mRNA_E_fasciculatus_S2_contig6900.15037.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig6900.15037.1
Unique Name	mRNA_E_fasciculatus_S2_contig6900.15037.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carnitine (O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.560e-33
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT
Sbjct:  375 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 432

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L403_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.210e-32
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQLIVFENG+AGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT
Sbjct:  620 GTCTNRWYDKLQLIVFENGSAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 677

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XZ13_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 3.040e-22
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQ+IV ENG+AG+NFEHT VDGHTVLRF SD++ D I RFA  + S T
Sbjct:  309 GTCTNRWYDKLQIIVCENGSAGINFEHTGVDGHTVLRFVSDIYTDTILRFAQTINSQT 366

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Acyltransferase (ChoActase/COT/CPT n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U9P4_9BASI)

HSP 1 Score: 97.1 bits (240), Expect = 4.160e-22
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQLIV  NGAAG+NFEHT VDGHTVLRFA DV+A++I RFA  + + T
Sbjct:  328 GTCTNRWYDKLQLIVCANGAAGINFEHTGVDGHTVLRFAGDVYAELILRFAKSINNRT 385

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=4 Tax=Aspergillus TaxID=5052 RepID=A0A1L9VAQ5_ASPGL)

HSP 1 Score: 97.1 bits (240), Expect = 4.170e-22
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFAN 156
            GTCTNRWYDKLQ+IV +NG+AG+NFEHT VDGHTVLRFASDV+ D I RFAN
Sbjct:  363 GTCTNRWYDKLQIIVCKNGSAGINFEHTGVDGHTVLRFASDVYTDTILRFAN 414

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8G7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.500e-22
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTC NRWYDKLQ+IV +NG AGVNFEH+ VDGHTVLRFASDVF D + RFA  ++ TT
Sbjct:  297 GTCMNRWYDKLQIIVCDNGVAGVNFEHSVVDGHTVLRFASDVFTDTVIRFAQSISGTT 354

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UTC8_9BASI)

HSP 1 Score: 96.7 bits (239), Expect = 5.690e-22
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQLI+  NGAAG+NFEHT VDGHTVLRFA DV+A++I RFA  + + T
Sbjct:  331 GTCTNRWYDKLQLIICANGAAGINFEHTGVDGHTVLRFAGDVYAELILRFAKSINNRT 388

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VRE5_9BASI)

HSP 1 Score: 96.7 bits (239), Expect = 5.690e-22
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTCTNRWYDKLQ+IV  NGAAG+NFEHT VDGHTVLRFA+D++ ++I RFA  + S T
Sbjct:  336 GTCTNRWYDKLQIIVCSNGAAGINFEHTGVDGHTVLRFAADIYTELIMRFAKSINSAT 393

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Carn_acyltransf (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5G5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.770e-22
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTC NRWYDKLQ+IV +NG AGVNFEH+ VDGHTVLRFASDVF D + RFA  ++ TT
Sbjct:  145 GTCMNRWYDKLQIIVCDNGVAGVNFEHSVVDGHTVLRFASDVFTDTVIRFAQSISGTT 202

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BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Match: Aste57867_5845 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFY0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.720e-22
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1

Query:    1 GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRFANHLTSTT 174
            GTC NRWYDKLQ+IV +NG AGVNFEH+ VDGHTVLRFASDVF D + RFA  ++ TT
Sbjct:  293 GTCMNRWYDKLQIIVCDNGVAGVNFEHSVVDGHTVLRFASDVFTDTVIRFAQSISGTT 350

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig6900.15037.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Carnitine	4.560e-33	100.00	O-acyltransferase n=1 Tax=Ectocarpus siliculosus T...	[more]
Carn_acyltransf	1.210e-32	98.28	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Carn_acyltransf	3.040e-22	72.41	domain-containing protein n=1 Tax=Bifiguratus adel...	[more]
Acyltransferase	4.160e-22	74.14	ChoActase/COT/CPT n=1 Tax=Pseudomicrostroma glucos...	[more]
Carn_acyltransf	4.170e-22	80.77	domain-containing protein n=4 Tax=Aspergillus TaxI...	[more]
Carn_acyltransf	5.500e-22	72.41	domain-containing protein (Fragment) n=1 Tax=Aphan...	[more]
Carn_acyltransf	5.690e-22	72.41	domain-containing protein n=1 Tax=Jaminaea rosea T...	[more]
Carn_acyltransf	5.690e-22	70.69	domain-containing protein n=2 Tax=Tilletia TaxID=1...	[more]
Carn_acyltransf	6.770e-22	72.41	domain-containing protein n=1 Tax=Aphanomyces inva...	[more]
Aste57867_5845	7.720e-22	72.41	protein n=1 Tax=Aphanomyces stellatus TaxID=120398...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6900	contig	E_fasciculatus_S2_contig6900:1..894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	127.9
Seed ortholog evalue	1.6e-27
Seed eggNOG ortholog	2880.D8LBB6
Preferred name	YAT1
Model size	174
KEGG rclass	RC00004,RC00037
KEGG ko	ko:K00624
KEGG Reaction	R02396
KEGG Pathway	ko04146,map04146
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003824,GO:0004092,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006066,GO:0006575,GO:0006577,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0009437,GO:0009987,GO:0016406,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901615
Exons	2
EggNOG free text desc.	carnitine O-acyltransferase activity
EggNOG OGs	KOG3719@1,KOG3719@2759
EC	2.3.1.7
Cds size	174
COG Functional cat.	I
BiGG Reaction	iMM904.YAR035W,iND750.YAR035W
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842347.7089937-CDS-E_fasciculatus_S2_contig6900:0..119	1696842347.7089937-CDS-E_fasciculatus_S2_contig6900:0..119	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig6900 1..119 +
1696842347.7284849-CDS-E_fasciculatus_S2_contig6900:839..894	1696842347.7284849-CDS-E_fasciculatus_S2_contig6900:839..894	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig6900 840..894 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6900.15037.1	prot_E_fasciculatus_S2_contig6900.15037.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig6900 1..894 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig6900:1..894+
coding sequence from alignment at E_fasciculatus_S2_contig6900:1..894+

