCTCCGTTCTGCCCCTGTGAACGAACT
TCCATGGTTCTCTATCGTCTTGGACATGGGGCAGGTGTATGTCCGACGGC
CGCGCTTTTCGGGGTCTCTGATGGGTGGGTATCAAGCTGTACGAAAGAAT
TCATCAAAAGGGTTTGCGCCACTCTTACTCCGAAGTTCTTGCGGTGGCCT
ACCAGGAACGAGCAAGACAGCATCTCGGACGCTTTCGAGAGACGTACAGG
CTTCAGGTAA
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