mRNA_E_fasciculatus_S2_contig6886.15016.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6886.15016.1
Unique NamemRNA_E_fasciculatus_S2_contig6886.15016.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG6_ECTSI)

HSP 1 Score: 637 bits (1643), Expect = 3.080e-225
Identity = 323/357 (90.48%), Postives = 335/357 (93.84%), Query Frame = 1 
Query:    1 MLDESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLTGEGAGANPGPLSMATPEDEEACRLDFDPKATSSXXXXSQRRYKSPGYYILREILGQGGLFRQIVQVLKGPGRHGDGGVAGLKAARVKSAASTALKQGLMLPGGRKSEADGGSLAPADRF--AGGGGLGGPQQAGLATAPPPAAEPKLDPIEQGGPGPDWSWWRERCV 1065
            MLDE VRRSLTNSG+SFRVLT LT LVTCGVRPSLKGSIYKALAACAKDPETARRIW FIE+AQLVPTGTGRQEG ++GGGM K+A SSS+SQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPY LGEKTRYRGASGIQPYVAYLL CVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLTGEG  A+PGP SMATPEDEEACRLDFDPKA+SS    SQRRYKSPGYYILREILGQGGLFRQ+VQVLKGPGRHGDGGVAGLKAARVK+AASTALKQGLMLPGGRKSEADGGSL PADRF  A GGGLGGPQQAGLAT PPPAAEPKLDP+EQGGPGPDWSWWRER +
Sbjct:    1 MLDEGVRRSLTNSGNSFRVLTTLTNLVTCGVRPSLKGSIYKALAACAKDPETARRIWIFIEEAQLVPTGTGRQEGVIVGGGMAKNANSSSNSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYTLGEKTRYRGASGIQPYVAYLLKCVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLTGEGGSADPGPSSMATPEDEEACRLDFDPKASSSS---SQRRYKSPGYYILREILGQGGLFRQMVQVLKGPGRHGDGGVAGLKAARVKAAASTALKQGLMLPGGRKSEADGGSLTPADRFGAAAGGGLGGPQQAGLATTPPPAAEPKLDPVEQGGPGPDWSWWRERYI 354
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F6_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 1.820e-154
Identity = 233/278 (83.81%), Postives = 241/278 (86.69%), Query Frame = 1 
Query:  244 MVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLTGEGAGANPGPLSMATPEDEEACRLDFDPKATSSXXXXSQRRYKSPGYYILREILGQGGLFRQIVQVLKGPGRHGDGGVAGLKAARVKSAASTALKQGLMLPGGRKSEADGGSLAPADRFA----GGGGLGGPQQAGLATAPPPAAEPKLDPIEQGGPGPDWSWWRERCV 1065
            MV++A S S SQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLL CVLIPELRFADAGERWRVAARVLQVMLTLLRRYPL GEG G NPGP SMATPEDEEACRLDFDP+A SS    SQ R     +    E    GGLFRQ+VQVLKGPGRHGDGGVAGLKAARVK+AASTALKQGLML GGRK+EADGGSLA ADRF      G GLGGPQQAGLAT PPPAAEPKLDP+EQGGPGPDWSWWRERCV
Sbjct:    1 MVRNALSPSASQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLKCVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLAGEGGGVNPGPSSMATPEDEEACRLDFDPRAPSSSSSSSQVRLTVMSFSAALE----GGLFRQMVQVLKGPGRHGDGGVAGLKAARVKAAASTALKQGLMLLGGRKNEADGGSLASADRFGVGAGAGSGLGGPQQAGLATTPPPAAEPKLDPVEQGGPGPDWSWWRERCV 274
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: nuclear (pore complex protein Nup205 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C728B15)

HSP 1 Score: 104 bits (260), Expect = 8.690e-21
Identity = 61/188 (32.45%), Postives = 99/188 (52.66%), Query Frame = 1 
Query:    4 LDESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLRRY 561
