mRNA_E_fasciculatus_S2_contig6877.15007.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6877.15007.1
Unique NamemRNA_E_fasciculatus_S2_contig6877.15007.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 683 bits (1762), Expect = 1.460e-246
Identity = 335/357 (93.84%), Postives = 342/357 (95.80%), Query Frame = 1
Query:   43 MRCSVFLACIALTPGVAFHPNHQARLRMQQGFGKQTQSKTPAKLKTXXXAPPPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAPGGKATDFPVEVVDRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTELQSATTSSQFQQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVRRFAEAGVR 1113
            MRCSV LAC+ALTPGVAF+PN+QARLRMQQGFGKQ++S TPAKLKT   AP PAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAP GKAT FPVEV DRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRR+G LAPTELQSATTSSQ QQ  TSTTWFHHYASAPELVAKASLLLGVDDY KWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY RRFAEAGV+
Sbjct:    1 MRCSVLLACVALTPGVAFNPNNQARLRMQQGFGKQSRSNTPAKLKTPAKAPYPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAPAGKATAFPVEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQCQQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAEAGVK 357          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.050e-74
Identity = 159/402 (39.55%), Postives = 204/402 (50.75%), Query Frame = 1
Query:  139 GKQTQSKTPAKLKTXXXAPPPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQ-------------KAPGGKATDFPVEVVDRIRERHGFEHF-------------------------------------------------------DEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMST----------------LKKSGRRRGSLAPTELQSATTSSQFQQ--QRTSTTWFHHYASAPELVAKASLLLGVD-DYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            G+  Q   P +  T   A   A P  T  R G+LP+D F+ FPPL+P+  +++               +  G+    P +V++ IR RHG E F                                                          LFPG+RLLHA+P V  V  FFT +ECD YI+ S                             P   +SAT  +      QRTSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   ASKGGQR AT+LVYLT M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G + ++K+IAQLW  ++ Y P+VP+ + HE A   + ++
Sbjct:  173 GESQQQLQPERQPTARLA---AAPAATAARGGQLPDDDFATFPPLSPDTLKSIMGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEF 570          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 3.310e-71
Identity = 131/247 (53.04%), Postives = 161/247 (65.18%), Query Frame = 1
Query:  391 LFPGIRLLHADPVVFEVEGFFTPQECDAYIAMST-------------LKKSGRRRGSLAPTELQSATTSSQFQQ--QRTSTTWFHHYASAPELVAKASLLLGVD-DYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            LFPG+RLLHA+P V  V  FFT +ECD YI+ S                      GS  P   +SAT  +      QRTSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   AS+GGQR AT+LVYLT M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G + ++K+IAQLW  +  Y P+VP+ + HE A   + ++
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGS-GPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEF 344          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.570e-71
Identity = 132/264 (50.00%), Postives = 168/264 (63.64%), Query Frame = 1
Query:  310 GGKATDFPVEVVDRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTELQSATTSSQFQQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYV 1086
            G  AT  P+  VD + +   F+ F        R+LH DP+V  V+ FFT +ECD YIAMS    +G + G    T   +    +  + QRTSTTWFHHY + PEL+AK+S L G+DD   +EEPQTVRY+P ++F WHLDAL P     SKGGQRTAT+LVYLT++    GGAT FRDLGP     L+V+PKKG  L+FFP+ GG   +PFD R LHAGEVV    K+ +K+IAQLW  +  Y P+VP  + H AA +PI  YV
Sbjct:  183 GFSATATPMATVD-VSKLPPFDKF--------RVLHIDPLVIAVDDFFTHEECDKYIAMSD-PTAGNKDGDAVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVSADCKS-DKWIAQLWLREDSYEPTVPPENVHAAATEPISQYV 435          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.400e-68
Identity = 127/245 (51.84%), Postives = 159/245 (64.90%), Query Frame = 1
Query:  388 KLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLK----KSGRRRGS-LAPTELQSATT---SSQFQQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            K F   R+LH DP+V  V+ FFTP+ECDA IA ST       +  + G+ L P ++  + T    S+ + QRTSTTWFHHYA  PEL+AKA  L+G++D   +EEPQTVRYR  E F WHLDAL P+   A KGGQR AT+LVYLT++    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG    P D R LH GE V   +  ++K+IAQLW  + PY P+ P G+SH +A  PI DY
Sbjct:  233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVAS-DAEQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 225 bits (574), Expect = 2.620e-65
Identity = 129/280 (46.07%), Postives = 168/280 (60.00%), Query Frame = 1
