mRNA_E_fasciculatus_S2_contig6900.15038.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6900.15038.1
Unique NamemRNA_E_fasciculatus_S2_contig6900.15038.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carnitine (O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB6_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.090e-56
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQIHGRVRVVAAEGASDESGGYSMWGSFRNNKGDPLL 300
            SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQI GRVRVVAAEGASDESGGYSMWGSFRN KGD LL
Sbjct:  665 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQIQGRVRVVAAEGASDESGGYSMWGSFRNKKGDALL 764
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L403_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 6.870e-54
Identity = 97/102 (95.10%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQ--IHGRVRVVAAEGASDESGGYSMWGSFRNNKGDPLL 300
            SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQ  IHGRVRVVAA GASDESGGYSMWGSFRN KGD LL
Sbjct:  910 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQARIHGRVRVVAAGGASDESGGYSMWGSFRNKKGDALL 1011
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367K1D7_RHIAZ)

HSP 1 Score: 92.4 bits (228), Expect = 6.950e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFF----DTVFHAYSPSQIHGRVRVVAAEGASDESGGYSMWGSFRNNKG 288
            SNCGNP+LRLFGFGPVV DGFG+GYIIKE+ +  V +SK+RQT RF+  ++ +       + +   PS I  R RV+  E   + +GGYS + +  ++ G
Sbjct:  570 SNCGNPALRLFGFGPVVADGFGIGYIIKEDGIAFVASSKHRQTQRFLDTLKGYLLDIQKLLLNEKYPSGISSRQRVLELEETEELNGGYSYFDNGNHSSG 669
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WZA1_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 1.090e-16
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIR----EFFDTVFHAYSPSQIHGRVRVVAAEGASDESGGYSMW 264
            SNCGNP+LRLFGFGPVV DGFG+GYIIKE+ +  V +SK+RQT+RF+  +     E    +     PS +  R R++A E A + + GYS +
Sbjct:  592 SNCGNPALRLFGFGPVVSDGFGIGYIIKEDGIAFVASSKHRQTERFLSTLENVLLEIQSMLLKEKYPSGLSQRQRLLAMEEAYEIANGYSYF 683
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FS93_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.710e-16
Identity = 41/91 (45.05%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQIHGRV--RVVAAEGASDESGGYSMWG 267
            SNCGN +LR FGFGPV ++GFG+GYIIKE+ + + VTS++RQTDR++  +  +F  +       +I+ R+  R +A +G ++  GGYS +G
Sbjct:  215 SNCGNEALRHFGFGPVSQNGFGIGYIIKEDCINICVTSRHRQTDRYINSLTAYFGRIQDMLL--EINPRISRRFLARDGTAESGGGYSFFG 303
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Acyltransferase (ChoActase/COT/CPT n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HGU7_9ASCO)

HSP 1 Score: 87.0 bits (214), Expect = 5.080e-16
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTVFHAYSPSQIHGRVRVVAAEGASDESGGYS 258
            SNCGNPSLRLFGFGPV  +GFG+GYIIK++ + +  +SK+RQT+RF+  +  +   ++  +   +++ +  VVA      ESGGYS
Sbjct:  602 SNCGNPSLRLFGFGPVSANGFGIGYIIKDDSISICASSKHRQTERFLVTLESYLIEIYRIFK--EVNSKSDVVAPIDTKIESGGYS 685
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CN32_RHIO9)