            LDE  R +L+ +      +  L  L+TC V  SLK ++   +AA A  P+ +  IW  +E AQ++PT              VKS    +   P G+  E+E+VE+R   YPVT G   L+  L+ H  P NLG  TR+    GI+PY+ ++L+CVL+      + + GE+W++ A   +++  +++ Y
Sbjct:  604 LDEIARITLSENTHYVPTVVILG-LITCSVPASLKAALLNCMAAFATSPDISLNIWQGLEMAQVIPT--------------VKSV---AVYHPSGILMELEEVETRMEEYPVTRGMLTLLDSLLNHPFPNNLGHATRH---PGIEPYLEFVLDCVLLKCNSRAYKNPGEKWKIMALCYKILEKVMKSY 770
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BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: nuclear (pore complex protein Nup205-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0382E8)

HSP 1 Score: 99.0 bits (245), Expect = 7.550e-19
Identity = 64/193 (33.16%), Postives = 100/193 (51.81%), Query Frame = 1 
Query:    4 LDESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLRRYPLTGE 576
            +DE+ R +L  +  S+  LT++  L+ C +  SLK  I + LAA A   ET   +W  +E +Q++ T              VK A  +   Q  GL AE+E++ESR  TYP T  F  L+  L  + +P NLG   R     G +PY+ +L + VL+      + D  E+W+VA+ VLQ+ + LL ++  + E
Sbjct:  600 MDETARIALCEN-PSWVPLTSMFGLLGCSIPTSLKACILETLAAFAMSQETTASMWQSLETSQILQT--------------VKPAGQA--LQESGLLAELEEIESRNETYPETRAFMTLLANLTAYPVPANLGAGYR---VPGFEPYLEFLRDSVLLKFKARAYLDPNEKWQVASGVLQIFVKLLEQFEPSAE 772
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Nuclear (pore complex protein Nup205 n=2 Tax=Nyssorhynchus TaxID=44543 RepID=W5JBM6_ANODA)

HSP 1 Score: 98.2 bits (243), Expect = 1.370e-18
Identity = 56/170 (32.94%), Postives = 92/170 (54.12%), Query Frame = 1 
Query:   58 LTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIPEL--RFADAGERWRVAARVLQVMLTLLRRY 561
            L+ L  L++C V   LK  I + LAA A + E A ++WS +ED Q++ T                   ++S+ Q RG+ +E+E+VESR   YP+T+     +  L++  +P NLGE  R   A GI PY++Y+++ VL+      + D  E+W++  + LQ++   LR Y
Sbjct:  655 LSVLVGLISCSVPIQLKAEIVRTLAALANNFENALQLWSNLEDVQIIST-----------------VPTTSNFQTRGVRSELEEVESRNEAYPLTQAMLDFLAVLMRTTVPENLGEGKR---APGIAPYLSYVIDVVLLQVFSRNYKDPAEKWQLTQKCLQILHCFLRDY 804
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Uncharacterized (protein n=16 Tax=Cellia TaxID=44534 RepID=A0A182V211_ANOME)

HSP 1 Score: 98.2 bits (243), Expect = 1.370e-18
Identity = 60/180 (33.33%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:    7 DESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVM 540
            DE  R +L  S D +  L  L  L++C V   LK  I + LA+ A   E A ++W  +ED+Q+V T                   S+S+ + RG+ +E+E+VESR  T+P+T+    L+  L+   +P +LGE +R   A GI PY++Y++N VL+      + D  E+W++A + LQ++
Sbjct:  604 DELSRIALCES-DKWAPLNVLVGLISCSVPIQLKAEIVRTLASLAGSLENAIKLWHNLEDSQIVNT-----------------IPSTSNFKTRGVISELEEVESRNETFPLTQAMLDLLSSLMSTAIPDDLGEGSR---APGIHPYLSYVVNTVLLRLFSRNYKDGAEKWQLAQKCLQIV 762
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Uncharacterized (protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182S6P3_9DIPT)

HSP 1 Score: 95.9 bits (237), Expect = 7.240e-18
Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 1 
