mRNA_E_fasciculatus_S2_contig6885.15015.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6885.15015.1
Unique NamemRNA_E_fasciculatus_S2_contig6885.15015.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.370e-62
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1
Query:   13 TQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            TQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPG A+AQLMRTPSLILDERLRREVEECIS+DRDYSPHLDRVRRGVGAEYEF+LQQKLRARGVAFESESDLR
Sbjct:   66 TQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAAIAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLR 170          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDJ1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.260e-15
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   16 QYRKGSRIIDIARQPGLRYSPYLMARILVGAL--EPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            +++KG  +I IA+    R+ P+L+AR +V  +    G  +  L+R P  I D RLRREV+E    D D +P  D +R  +G EYEF+LQ++L A GV +++E DL+
Sbjct:   70 RWQKGEHVISIAK--AFRHPPFLLARGVVERVCHVTGKRIGDLVRHPERITDPRLRREVQEAAEADPDCAPRSDAIREVIGREYEFVLQRRLEALGVPYQTEEDLK 173          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VQM9_CAPO3)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-10
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   46 IARQPGLRYS--PYLMARILV------GALEPGVA-----VAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            IA Q  +RY+  P  +AR+L+      G +  G++     V +LM+ P LI D  LRREV+ CI  D   SP ++RV+  VGAEYE +LQ+KLR  G+ F +E D+R
Sbjct:   99 IAWQLCMRYNIPPCTLARVLLSLFLAQGDVRDGISKKNPRVKELMQRPELIPDLVLRREVQCCIQYDDMTSPLVERVKHCVGAEYEALLQEKLRNLGIPFLNEEDMR 205          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JP20_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-10
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   58 PGLRYSPYLMARILVGALEPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            P  + + Y++ R L    + G  V QL++ P LI D RLR EV   I ED  + PH+D  +  +G EYE +L QKLRA GV F SE  L+
Sbjct:   83 PPTKLARYVLERHL--GEKKGRDVGQLLKKPRLIADARLRHEVTMAIDEDPHFGPHVDAAKHIIGLEYEELLAQKLRALGVPFLSEEQLK 170          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RIY7_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-10
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   16 QYRKGSRIIDIARQPGLRYSPYLMARILVG---ALEPGV----AVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            +Y  G+ ++ IA +  L   P ++AR+++    +L  G         L+R+PSLI D RLR EV   ++ D  Y P +D  RR  G + E +L Q+LRARG+ F SE  LR
Sbjct:   78 RYEGGAHLVAIASE--LDLPPTMLARVVLEERYSLRKGAKGRHGAGALLRSPSLIDDPRLRSEVAAAVASDAAYGPAVDAARRLTGLQQELVLSQELRARGIPFLSEEQLR 186          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SKE2_9METZ)

HSP 1 Score: 63.9 bits (154), Expect = 8.710e-10
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   73 SPYLMARILV----------GALEPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            S +L+ARI+V          G   P   ++  M+  +L+ ++RL REVE+CI  D +Y P ++ V+   G EYE+IL++KL    +AF  E+D+R
Sbjct:   94 SAFLLARIVVERHLAHLHHNGNSPPRTTISNAMKDITLLQNDRLAREVEQCILNDANYGPLIENVKHSTGLEYEYILREKLNNLTLAFLDENDMR 188          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUG6_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 1.190e-7
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   16 QYRKGSRIIDIARQPGLRYSPYLMARILVG---ALEPGV----AVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            +Y  G+ ++ IA +  L   P ++AR+++    +L  G         L+R+PSLI D RLR EV   ++ D  Y P     RR  G + E +L Q+LRARG+ F SE  LR
Sbjct:   66 RYEGGAHLVAIASE--LDLPPTMLARVVLEERYSLRKGAKGRHGAGALLRSPSLIDDPRLRSEVAAAVASDAAYGPA---ARRLTGLQQELVLSQELRARGIPFLSEEQLR 171          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: uncharacterized (protein C15orf41 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BAFE)

HSP 1 Score: 52.4 bits (124), Expect = 2.590e-6
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   64 LRYSPYLMARILV--------GALEPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESD 321
            L  SP ++ARI++        G       ++Q+M+  + I D  L  EV+ C+ ED  Y P +D +RR +G EYE+ LQ+ L ++GV  E+ SD
Sbjct:    7 LNVSPVVLARIILEKHCTDADGKPPSRSMLSQMMKDTATIDDPILADEVQLCVLEDAHYGPVVDSIRRSIGYEYEYKLQEILTSQGVV-EAASD 99          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JXC6_PARCT)