HSP 1 Score: 86.3 bits (212), Expect = 8.980e-16
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTV----FHAYSPSQIHGRVRVVAAEGASDESGGYSMW 264
            SNCGNP+LRLFGFGPVV +GFG+GYIIK++++  V +SK+RQT+R +  ++++   V     +   PS +  R R++A E   D   GY+ +
Sbjct:  545 SNCGNPALRLFGFGPVVANGFGIGYIIKDDRISFVASSKHRQTERLLQTLQKYLIDVKAMLLNEKYPSGVSQRQRILALEEEYDHHDGYTYY 636
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Acyltransferase (ChoActase/COT/CPT n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HAY6_SYNRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.240e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFF----DTVFHAYSPSQIHGRVRVVAAEGASDESGGYSMW 264
            SNCGNP+LRLFGFGPVV DGFG+GYIIKE+ +  V +SK+RQT+R +  +  +       +     P  +  R R++A E A +++ GY  +
Sbjct:  573 SNCGNPALRLFGFGPVVSDGFGIGYIIKEDGIAFVASSKHRQTERLLATLEAYLLEVQQMLLKEKYPGGLSQRQRLLAMEEAHEQTNGYGYF 664
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BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7T6_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-15
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTV----FHAYSPSQIHGRVRVVAAEGASDESGGYSMW 264
            SNCGNP+LRLFGFGPVV DGFG+GYIIKE+ +  V +SK+RQT+R++  +  +   V         P  +  R R++A E A +   GYS +
Sbjct:  569 SNCGNPALRLFGFGPVVSDGFGIGYIIKEDGIAFVASSKHRQTERYLATLEAYLLDVQGMLMKEKYPGGLSQRQRLLAMEEAHEMINGYSYF 660
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Match: Carn_acyltransf (domain-containing protein n=5 Tax=Mucor TaxID=4830 RepID=A0A168JXF0_MUCCL)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-15
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKIREFFDTV----FHAYSPSQIHGRVRVVAAEGAS-DESGGYSMW 264
            SNCGNP+LRLFGFGP+V DGFG+GYIIKE+ +  V +SK+RQT RF+  ++ +   V         P+ I  R RV+  + A  D + GYS +
Sbjct:  579 SNCGNPALRLFGFGPIVSDGFGIGYIIKEDGIAFVASSKHRQTQRFLDTLKTYLTDVQALLLKEKYPTGISQRQRVLEMQEAEMDNNNGYSYF 671
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6900.15038.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Carnitine3.090e-5697.00O-acyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
Carn_acyltransf6.870e-5495.10domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Carn_acyltransf6.950e-1846.00domain-containing protein n=5 Tax=Rhizopus TaxID=4... [more]
Carn_acyltransf1.090e-1648.91domain-containing protein n=2 Tax=Lichtheimia TaxI... [more]
Hypothetical2.710e-1645.05protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Acyltransferase5.080e-1646.51ChoActase/COT/CPT n=1 Tax=Metschnikowia bicuspidat... [more]
Carn_acyltransf8.980e-1644.57domain-containing protein n=1 Tax=Rhizopus delemar... [more]
Acyltransferase1.240e-1544.57ChoActase/COT/CPT n=1 Tax=Syncephalastrum racemosu... [more]
Carn_acyltransf1.680e-1546.74domain-containing protein n=1 Tax=Mucor circinatus... [more]
Carn_acyltransf1.680e-1547.31domain-containing protein n=5 Tax=Mucor TaxID=4830... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6900contigE_fasciculatus_S2_contig6900:4714..6867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score202.2
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D8LBB6
Preferred nameYAT1
Model size700
KEGG rclassRC00004,RC00037
KEGG koko:K00624
KEGG ReactionR02396
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004092,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006066,GO:0006575,GO:0006577,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0009437,GO:0009987,GO:0016406,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901615
Exons3
EggNOG free text desc.carnitine O-acyltransferase activity
EggNOG OGsKOG3719@1,KOG3719@2759
EC2.3.1.7
Cds size303
COG Functional cat.I
BiGG ReactioniMM904.YAR035W,iND750.YAR035W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842347.766887-CDS-E_fasciculatus_S2_contig6900:4713..47981696842347.766887-CDS-E_fasciculatus_S2_contig6900:4713..4798Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6900 4714..4798 +
1696842347.7887604-CDS-E_fasciculatus_S2_contig6900:5598..57081696842347.7887604-CDS-E_fasciculatus_S2_contig6900:5598..5708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6900 5599..5708 +
1696842347.801528-CDS-E_fasciculatus_S2_contig6900:6362..64701696842347.801528-CDS-E_fasciculatus_S2_contig6900:6362..6470Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6900 6363..6470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842347.8121605-UTR-E_fasciculatus_S2_contig6900:6470..68671696842347.8121605-UTR-E_fasciculatus_S2_contig6900:6470..6867Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6900 6471..6867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6900.15038.1prot_E_fasciculatus_S2_contig6900.15038.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6900 4714..6470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6900.15038.1