Query:    7 DESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLRRY 561
            DE  R +L  S D +  L  L  L++C V   LK  I + LA  A   E A ++W  +ED+Q++ T                   S+S+ + RG+ +E+E+VESR   +P+T+    L+  L+   +P +LGE +R   A GI PY++Y++N VL+      + D  E+W++A + LQ++   +  +
Sbjct:   90 DEMSRIALCES-DKWAPLNVLVGLISCSVPIQLKAEIVRTLATLAGSLENAIKLWHNLEDSQIINT-----------------VPSTSNFKTRGVISELEEVESRNELFPLTQAMLDLLAALMSTAIPDDLGEGSR---APGIHPYLSYVVNTVLLRLFSRNYKDGAEKWQLAQKCLQIVYMFVNSF 255
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: nuclear (pore complex protein Nup205-like n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H800_ACTTE)

HSP 1 Score: 93.2 bits (230), Expect = 6.400e-17
Identity = 63/187 (33.69%), Postives = 96/187 (51.34%), Query Frame = 1 
Query:    7 DESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLRRY 561
            DE+ R +L  S  ++  + +L  L++C +   LKG I   LAA AK PE A  +W  +E +Q++ T              VK    +  +Q RG+  E+ ++E+R  TYPVT  F  LI+EL    +P  LG   R     G +PY+AYL + V +      + D+ E+W VA  V++V+  LL  Y
Sbjct:  608 DETARITLCES-QTWLPVASLFGLLSCTIDIRLKGCILNTLAAFAKSPEIASSMWLTLELSQILVT--------------VKQPGQT--TQDRGIQVELNEIEARSETYPVTRAFLRLIRELTDIPIPATLGAGYR---VPGFEPYLAYLRDDVFLKFNSRGYQDSKEKWEVACGVVEVLFKLLDDY 774
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Nuclear (pore complex protein Nup205 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BSE4_ARAVE)

HSP 1 Score: 92.4 bits (228), Expect = 1.090e-16
Identity = 59/186 (31.72%), Postives = 94/186 (50.54%), Query Frame = 1 
Query:    4 LDESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLR 555
            LDE  R +L  +     V+  +  LVTC +  +LK ++   LAA A+ PE A  IW  +E AQ++PT              VKS    +   P G+  E+E+VE+R   YPVT     L+  L+ H  P NLG  +R     GI+PY+ ++ + VL+      +   GE+W++ A   +++  +L+
Sbjct:  115 LDEIARITLAENPQLPTVV--ILGLVTCSIPATLKAALINCLAAFAESPEIALNIWQGLEMAQIIPT--------------VKSL---TIYHPSGILMELEEVETRMEEYPVTRAMLSLLDSLLNHPYPSNLGSGSRQ---PGIEPYLQFVRDSVLLRCNSRAYKTEGEKWKIMALCFKILEKVLK 278
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Match: Nucleoporin (205 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210R3N4_MIZYE)

HSP 1 Score: 92.0 bits (227), Expect = 1.550e-16
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 1 
Query:   76 LVTCGVRPSLKGSIYKALAACAKDPETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAEMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLNCVLIP--ELRFADAGERWRVAARVLQVMLTLLRRYPLTGE 576
            LVTC +   LK  +++ LAA A+ P+ A  +W  +E +Q++PT   +  GG+                      E++++ESR   YP+ +GF  LI  L    +P  LG   R   A G  PY+ +L + V +      + + GE+W +AA VL ++  LLR + +  E
Sbjct:  624 LVTCSIPSPLKAELFRTLAAFARSPDIAASLWQTLEVSQILPTIQSKGAGGIQ--------------------VELDEIESRNEEYPMIQGFLALIDTLTDIPVPAGLGAGLR---APGFDPYLLFLRDSVFLRFNSRAYKNPGEKWEIAASVLNILSKLLREHEIVPE 769