protein sequence of mRNA_E_fasciculatus_S2_contig6900.15037.1

>prot_E_fasciculatus_S2_contig6900.15037.1 ID=prot_E_fasciculatus_S2_contig6900.15037.1|Name=mRNA_E_fasciculatus_S2_contig6900.15037.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=58bp
GTCTNRWYDKLQLIVFENGAAGVNFEHTWVDGHTVLRFASDVFADVIYRF
ANHLTSTT

mRNA from alignment at E_fasciculatus_S2_contig6900:1..894+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig6900.15037.1 ID=mRNA_E_fasciculatus_S2_contig6900.15037.1|Name=mRNA_E_fasciculatus_S2_contig6900.15037.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=894bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6900:1..894+ (Ectocarpus fasciculatus EfasUO2)
GGTACGTGCACGAACCGGTGGTACGACAAGCTGCAGCTGATCGTCTTCGA
AAACGGCGCCGCGGGGGTGAACTTCGAGCATACCTGGGTCGACGGACACA
CGGTACTCCGCTTTGCAAGGTGTGTGTGTGTGTCACGCGCGCAATGCGAG
GCTCATTGTTTTTCTGTCAGAACAGCAGCAGTCAAACATAGGTACGTAAA
AAGATTTTTGTTTTAAGTGACGTTTTGGTGTGCTTGATTTGTTTAGTTGG
AGGTTACCATCACCGCCCTCCGCTTCTCTAACTAGGTGTCTTGAGACCGG
TCCGTACCTCGCCAAACGGTGTCGATTGGCTCGGATTACATTGTCAGTTC
CAAGCTCGTTTCGGTGTACGTCTCACATCGGATTACCTTTGGTGCAGCTT
TTATATTGCCCATCTGGAACAGGTTACACAGTGACGATGACCCGGGGCTG
CTTGTTTTTACTTTTTTAGCTTATTTTTTCACCGTTGGAAACAACACTTC
CTGGCCTTTGCTTTTGGCGTATGGCGGTGATTGTCATATCACTTGCCGTT
TGAGGCAGGACGGAAGTAGTGGATCGCAGAGCTAATAGCCGAAACGTTCA
GCACGCGAAGTTAGTAGTAACAGCAGCAACAACAACGACAGCTCCTGTTG
TACCATGCCCTGCTTCGCGAAGGCCAGTCAGTGCACGAAGGCCGCCGAAC
CACCACCATCCCATGACCCCCCTTTTACAAACCCTTGTCCCTCCCACCCC
CCATGGCCGATTTGGCCTCCTGGTGCACTTTTCTTTCCTCCGCGGGATGT
GAACGTCACAACACAACACACACGCTTAATGGTCCGCAGCGACGTGTTCG
CCGACGTGATTTATCGGTTCGCGAACCACCTTACGTCTACCACA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6900:1..894+

>mRNA_E_fasciculatus_S2_contig6900.15037.1 ID=mRNA_E_fasciculatus_S2_contig6900.15037.1|Name=mRNA_E_fasciculatus_S2_contig6900.15037.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=174bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6900:1..894+ (Ectocarpus fasciculatus EfasUO2)
GGTACGTGCACGAACCGGTGGTACGACAAGCTGCAGCTGATCGTCTTCGA
AAACGGCGCCGCGGGGGTGAACTTCGAGCATACCTGGGTCGACGGACACA
CGGTACTCCGCTTTGCAAGCGACGTGTTCGCCGACGTGATTTATCGGTTC
GCGAACCACCTTACGTCTACCACA