mRNA_E_fasciculatus_S2_contig6897.15022.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6897.15022.1
Unique NamemRNA_E_fasciculatus_S2_contig6897.15022.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6897.15022.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.380e-49
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = -2 
Query:    3 TRAAPGHLVSAVLQFRNLTSLVRGKWVSYPPVKATKEGMVRRERYVGWVASGRGNTRISMTGGYAPAPRGQGGGVPAAGRSEHAPSWGGAWSAVGSRETVFSP 311
            TRA PGHLVSAVL+FRNL SL+RG WVSYPP KA KEGMVRRERYVGWVASGRGNTRISMTGGY PAPRGQGGGVPAAGR   APSWG  WSAV SR+TVFSP
Sbjct:  330 TRAVPGHLVSAVLKFRNLASLIRGSWVSYPPFKAMKEGMVRRERYVGWVASGRGNTRISMTGGYTPAPRGQGGGVPAAGRPGRAPSWGDDWSAVDSRDTVFSP 432
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6897.15022.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.380e-4985.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6897contigE_fasciculatus_S2_contig6897:4233..4544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842346.1054163-CDS-E_fasciculatus_S2_contig6897:4232..45441696842346.1054163-CDS-E_fasciculatus_S2_contig6897:4232..4544Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6897 4233..4544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6897.15022.1prot_E_fasciculatus_S2_contig6897.15022.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6897 4233..4544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6897.15022.1

>prot_E_fasciculatus_S2_contig6897.15022.1 ID=prot_E_fasciculatus_S2_contig6897.15022.1|Name=mRNA_E_fasciculatus_S2_contig6897.15022.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
PGLNTVSRLPTADQAPPQLGACSDRPAAGTPPPWPLGAGAYPPVIEIRVF
PRPDATHPTYLSLRTIPSFVALTGGYDTHFPLTRLVKFLNWRTADTRCPG
AALV
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mRNA from alignment at E_fasciculatus_S2_contig6897:4233..4544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6897.15022.1 ID=mRNA_E_fasciculatus_S2_contig6897.15022.1|Name=mRNA_E_fasciculatus_S2_contig6897.15022.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6897:4233..4544+ (Ectocarpus fasciculatus EfasUO2)
CCCGGGCTAAACACGGTCTCCCGGCTGCCCACAGCTGACCAGGCGCCTCC
CCAGCTCGGAGCGTGTTCCGACCGCCCAGCAGCCGGCACACCGCCGCCCT
GGCCCCTGGGGGCTGGGGCATACCCGCCGGTCATCGAGATCCGCGTGTTT
CCCCGGCCGGACGCGACCCATCCGACATATCTCTCTCTTCGGACCATCCC
CTCTTTCGTTGCCTTGACGGGGGGATATGACACCCACTTCCCCCTAACGA
GACTCGTCAAGTTTCTGAACTGGAGGACGGCGGACACGAGGTGCCCAGGC
GCGGCCCTAGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6897:4233..4544+

>mRNA_E_fasciculatus_S2_contig6897.15022.1 ID=mRNA_E_fasciculatus_S2_contig6897.15022.1|Name=mRNA_E_fasciculatus_S2_contig6897.15022.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6897:4233..4544+ (Ectocarpus fasciculatus EfasUO2)
CCCGGGCTAAACACGGTCTCCCGGCTGCCCACAGCTGACCAGGCGCCTCC
CCAGCTCGGAGCGTGTTCCGACCGCCCAGCAGCCGGCACACCGCCGCCCT
GGCCCCTGGGGGCTGGGGCATACCCGCCGGTCATCGAGATCCGCGTGTTT
CCCCGGCCGGACGCGACCCATCCGACATATCTCTCTCTTCGGACCATCCC
CTCTTTCGTTGCCTTGACGGGGGGATATGACACCCACTTCCCCCTAACGA
GACTCGTCAAGTTTCTGAACTGGAGGACGGCGGACACGAGGTGCCCAGGC
GCGGCCCTAGTC
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