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6886.15016.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.080e-22590.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.820e-15483.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
nuclear8.690e-2132.45pore complex protein Nup205 n=1 Tax=Parasteatoda t... [more]
nuclear7.550e-1933.16pore complex protein Nup205-like n=1 Tax=Xenia sp.... [more]
Nuclear1.370e-1832.94pore complex protein Nup205 n=2 Tax=Nyssorhynchus ... [more]
Uncharacterized1.370e-1833.33protein n=16 Tax=Cellia TaxID=44534 RepID=A0A182V2... [more]
Uncharacterized7.240e-1831.02protein n=1 Tax=Anopheles maculatus TaxID=74869 Re... [more]
nuclear6.400e-1733.69pore complex protein Nup205-like n=2 Tax=Actinia t... [more]
Nuclear1.090e-1631.72pore complex protein Nup205 (Fragment) n=1 Tax=Ara... [more]
Nucleoporin1.550e-1630.18205 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210R3N4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6886contigE_fasciculatus_S2_contig6886:139..7887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score642.1
Seed ortholog evalue1.5e-181
Seed eggNOG ortholog2880.D7FNG6
Preferred nameNUP205
Model size1065
KEGG koko:K14310
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000132,GO:0000226,GO:0000278,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007163,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009629,GO:0009790,GO:0009792,GO:0009794,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0022402,GO:0022607,GO:0030010,GO:0031090,GO:0031224,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0040001,GO:0040011,GO:0042330,GO:0042332,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0045995,GO:0046822,GO:0046907,GO:0046931,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051292,GO:0051293,GO:0051294,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0060623,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:1901987,GO:1901990,GO:1902749,GO:1902850,GO:1903047,GO:1903379,GO:2000026
Exons8
EggNOG free text desc.nuclear pore organization
EggNOG OGsKOG1835@1,KOG1835@2759
Cds size1065
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6886.15016.1prot_E_fasciculatus_S2_contig6886.15016.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6886 139..7887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842345.6952195-CDS-E_fasciculatus_S2_contig6886:138..2131696842345.6952195-CDS-E_fasciculatus_S2_contig6886:138..213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 139..213 +
1696842345.7078834-CDS-E_fasciculatus_S2_contig6886:2530..26471696842345.7078834-CDS-E_fasciculatus_S2_contig6886:2530..2647Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 2531..2647 +
1696842345.718512-CDS-E_fasciculatus_S2_contig6886:3829..40031696842345.718512-CDS-E_fasciculatus_S2_contig6886:3829..4003Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 3830..4003 +