>prot_E_fasciculatus_S2_contig6900.15038.1 ID=prot_E_fasciculatus_S2_contig6900.15038.1|Name=mRNA_E_fasciculatus_S2_contig6900.15038.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
SNCGNPSLRLFGFGPVVRDGFGVGYIIKENQLKLVVTSKNRQTDRFVGKI
REFFDTVFHAYSPSQIHGRVRVVAAEGASDESGGYSMWGSFRNNKGDPLL
*
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mRNA from alignment at E_fasciculatus_S2_contig6900:4714..6867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6900.15038.1 ID=mRNA_E_fasciculatus_S2_contig6900.15038.1|Name=mRNA_E_fasciculatus_S2_contig6900.15038.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2154bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6900:4714..6867+ (Ectocarpus fasciculatus EfasUO2)
AGCAATTGTGGCAACCCGTCGCTGCGGCTCTTCGGCTTTGGGCCGGTCGT
CCGGGATGGTTTCGGCGTTGGCTACATCATCAAAGGTATTGAGAACCGTT
GTAACTCTTTCGGTTTTCAGCTGTTGTTGTTGTTGGTGTTGTTGTTGTTG
TTGCTATTGTTCACTTGTAGGTTGTTGCTGCTTCTGTTTTCTTGGCTGAT
AAAGTATGCTGATCTGCACCCAAGACCTCCTCTTTCCCGTTTCCCGTTTG
CTCGAAGGCAAAGAAACATATTTCTGTGCTCACAAACGCACCCATTAGCA
GTAGGAAGAAAAACAACGACAGCAACAACAAATATCAACAAAAGAGACAA
GAACCTCAACATCGACAACGTGAGACAATGGACAAAGCCCCCGTACTTGT
TTGACGGGCTCAATCCAAAGCCGCCGATGAGAACCATTACCGATTCATAC
GGTTCTTTTGTTTTTCGGTTTTCGGCACAATTTCCCCCCCGTAAACGCCC
GAAAACCCGAAGAGGCCCCTTATTCCACCGCGCACGCTCAAAATCGAGAA
CCCCCAAGTCAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAA
CCGCTAAGTCATGCGAAACATAAGAGTACGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTC
CCCCCCTCCTCTCTTCCTTTCTTTTCTCTTNNNNNNNNNNGGGGTGGTGT
TGTGAGCCCCCAATCAGTCAAAAAAAAAAAAAAAAGCCCCCCCCCCCCCC
CCCCCCCCCCAAGTCTCTCTTTCCGACGCTGCGGCACCCCTTCCCCGCGA
TTGTTGTCAATGTCTTTCGCTTGTTCGCTTGACAGAGAACCAGCTGAAGC
TGGTGGTGACGTCGAAGAACAGGCAGACGGATAGGTTCGTCGGCAAGATC
CGGGAGTTTTTCGACACCGTCTTCCACGCCTACAGCCCGTCACAGGTGTG
TGTGGATGTGTGTGACGTCGTCACGTTGATCAAAGGCCCGTCGGTAGCAG
AGGTCCGACACATGCGTTCACCCTGCAGTTGTTGTTGTTGTTGTTGTTGT
TGTTGCTGTGCTTCTCTCTGTCGCTGGTTTACGCTCTGTGCTTCCGTCTG
TGCCAGCACACGAAGGAGAGAGCGCAGAATGGTGAAGGTGTTTTTCTTTT
CTCGCTCCTTACGATACCCCGGATGGATTTCCTTTCCACCCGGCATCAGC
CGTACCATTATTGTGTCTTGTGTACCCGTGCGGATTCGCCTCAATTGTCT
ACGCAATGGACACAATCGTCACTCGCACTCGCCTACAATCGGTGTCGGTT
TATCTTCCACATTTGATGATGATGTAGCGGGCCAAGTCCGTCCCTGACGA
CCAGCCCAAAGCCGAAGAATCTCAGCGAAGGTCGCCTCCCAGTTCGTTTG
TTGGGATAGACATATAATATGTTCGACGTCGGGGCGAGCCTTTGTCTATA
CAACGTCGCTCGTGCACGCTTGTGCTTTTCATCTCTCGTCTTGTACGCGA
GCTGAGGCCGCGTTCTGGTCGCTTGTCACCCCCCGCGCGCGCTTGCTTCC
TCTCTCGTTGTGCAACGTCTGACGATCTGCCTGTGCTGTGCGCTAACAGA
TCCATGGCAGGGTGAGAGTTGTGGCGGCCGAAGGTGCTTCGGACGAGTCT
GGCGGCTACTCGATGTGGGGGTCTTTCAGAAACAACAAAGGAGATCCGCT
TCTCTGACGGTGGCGTGGTCTTGCCTCACACCATGCTTTGTCTACAATTA
GCCTCCTGGCCTAGTCGGATGGCCCGGCCCGCTGCACAGCTTGCTGGCGG
AATAGATACCCGAGTGTGTCAGGACGCTGCCAGTGTGTACACGCGGCTAC
GAGATATGTAATTTTTGGGACTATTGACTATTGCATCCCACACTGGCGCT
CACAAGGCCGACGCAAAGAACCACGATATAGGATAGAGCACAGCTGGCAG
CCGTGGCTACCCCAGGCGGTTGTTGCCGCGGTGCCGGTGCTACAAGTTTG
GTTCGATGCGATGTGCGCGGGGGCTGTTCGGCAAGGTCGGGCGTGCACTC
CGTGTATCTTTCGGGTGTCAGCGATTTGTTGTTGAGAAAAAGAGTCGAAT
ATGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6900:4714..6867+

>mRNA_E_fasciculatus_S2_contig6900.15038.1 ID=mRNA_E_fasciculatus_S2_contig6900.15038.1|Name=mRNA_E_fasciculatus_S2_contig6900.15038.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6900:4714..6867+ (Ectocarpus fasciculatus EfasUO2)
AGCAATTGTGGCAACCCGTCGCTGCGGCTCTTCGGCTTTGGGCCGGTCGT
CCGGGATGGTTTCGGCGTTGGCTACATCATCAAAGAGAACCAGCTGAAGC
TGGTGGTGACGTCGAAGAACAGGCAGACGGATAGGTTCGTCGGCAAGATC
CGGGAGTTTTTCGACACCGTCTTCCACGCCTACAGCCCGTCACAGATCCA
TGGCAGGGTGAGAGTTGTGGCGGCCGAAGGTGCTTCGGACGAGTCTGGCG
GCTACTCGATGTGGGGGTCTTTCAGAAACAACAAAGGAGATCCGCTTCTC
TGA
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