HSP 1 Score: 53.9 bits (128), Expect = 2.790e-6
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   37 IIDIARQPGLRYSPYLMARILVGAL--------EPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGVAFESESDLR 327
            ++ IA++  L  SP ++ARI++           E  V ++ +++  SLI +ERL RE+++C+  D +  P +D ++  VG +YE IL++KL    + F  E+D+R
Sbjct:   82 LLHIAKEIDL--SPCILARIILEEYLSHTYCQGESDV-LSHMIKDTSLIPNERLSREIQQCVLTDENCGPLVDNIKHSVGLQYENILEEKLAEWKIPFLGENDMR 183          
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Match: CDAN1-interacting (nuclease 1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DS21_PARCT)

HSP 1 Score: 50.8 bits (120), Expect = 2.390e-5
Identity = 29/93 (31.18%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   37 IIDIARQPGLRYSPYLMARILV----------GALEPGVAVAQLMRTPSLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKL 285
            ++ IA++  L  SP ++ARI++          G   P   ++ +++  SLI +ERL +E+++C+  D +  P +D ++  VG +YE IL++KL
Sbjct:   82 LLHIAKEIDL--SPCILARIILEEYLSHTYCEGESVPKDVLSHMIKDTSLIPNERLSQEIQQCVLTDENCGPLVDNIKHSVGLQYENILEEKL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6885.15015.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
CDAN1-interacting2.370e-6296.19nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
CDAN1-interacting4.260e-1540.57nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=10... [more]
CDAN1-interacting1.400e-1042.99nuclease 1 n=2 Tax=Capsaspora owczarzaki (strain A... [more]
CDAN1-interacting1.600e-1043.33nuclease 1 (Fragment) n=1 Tax=Chrysochromulina tob... [more]
CDAN1-interacting4.080e-1037.84nuclease 1 (Fragment) n=1 Tax=Emiliania huxleyi Ta... [more]
CDAN1-interacting8.710e-1036.84nuclease 1 n=1 Tax=Trichoplax sp. H2 TaxID=287889 ... [more]
CDAN1-interacting1.190e-736.94nuclease 1 n=1 Tax=Emiliania huxleyi TaxID=2903 Re... [more]
uncharacterized2.590e-636.17protein C15orf41 homolog n=1 Tax=Priapulus caudatu... [more]
CDAN1-interacting2.790e-632.38nuclease 1 (Fragment) n=2 Tax=Paramuricea clavata ... [more]
CDAN1-interacting2.390e-531.18nuclease 1 n=1 Tax=Paramuricea clavata TaxID=31754... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6885contigE_fasciculatus_S2_contig6885:5930..7475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score201.4
Seed ortholog evalue2.1e-49
Seed eggNOG ortholog2880.D7FXX0
Preferred nameC15orf41
Model size330
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Protein of unknown function TPD sequence-motif
EggNOG OGs2R9SY@2759,arCOG04990@1
Ec32 ortholog descriptionProtein of unknown function with TPD sequence-motif
Ec32 orthologEc-16_005150.1
Cds size327
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842345.6373758-CDS-E_fasciculatus_S2_contig6885:5929..60471696842345.6373758-CDS-E_fasciculatus_S2_contig6885:5929..6047Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6885 5930..6047 +
1696842345.6526163-CDS-E_fasciculatus_S2_contig6885:6408..65831696842345.6526163-CDS-E_fasciculatus_S2_contig6885:6408..6583Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6885 6409..6583 +
1696842345.6630673-CDS-E_fasciculatus_S2_contig6885:7439..74731696842345.6630673-CDS-E_fasciculatus_S2_contig6885:7439..7473Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6885 7440..7473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6885.15015.1prot_E_fasciculatus_S2_contig6885.15015.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6885 5930..7473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6885.15015.1