1696842345.728989-CDS-E_fasciculatus_S2_contig6886:4533..47011696842345.728989-CDS-E_fasciculatus_S2_contig6886:4533..4701Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 4534..4701 +
1696842345.7501116-CDS-E_fasciculatus_S2_contig6886:5179..53321696842345.7501116-CDS-E_fasciculatus_S2_contig6886:5179..5332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 5180..5332 +
1696842345.7622757-CDS-E_fasciculatus_S2_contig6886:5940..59791696842345.7622757-CDS-E_fasciculatus_S2_contig6886:5940..5979Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 5941..5979 +
1696842345.7737167-CDS-E_fasciculatus_S2_contig6886:7092..72891696842345.7737167-CDS-E_fasciculatus_S2_contig6886:7092..7289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 7093..7289 +
1696842345.7845767-CDS-E_fasciculatus_S2_contig6886:7745..78871696842345.7845767-CDS-E_fasciculatus_S2_contig6886:7745..7887Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6886 7746..7887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6886.15016.1

>prot_E_fasciculatus_S2_contig6886.15016.1 ID=prot_E_fasciculatus_S2_contig6886.15016.1|Name=mRNA_E_fasciculatus_S2_contig6886.15016.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=355bp
MLDESVRRSLTNSGDSFRVLTALTKLVTCGVRPSLKGSIYKALAACAKDP
ETARRIWSFIEDAQLVPTGTGRQEGGVLGGGMVKSAFSSSDSQPRGLFAE
MEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVA
YLLNCVLIPELRFADAGERWRVAARVLQVMLTLLRRYPLTGEGAGANPGP
LSMATPEDEEACRLDFDPKATSSSSSSSQRRYKSPGYYILREILGQGGLF
RQIVQVLKGPGRHGDGGVAGLKAARVKSAASTALKQGLMLPGGRKSEADG
GSLAPADRFAGGGGLGGPQQAGLATAPPPAAEPKLDPIEQGGPGPDWSWW
RERCV
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mRNA from alignment at E_fasciculatus_S2_contig6886:139..7887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6886.15016.1 ID=mRNA_E_fasciculatus_S2_contig6886.15016.1|Name=mRNA_E_fasciculatus_S2_contig6886.15016.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6886:139..7887+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGACGAGAGTGTTCGGCGGTCCTTGACCAACAGCGGCGACAGCTT
CCGGGTTTTGACGGCCTTGACTAAGGTGAGCTGCTGCTGCCGTTGCTGCT
GCTGCTGCCGCCGCAGGCCGCTCGCCCGTTTGGGGTTAATTGAAAATGTT
TGGTTTGATCGCTGCTTGTCGGGTGTGTATGGATGCATGATGCATGTTCC
GGACCGCACACCCTGGACAATAGACCACGTACAGTATGCTGCTGTTGTGT
AGAATTCTATTAAAAATGACGAGTCTACTGCCGTCGGTAGTATCTATCGA
TCGTTGGATTTCTCACAGTATTGCCAAAGACCAAGTCTATCGACAGATAG
CGTGTGCAATCTATTGGGACTTGCAACGTCTTCGATTAACATTCTGCACA
GTCTATTGTAAACACAATGTGTGTCGAGGGCAGCGTGCGCCATCTATTGC
GAGCAGCAAAGTCTATCGGTATGTATTATGCAACTTCTATCGTGGCCAGC
AATGTCCACCAAAAGGCAGTCTGACATTGCATTGCGGCCAGCGATGCCTA
TTGATCGGTGTTGTGCGACGTCCATTGTCGCTGGTAATGTCCACCGATAG
ACAGATAACAAATCTATTGTTGCTAGCAATGTGTTTCGATAGACAGACTG
CGATTCAATGGCGGCTGGCAATGCCTTTCGATAGACGATTTGTGTCTGTC
AAGTGATGACAGCAACGATAATTGGCCCATCTCTCTAGGCAGAAAATCTC
TATTGTTGCTAGCAATGTGTTTCGATAGACAGACTGCGATTCAATTGCGG
CTGGCAATGCCTTTCGATAGACGATTTGTGTCTGTCAAGTGATGACAGCA
