mRNA_E_fasciculatus_S2_contig6927.15062.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6927.15062.1
Unique NamemRNA_E_fasciculatus_S2_contig6927.15062.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6927.15062.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6927contigE_fasciculatus_S2_contig6927:4633..5377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size340
Hectar predicted targeting categoryother localisation
Exons3
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.899812-UTR-E_fasciculatus_S2_contig6927:4632..46701696842349.899812-UTR-E_fasciculatus_S2_contig6927:4632..4670Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6927 4633..4670 -
1696842349.9464297-UTR-E_fasciculatus_S2_contig6927:5141..51661696842349.9464297-UTR-E_fasciculatus_S2_contig6927:5141..5166Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6927 5142..5166 -
1696842349.9582267-UTR-E_fasciculatus_S2_contig6927:5298..53771696842349.9582267-UTR-E_fasciculatus_S2_contig6927:5298..5377Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6927 5299..5377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.9123173-CDS-E_fasciculatus_S2_contig6927:4670..47101696842349.9123173-CDS-E_fasciculatus_S2_contig6927:4670..4710Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6927 4671..4710 -
1696842349.9277558-CDS-E_fasciculatus_S2_contig6927:4983..51411696842349.9277558-CDS-E_fasciculatus_S2_contig6927:4983..5141Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6927 4984..5141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6927.15062.1prot_E_fasciculatus_S2_contig6927.15062.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6927 4671..5141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6927.15062.1

>prot_E_fasciculatus_S2_contig6927.15062.1 ID=prot_E_fasciculatus_S2_contig6927.15062.1|Name=mRNA_E_fasciculatus_S2_contig6927.15062.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
MSRSAPAPGGREGPVKARRCKRRRKQEYSDVADSGHDCTRRTRSTRSPWN
IKRDSAATQPSPDGR*
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mRNA from alignment at E_fasciculatus_S2_contig6927:4633..5377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6927.15062.1 ID=mRNA_E_fasciculatus_S2_contig6927.15062.1|Name=mRNA_E_fasciculatus_S2_contig6927.15062.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=745bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6927:4633..5377- (Ectocarpus fasciculatus EfasUO2)
AGCAGCGTGTGGGCTTGGAGGGAAAGCTGCGGCCACCCCTTCTATACGGA
TTCCATCACCGTCGCTGGTCTGCTCGAAGGTAAAACATTTTTGTGATTCC
CTGCTCTCGTGCGTTACGAATTGTTAAGCGTTGGTTGATGGGAACACTGT
GAGTGGGGAGTACTGATGCCCTTCACCCCATCCCTCCCTCCTGCTCGATG
AGGTTGAATAGGTTGAATGAACCTGACACCGTGGGTATGTCACGGAGCGC
ACCGGCACCGGGAGGTCGAGAAGGGCCTGTCAAGGCGCGCCGGTGCAAGC
GTCGGCGCAAACAGGAGTACAGCGACGTTGCTGACAGCGGACACGACTGT
ACGAGAAGGACCCGTTCAACACGTTCACCGTGGAATATAAAAAGGTGTGC
CATCAAACTGAGTACCTCGGAGTGATACGGTAGCAATACGGGCCGTCGTC
GCGCTGGTATTTCTTTTGTTTTGTTTACATTTACGTTCATTTCCCTACGC
CCGTAGTTGCTACTTACCCTTCCCTTCAACAACGCTCTTATCTCTAGTCC
GAGACCGCCCTTCATGGTTACGACAGCCGACTCCTCGTTGTTGTCGATCT
CTGATTGTGCTTGGTTCAATGATTTCCTGCTGCTTTTACCACTGAGGTTC
CGCATTTTTGCTCCTAGGGATTCAGCTGCCACACAACCCTCGCCTGATGG
GCGGTGAAGTGCTGGGTGTATCGTTCATCAGGTACGAGACTGCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6927:4633..5377-

>mRNA_E_fasciculatus_S2_contig6927.15062.1 ID=mRNA_E_fasciculatus_S2_contig6927.15062.1|Name=mRNA_E_fasciculatus_S2_contig6927.15062.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6927:4633..5377- (Ectocarpus fasciculatus EfasUO2)
ATGTCACGGAGCGCACCGGCACCGGGAGGTCGAGAAGGGCCTGTCAAGGC
GCGCCGGTGCAAGCGTCGGCGCAAACAGGAGTACAGCGACGTTGCTGACA
GCGGACACGACTGTACGAGAAGGACCCGTTCAACACGTTCACCGTGGAAT
ATAAAAAGGGATTCAGCTGCCACACAACCCTCGCCTGATGGGCGGTGA
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