Query:  277 PEQKQTLQKAPGGKATDFPVEVVDRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRR--GSLAPTELQSATT---SSQFQQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECG-ASKGGQRTATVLVYLTNMHANGGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVR 1089
            P      Q   GG A+     +   + E   FE F        R+LH DP+V  V+ FFT +ECD Y+ MS   ++ + +  G+L P  L  + T    S+ + QRTSTTWFHHYA  PEL+A+A+ LLG+    ++EEPQTVRYR  E+F WHLDAL P     +S  GQR +T+LVYLT++ +  GGAT FRDLG   PL+VRPKKG  L+FFPS GG    PFD R LH GE VG+ +   EK+IAQLW  ++ Y P+ P GS H  A   I +Y +
Sbjct:  200 PAVSDDSQSRVGGAASSHDCSID--LNELPPFEQF--------RVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGE-DAPNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 218 bits (555), Expect = 5.090e-65
Identity = 118/238 (49.58%), Postives = 151/238 (63.45%), Query Frame = 1
Query:  394 FPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTEL-QSATTSSQF--QQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            F   R+LH DP+V  V+ F T  ECD  +A++   K  +   + AP ++ QS T       + QRTSTTWFHHY   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL ++    GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFD R LHAGE V   ++  +K+IAQLW  +  Y P+ P G++H AA   I  Y
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANT-APMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 216 bits (550), Expect = 6.490e-64
Identity = 117/235 (49.79%), Postives = 150/235 (63.83%), Query Frame = 1
Query:  394 FPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTEL-QSATTSSQF--QQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPI 1074
            F   R+LH DP++  ++ F TP ECD YI++++  K  +   + AP E+ QS T       + QRTSTTWFHHY     L+AKAS LLG+    +WEEPQTVRYR  E+F WHLDAL PSE     GGQR AT+LVYL ++    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG    PFD R LHAGE V   +   +K+IAQLW  +  Y P+ P G+SHEAA + +
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKNANT-APMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSDESD-DDKWIAQLWLREHVYTPTAPPGNSHEAAVEAV 289          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 8.960e-64
Identity = 118/238 (49.58%), Postives = 151/238 (63.45%), Query Frame = 1
Query:  394 FPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTEL-QSATTSSQF--QQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            F   R+LH DP+V  V+ F T  ECD  +A++   K  +   + AP ++ QS T       + QRTSTTWFHHY   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL ++    GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFD R LHAGE V   ++  +K+IAQLW  +  Y P+ P G++H AA   I  Y
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKNANT-APMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358          
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.350e-61
Identity = 120/255 (47.06%), Postives = 153/255 (60.00%), Query Frame = 1
Query:  394 FPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRRGSLAPTELQSATTS---------------SQFQQQRTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKG-GQRTATVLVYLTNMHANGGGATAFRDLG---------PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1083
            F   R+LH DP+V  ++ FFT +ECD Y+ +S   +  +   + A  E     T+               S+ + QRTSTTWFH+Y   PEL+AKAS LLG++   ++EEPQTVRYR  E+F WHLDAL P E     G GQR AT+LVYLT++ A  GGAT FRDLG         PL+VRPKKG  L+FFPS GG  G+PFD R LH GE V + +   EK+IAQLW  ++ Y P+ P G+SH  A   I  Y
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGLEGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAE-DAENEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRY 457          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6877.15007.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fe2OG1.460e-24693.84dioxygenase domain-containing protein n=2 Tax=Ecto... [more]
Fe2OG1.050e-7439.55dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Fe2OG3.310e-7153.04dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Hypothetical3.570e-7150.00protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical3.400e-6851.84protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Fe2OG2.620e-6546.07dioxygenase domain-containing protein n=1 Tax=Thal... [more]
Hypothetical5.090e-6549.58protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical6.490e-6449.79protein (Fragment) n=1 Tax=Helicotheca tamesis Tax... [more]
Hypothetical8.960e-6449.58protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.350e-6147.06protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6877contigE_fasciculatus_S2_contig6877:3097..6834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score639.8
Seed ortholog evalue7.6e-181