ACGATAATTGGCCCATCTCTCTAGGCAGAAAATCCATCATTTCATTGTGA
CCGTTGTGGGACCGGACGTCAGTTGCAACTGCATTCTTTCAGCAGATGCC
GTATGTGTGATGGGCGGGCACCCTGCGTGCGAGTCCATCTGCTTATACCT
TGGACAATAGACCACTAAATAGAACCTTGCGGCTACAGCATCCTTCAAAA
AGTAGCTGACAGTAGACATTGCTGGCTGCCATAGACATGGCAGCCTTTCT
TTCGACGTATATTTTCGACAACAATAGATTTCGCAGGCCGTCGCCCGATA
GACATCTTTGCCTGCAAGATGCTGACCAGCCTCTCGTTAAAAAACGAAAA
TGTTGTCGGCAACAGTAGATTTCGCAGGCCGTCACCCGATAGACATTGTT
GGCTGCAATTTACTTACAAGCCACCCTTCCGAAGATATTTGTGGCAACAG
TAGATTTGTCACGCCGTTTTCCAGTAGACATTGTTGGCAACAATGAGTTC
CGATGGTCGTCCTCCGATAGACATTGTTGGCAACAACAGATTTCGGAGGC
TTTCTTGTGGTAGACATTGTTAAGTAATAGAAGAAGCCTTCGAAACTTGT
TATCGTGCAAGTGGATGTCCTTACAACCTTGGGGATAAAATTGCCGCAGT
AGACAATGTCTATCGATGTTGTGTTTCGAAATCTGTCGCTTTGATGATAT
CTATCGATAGATAGAGCACTTAAGAATGTACAAGTATTGCAGTTAAACGA
GTTGTCGATAACGTTTTCATAGATCCATTGCCGTAGACAATGGACATCGT
AGAACCGTTGAAAGTCTTTTGATCCCTACAACTGATATCGATGGAACCTT
CGCAAATCTGTTGCGGTTGACAATGGATATCGATAGAACCTTTGAACATC
TGTTGTCCTTGGCAATGGATGTCGAAAGTAGCGTTCAAAATCTATTGTTT
TAACAACGGACATCGATAGAACCTTTGAAAATCTGTTGTCCTTGGCAAGG
GGGTTGAAAGAAGCGTTCAAAATCTGTTGTTTTTGACATTGGATATTGAT
AGAAACCTTTAAAAATCCATTGTCCTTGACAGGAGATGTCTATATGTTTC
TCTCGTGGTCCATTGTAACAACAAGAGACCATTGTCCCTCTGTTGTCCAG
GGTGTGCATGTTTGTCGACAATAAATACGGTGTTAGGTCTTCAGGCATCG
CTGGAGGAATCGAATCGTGTCGATCATGTAGACGGGCCCTAATCGCTGGC
TTTTTGCCACACAAGGTAGACAGAACACATGCAATCTACTGTAGAGCGCT
CGTGCGTCACGCCAAGTCTTTAACTTTCGTTCCCATTCCTGGGTTTGGTT
GTTATTGCCATTTTTTTCACAAAAAATTGTTTGTTCTTTTTTTTTTTACG
ATTCTTGTATTCGATCGCGTGTTTTTTTCCCGTTTTTTTTGTTCATTGCC
CTTCCTCTTCCTTCCTTCCTCCGTTCTGTCTTGTTTTGTTTGGGCATCCG
TAACGTCCCTCCTGTGGCATCGACAACAACAAATGGCAACAGCTGGTGAC
CTGTGGCGTGCGGCCGTCCCTGAAGGGATCAATCTACAAGGCCCTAGCGG
CGTGCGCCAAGGACCCGGAGACCGCGCGGCGAATCTGGAGTTTCATCGAA
GACGCGCAGGTACAGAAAGTAAATGGACAAACAGAGTCCGTCGAAAGATG
GAATTGTGGTTCAGTCTGTCTAGTCTGTTGTTGTGGTCGTCTGTGGGCCC
ACCTGCCTTGGTTTGGTGGAGATATGACACACGTTTCGACGCTCGGCACT
AGCGAGTGAGTACATGTGGACGATGTTGGTGACCACCTTATACAAAGGAG
GGAAGAGAAGAATAAAGCTTCCTTCGTCGGTGCTTGCGCACCATCGATCG
ATCGGTCGATAGATGGATTAATTCATTAGTTTCTGGCGCCAACTGTTTGT
TGTGGCTCAAGTTGAAAACGATAGAGCTTTAATGAGACGACACAAGCGTT
GTTGTTCATGTCTGGATATATTTGCGTGTGTGGGATCTCGCGTGCCACGA
CGACATGTTCGCTGGTGCCGCTGATACTTGTGGTGCACGTAGAGCACGTT
GCAATTGCTGCTATCAAGCATTTGGATAGGCTATGTACTACTCGTTGAAG
TTAGGTTCGACACGCACGCAAACCCTTACCCTTTGACCATAATATATATA
TATATTTTTTAATATGACACAACGAATCCATATCTATCCAAGAAAAGAGT
CTTAAGTAAGATAGATTGGCAATGAATTAATCATAGCGTCAGAGGGAGTT
AGGCTACCTGTATTTCCACGAATAAGAGGAGCACACAGCACACGGCACAC
ACCGTAATCTCATCTCCCCTGTGGATAACAGGCTCAACAGTATGGTAGCC
GTCTTGTGTATCTCTCCGTATGTTATGCTGGGAAGATGTAGAAGGAAGGT
GTTGGGGTGATGATGTTGGTTTGTCGGGTGTGTTATTTGTAGCAAGCACC
CTTACCCTTACCCTTGTGGAAGAAGCACGGATAGACACATGTGTTGGTGG
TTTTTATCCCGCTACAAGACTGACGTCTTTTCATTGATCAGCCGGTTAGC
GCGGTCGATGCCAAAACAAAAAAAACAAAAAGCACACACACACACACACA
CACGCCGCCTCCTGCCCTGGTTGTACACCCTTCCCCCCCGCCTCCCTGCC
CTGGGCCGGCGAAAAAAACGGCACACATGTCGCTTCGTCCCGGCATTGTA
GGGATGCGAGGTCAATGGTCTAACGACTGCGGCATGCGTTCACTTGAGTA