>prot_E_fasciculatus_S2_contig6885.15015.1 ID=prot_E_fasciculatus_S2_contig6885.15015.1|Name=mRNA_E_fasciculatus_S2_contig6885.15015.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp
TDGRTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGVAVAQLMRTP
SLILDERLRREVEECISEDRDYSPHLDRVRRGVGAEYEFILQQKLRARGV
AFESESDLR
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mRNA from alignment at E_fasciculatus_S2_contig6885:5930..7475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6885.15015.1 ID=mRNA_E_fasciculatus_S2_contig6885.15015.1|Name=mRNA_E_fasciculatus_S2_contig6885.15015.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1546bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6885:5930..7475+ (Ectocarpus fasciculatus EfasUO2)
ACCGATGGCAGGACTCAATATCGGAAAGGTTCGAGGATCATCGATATCGC CAGACAACCAGGCCTGCGCTATTCCCCTTACTTGATGGCTAGGATCTTGG TCGGAGCTCTTGAGCCAGGTATACGCGGCAGACGTTCTGCACTCCATCTC TTAGGCTTCCCAATACCATAGACTGTTTGTGAGGCATGCGTTCCAAGAAA CGTCATTTTGATTTTGTTCCAGCTCTGAAAACAGTACCACGATATTCCCG AGAGAAGGTGCAGGCATTGCTAGCTGCTGTCATGGTACGGCGCAAGATGT ACACGGTGTTACAGTACGTTCCTGACGCGTTTGGGTCTTATGTTTCCATT TATCCGACATGTGATTTTGCTGCCATTCTCAAGGTCTGTGATGATTCGAA CCGATGGACGTGGTGTCGAATCTGCGTTAGTTTCTTGCTCGGTGGCGAAC CGTATTTCGTTCTTGGTCTCTGCATGCAGGAGTTGCTGTAGCGCAGTTGA TGCGAACGCCCTCTCTCATCTTGGACGAGCGGTTACGACGTGAGGTGGAG GAGTGCATATCTGAAGACAGGGACTACTCGCCACACCTCGACAGAGTCAG GAGAGGCGTGGGAGCCGAGTATGAGTTCATCTTGCAGCAGAAGCTGCGCG CCAGGTGATGTTCTGAAAATCCTCTAGCCCTCCCTCCCGTGTCATTGTTG ACAACTCATTTTCGCTCATGCCTCAACCACCGTAGCCCGTTTCTCGCCTG GAATAGGGGTATGGAGAATGTCGACTTACGCCCACTAAACTGTTCCGTAC GTAAATCGCGTCTGTTCTGTGATAGCAACCTCGTAAAATGTAAAATGTCG CGGAAAGGAGAAATTTTGAGCGGTGAGTGGCAGACAAAACCGCACCTTCG CTCTAGGTCTCGCCCCCCCGCCGTCACAATATGTAGATGTCGCTGGTGAT GCATCGGCATTTCGTTGTTGCCGAGTTACTGTTTGACAGCTCCAAGAAGC TTATGTCCTGCACTCTTGTTTCACGTTAGTAGTCTCCAACTACAAATGTA TCGGGATTTTTTCTACGAGTGTGCATCTTCGAAAGTGCTGGTGTTGGAGG GTAGTTGAGAATGCGTCGCCTGCAGGCACGAAGCATCTACATGTATGTAC AAGCCGTGTAGCGCTTTGTCTTTGCAGTACGTGGTGGGATTGCGTATCGA GTGAGAACGAGGGCGATCCGGTGCTATGTTTACGTTTCCTTAACCCCACC CATCCAGACACTTGACAAACTCTGTTTCGTTTCACATCCGCAGAAAATGG CAGTGCAAAGTACGCTTTCTTATCTCCCCCCGCCCGGTTCTTCTGCATGA CGTGAACCTGTTTATCACTGTTTTGGCCGTCTGTCTCGACACACTCCGGG GTTTCCAGCAACTTTGTGCGTGTGATACGAACCGCTAAAATAATCATCGA CCAAGACTGCTGTGGTTGTACCGCTTAAAGAAGTACCGACCGAACTGCGG CTATATACAGGGGAGTCGCCTTCGAGTCGGAATCCGATTTGAGAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6885:5930..7475+

>mRNA_E_fasciculatus_S2_contig6885.15015.1 ID=mRNA_E_fasciculatus_S2_contig6885.15015.1|Name=mRNA_E_fasciculatus_S2_contig6885.15015.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6885:5930..7475+ (Ectocarpus fasciculatus EfasUO2)
ACCGATGGCAGGACTCAATATCGGAAAGGTTCGAGGATCATCGATATCGC
CAGACAACCAGGCCTGCGCTATTCCCCTTACTTGATGGCTAGGATCTTGG
TCGGAGCTCTTGAGCCAGGAGTTGCTGTAGCGCAGTTGATGCGAACGCCC
TCTCTCATCTTGGACGAGCGGTTACGACGTGAGGTGGAGGAGTGCATATC
TGAAGACAGGGACTACTCGCCACACCTCGACAGAGTCAGGAGAGGCGTGG
GAGCCGAGTATGAGTTCATCTTGCAGCAGAAGCTGCGCGCCAGGGGAGTC
GCCTTCGAGTCGGAATCCGATTTGAGA
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