CACCCTCCCCGTCGTGCTGCCACCTTTTTTGTCGTCGATAGCTCGTGCCT
ACGGGAACAGGGAGGCAGGAAGGCGGCGTTCTCGGCGGCGGCATGGTGAA
GAGCGCCTTTTCTTCCTCCGACTCTCAGCCTCGGGGACTGTTCGCGGAGA
TGGAGCAGGTGGAGTCACGCGAAAGGACGTACCCGGTGACGGAGGGATTC
TGCTGCCTCATTCAGGTCTGTTTCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGGCGCTGTTGCGGCTGCTGTGACTGTGGTTGGGATTGTTTTTGATCG
TGTTGGTTGTGATGGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGTG
GTTGTGGCTGGTGCTGGCTGGTGTTGTTGTTGTTGTTTGATTCTGGCGGC
GGTGAATTGGTTTGGTGGCATTGTTGGCGCCAATTCCCATTGATCCATTT
GTTCATGAGCTGATTTGACTCGTCACGCTTCTCTCGTTTCCGAGCGCGCC
CATCCTGTGTGAAACCGCACCAAGTCTTGCTTGCTTGCTTGCTTGCGGAA
GATGCCGCACAGCAGCGTTATACACGTGTTTTTCGTGCCTTGTGCTATTT
TGAAACTTGCTTCCTCTTCAAAACAGTCAACAAACCATGAGATATTGAAT
CACGAACTGCATCGCCGCGCCCCACTCTCCATGATTGAAAACACACCTTT
CGCGCGTTTCCCGTGACACTGCGACAATTGTTGGGGGACACACAGGAACT
GGTGCAGCACGACCTGCCGTACAATCTCGGAGAGAAGACGCGGTACCGAG
GGGCGTCGGGCATCCAGCCGTACGTGGCCTACCTGCTGAACTGCGTGCTG
ATCCCGGAGCTGAGGTTCGCTGATGCCGGAGAGAGGTGGAGGGTGGCGGC
GAGGGTGCTCCAGGTGCCTGAGGAGGGGAGGGCGAGAGAATGATCGAAAA
ATTCAAGAATGAAATGTCGTCTGTTCCCCGGGCAGAGAGAGAGAGGGAGT
ATGGGAAGTTGATGTCACGCCGTTATCGTGCTGTTACCATGGCTGCATCG
TAACGTCAAGTCACCCGATCCAATCCAAGAAAGAATGATGGAGCGCATGC
AACTCTTACTCTATCGCACACAAATACCCCTTCTTGACAAAACATCACCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCACCACA
CTCATTCCCCCATGCTCCCACAGCCCAGTCTNNNNNNNNNNCCCGAACCC
TCCTCCCCCCCCCCCTCCCCACCCCCCCCTCTCCCACGCGCACCCACCAC
ACCCCCCCCCCCGCATTGGCCCTCCCAACAAAAAACCCCCCCCCCCCCCC
CCCCCCTCCCACCCCCCCCCAAAAAACAATCGCATGTTTAGGTGATGCTG
ACTCTGCTGAGGAGGTACCCGTTGACAGGGGAAGGCGCCGGCGCCAACCC
GGGACCATTGTCGATGGCTACCCCGGAAGACGAGGAGGCGTGTCGACTCG
ACTTCGACCCCAAGGCGACCTCCTCTTCCTCCTCCTCCTCCCAGGTCAGA
CTTTTGTTATTCCATTGCTTTAGCGCTGTAATAGGTTCGAGGGTCGGGCT
TTTTTCATGTTTCATTGCTGTGTAAATACGCAGGTCAGATTTTGATTTTG
TCGTTTTCTTTAACACTGCTGTACGTACGCATGCGAACGAAAGGTATCCA
CGAAAGGCCGTTGAAGGAAGTTGCTTGCTGCTCTTAGTACAAATTTTCTG
TGTCTACGAAAACGAATACGGCCCATTCCTCTCATGTATCGTATTTTACG
TAGATACAGTAGATACAGGCACTCTCGTCGTCTTTGGTTTCTGGTTGCAC
CAGCCGAAACACGTTGTTAAGGACATGCCATGCCCGCCGAATCGACTGGT
ATGGGTTTTCTGGTTCGTAGGGTAACAGCAGTCCCGGGGCACGTTGGTCA
ATGTTCATGTAGGGCATTGGTGCTAGTATCGATGCTGGGTAGTTTAGTTT
CACACGTTGGACCTCCTTCTCGCAACTGTTGGTCTGTGGGAGGCAAGCGT
TCTGGTTCCTCTCGGTAATTTTCTCTGCTGCCCTTGGTTTCTGCCCCCCT
CCCCCCCCACCTGGCCGTCGGTGGATAACCTTGTCTGCGTTTGTTCGGAC
AGCGGCGGTACAAATCGCCCGGGTACTACATCCTCAGGGAGGTGAGTCCA
GGGTATGTATTGGTATTCACGTCGAATCGAGGCAAAACAAGATGGTGATT
TAATTTAGGTCGATGACGTCATCACTCAACCAACAGCCGTGGGAAGAGTT
AAGAAGAGTTAAGAAGTGCATTCTTGCTGGTTACAAAGTGCATTCTTGCT
GGTTACGAAGTGCATTCTTGCTGGTTACGAAGTGCATTCTTGCTGGTTAC
GAGCTGCATTCTTGCTGGTTACGAAGTGCATTCTTGCTGGTTACGAAGTG
CATTCTTGCTGGTTACGAGCTGCATTCTTGCTGGTTACAAAGTGCATTCT
TGCTGGTTACGAAGTGCATTCTTGCTGGTTACAAAGTGCATTCTTGCTGG
TTACGAAGTGCATTCTTGCTGGTTACGAGCTGCATTCTTGCTGGTTACGA
GCTGCATTCTTGCTGGTTACGAACTGCATTCTTGCTGGTTACGAAGTGCA
TACTATACATCACAGAGTATTCGATACCCGTACAGGGGTAGGCGACGATC
AGGGTCTTGCACCGCCGCGGGTGTGGCAGACTAGTGCTAGTGCTGTATTC
TGTGAGCGCTCGGACGGCATATGAATCTCTTGACTGGCCCACGACACCCG
GGCCACAGAAAACCGTACCGTGGCACCGGTTCCGCATAGATGTCATCGCT
GAGGATCGATTTTGACGGATTTTTTCAACTTGAAACCTTTTGTAACCCCT
ATGGTTTCCGCTCCCACTGACAAACGAAGGAGCGGAAAATTCGAATCCAT
CCTGCCGATGGACGGGCGGAAACCAGTTCAATCCAAAACAGTTTTTTGGC
CTGTTGTGTGTTCCATGTCATGGCATTAGACGACATGACATGGGAACCAG
CTTGAATCGACTTGAATTTGCCGTTGGGTCCCATGGCATCACATGGCATC
ACATGCGTTACATGGTAGCCAACACGACTTGACTGGGCTTGCCGAGAAAT
TTATCGCCCGAACATGACTTGACTTGCCGAGAAATATCTCGCCGATTATG
ATTTGGCTTTAGCGAGAAATAACTCACCCAAAACATGACTGGACTAGACT
GGACGAGAAATTAATCGCCGTGTGCCACGCTGTCTGACCCGGCGGCCTTC
GCAGATCCTGGGGCAGGGGGGACTCTTCCGCCAGATTGTGCAGGTTCTCA
AGGGTCCCGGGCGTCACGGCGACGGCGGCGTGGCGGGGCTCAAGGCGGCG
AGGGTGAAGTCGGCCGCCAGCACGGCGCTGAAGCAGGGTCTGATGCTGCC
CGGTGGCCGGAAGAGCGAGGCGGACGGAGGATCGCTGGCGCCGGCCGACA
GGTATGTTGTATGTGTTCCGTTACGTTTGTACGGTACGGTACGGTACGGT
ACCGGTACGGTATGGTATGGGATTTGGCGTGTTAACTTAGACGGTGTGGT
GTGTCATGTCTTTGGTGCCATGCGGAGTGGAAAACTCATCATTGTTCCCG
TCATGTCTCTCGCCAGTAGGGTTAGTTCCCTGGACAAATCAACCAGGCCC
CAACCCCCCCCCCCCCCGCGCGCGGTCCCTACGGCTGTGTCCACTACTCC
GATTGTTAACTTTTTGCTAGGCCTGTTTTGTCAACCAGCTCCAACCCCCC
TCCCCCCACCCTGCCTACCTATCTGTTCGTTTTTTCATTTTCCTCTCTCT
AATGCGAGTCTGTTCTGTCGCCGTTTCTTTTCCTCACGAATCACCACCAC
CACCACCACCACCACCACCACGCCTCAACCCGGCTTGGTCATTCGCACGC
ACCGCAGGTTTGCCGGCGGCGGCGGCCTGGGGGGCCCGCAACAGGCCGGG
TTGGCGACAGCCCCCCCCCCAGCGGCGGAGCCGAAGCTGGACCCTATAGA
GCAGGGAGGGCCCGGCCCCGACTGGTCTTGGTGGCGCGAGCGGTGCGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6886:139..7887+

>mRNA_E_fasciculatus_S2_contig6886.15016.1 ID=mRNA_E_fasciculatus_S2_contig6886.15016.1|Name=mRNA_E_fasciculatus_S2_contig6886.15016.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1065bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6886:139..7887+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGACGAGAGTGTTCGGCGGTCCTTGACCAACAGCGGCGACAGCTT
CCGGGTTTTGACGGCCTTGACTAAGCTGGTGACCTGTGGCGTGCGGCCGT
CCCTGAAGGGATCAATCTACAAGGCCCTAGCGGCGTGCGCCAAGGACCCG
GAGACCGCGCGGCGAATCTGGAGTTTCATCGAAGACGCGCAGCTCGTGCC
TACGGGAACAGGGAGGCAGGAAGGCGGCGTTCTCGGCGGCGGCATGGTGA
AGAGCGCCTTTTCTTCCTCCGACTCTCAGCCTCGGGGACTGTTCGCGGAG
ATGGAGCAGGTGGAGTCACGCGAAAGGACGTACCCGGTGACGGAGGGATT
CTGCTGCCTCATTCAGGAACTGGTGCAGCACGACCTGCCGTACAATCTCG
GAGAGAAGACGCGGTACCGAGGGGCGTCGGGCATCCAGCCGTACGTGGCC
TACCTGCTGAACTGCGTGCTGATCCCGGAGCTGAGGTTCGCTGATGCCGG
AGAGAGGTGGAGGGTGGCGGCGAGGGTGCTCCAGGTGATGCTGACTCTGC
TGAGGAGGTACCCGTTGACAGGGGAAGGCGCCGGCGCCAACCCGGGACCA
TTGTCGATGGCTACCCCGGAAGACGAGGAGGCGTGTCGACTCGACTTCGA
CCCCAAGGCGACCTCCTCTTCCTCCTCCTCCTCCCAGCGGCGGTACAAAT
CGCCCGGGTACTACATCCTCAGGGAGATCCTGGGGCAGGGGGGACTCTTC
CGCCAGATTGTGCAGGTTCTCAAGGGTCCCGGGCGTCACGGCGACGGCGG
CGTGGCGGGGCTCAAGGCGGCGAGGGTGAAGTCGGCCGCCAGCACGGCGC
TGAAGCAGGGTCTGATGCTGCCCGGTGGCCGGAAGAGCGAGGCGGACGGA
GGATCGCTGGCGCCGGCCGACAGGTTTGCCGGCGGCGGCGGCCTGGGGGG
CCCGCAACAGGCCGGGTTGGCGACAGCCCCCCCCCCAGCGGCGGAGCCGA
AGCTGGACCCTATAGAGCAGGGAGGGCCCGGCCCCGACTGGTCTTGGTGG
CGCGAGCGGTGCGTC
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