Seed eggNOG ortholog2880.D8LRR7
Model size1268
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Cds size1080
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842344.8638809-UTR-E_fasciculatus_S2_contig6877:3096..32421696842344.8638809-UTR-E_fasciculatus_S2_contig6877:3096..3242Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6877 3097..3242 -
1696842344.912097-UTR-E_fasciculatus_S2_contig6877:6792..68341696842344.912097-UTR-E_fasciculatus_S2_contig6877:6792..6834Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6877 6793..6834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842344.8767092-CDS-E_fasciculatus_S2_contig6877:3242..35751696842344.8767092-CDS-E_fasciculatus_S2_contig6877:3242..3575Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6877 3243..3575 -
1696842344.8908474-CDS-E_fasciculatus_S2_contig6877:4520..49701696842344.8908474-CDS-E_fasciculatus_S2_contig6877:4520..4970Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6877 4521..4970 -
1696842344.9024265-CDS-E_fasciculatus_S2_contig6877:6495..67921696842344.9024265-CDS-E_fasciculatus_S2_contig6877:6495..6792Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6877 6496..6792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6877.15007.1prot_E_fasciculatus_S2_contig6877.15007.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6877 3243..6792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6877.15007.1

>prot_E_fasciculatus_S2_contig6877.15007.1 ID=prot_E_fasciculatus_S2_contig6877.15007.1|Name=mRNA_E_fasciculatus_S2_contig6877.15007.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=360bp
MRCSVFLACIALTPGVAFHPNHQARLRMQQGFGKQTQSKTPAKLKTPAKA
PPPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAPGGKATDFPVEV
VDRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMST
LKKSGRRRGSLAPTELQSATTSSQFQQQRTSTTWFHHYASAPELVAKASL
LLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLV
YLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVL
HAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVRR
FAEAGVRPE*
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mRNA from alignment at E_fasciculatus_S2_contig6877:3097..6834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6877.15007.1 ID=mRNA_E_fasciculatus_S2_contig6877.15007.1|Name=mRNA_E_fasciculatus_S2_contig6877.15007.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3738bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6877:3097..6834- (Ectocarpus fasciculatus EfasUO2)
CTGTGCGTGGAGACATACATCAGGAAAGAGTTGGTGTCAAAGATGCGGTG CTCCGTGTTTTTAGCGTGTATTGCGCTGACACCAGGCGTAGCTTTCCACC CAAATCATCAAGCGCGGTTGCGCATGCAGCAGGGCTTTGGGAAGCAAACA CAGAGCAAGACGCCAGCAAAGCTCAAGACGCCAGCAAAGGCACCACCCCC GGCCGTTCCGAAACAGACTCCCGTGAGAGCAGGAGAACTGCCAGAAGATG CCTTCTCGCAGTTTCCGCCTTTGACCCCGGAGCAGAAGCAAACCCTCCAG AAAGCTCCAGGGGGTAAGGCGACGGACTTCCCTGTCGAGGTGAGGATGCA ACTAACTGCTGCTACTGCTATCATGTTGGCGGTACACACGATACTTACGC AGTATGCAGCTTCGACCACGCCGCGTTTTACGAGCCCTCCAGTTTCCATC ATGTTTTGGTTGGTATTATGGATAGCGTGGCAGACATGCGATGCGAACTT GAAGTACAGGGGACAAAGAAACGTTCCGCCTGATCGAAACATCCAAGTAC CGCGGACCAGCGTTCAAATCTCACGTCGGGTCAGCCCAGGGCTCCGGTTG GTTCAGCCCAAGCCATAGGTTCATGTGTGGCCAACAATGGACGACTTGCC CTTTGTCCAGATGTCTGCTGAAGTCATGTGTATGGCCTCACGTCATTGGC CGCGATTTGTTGCGATGGCCAGTCTGTGCCTCTTGACTGCGTTTTCGACT TGTCACAATCAACAGCAGGTTGCAGGACAGGCCTAGACTACAGCAGTATG CCGTTCACGAAAATAATCGTGATCTGAAGCCTTTCCGTTCATGTCCGCGG CTCATGTGAGTTAGGTACAATGACGTGATATCGTTTTGCAAGACCTGCTG AAGGCAACGTGTGACCTCGTGGCGTTGATCCTTGTGGATGCCGACAATTT GGCGTGGCGCCTCTTCACTTTCCAAACTTGATCGCCTGTGGCATTGGATG GGACCCCCACACCCCCACCCACCCACCGCCATGATTCCAATAAACACTGT TGTATTGCTAGGGCCCAGAGTTTGGCCTCTCACCCTTAACTTTGTGCCAA ACGGCATTTCTGGTGAACAGGCTGTGGTTTCCGCTTAAGAAAACACCGCT TGTTGACTGTGTTGTGCAGTTCTTGAAGAGGTGAAGACCCAAATAGGATT CTCAGGAGAACTGTTGACAGTTCGGCCTCTACAGCAGTGACGCAGCAACT GGTCGGCGCACCACTCGCACTGACCTACGGCAGTCTGAATCCCACCACAA CGATGTCACAACGATGTCACAAGTTATGAAGGAGGTCCGATTTTCGGAAG ACGACTCGAAGACCTTCAATAGCTCCGATGGGGCGACTGCTTTGCGCACG TTTGCTCGCCACACTGCCCAGGAGGCGACTTCAAAGGCAGCAAAGGAGGG TGTCACAGGGAGCCGACTGAAAAAATGGGATAAGAGCCCGTCATGTTGCG GCTACAAGCGGGCACCAACTAGGAATGTTCATCTGAGCATGTGGCGGAGT ACCCTGTCATGCCGCTCCAAATCTCGATTGTCCGTGTAACTCTTTGAAAA TTATCGTTGTTCGATGCAGCGGGTTGACGTTTGTTCCCAGACAACGTCCA CATCCTGACGAGCGCATAGAGGTTTTTCAGCATGACGTGGCAGTCGTGAC CTACACTCTGTTGACGTCTTCGAGTCGCCACCCCCGCCGAGCCAGTCCAA TACTTCAGTATTTGCAAGCATTCACTTCGGAAAGGAAGAGACCTTTTCGA CACATGGTTTCATTCGTACCGCTGACGGCCGCACACCGCTGTGTCCTGTG TGCGCGCTCTCCAGGTGGTGGATCGGATTAGAGAACGGCACGGCTTCGAG CACTTCGACGAAAAGCTCTTCCCGGGCATCCGTCTTCTACACGCCGACCC CGTTGTGTTTGAAGTGGAGGGATTTTTTACGCCTCAAGAGTGCGATGCGT ACATCGCGATGTCCACGTTGAAAAAATCGGGGCGGCGAAGGGGAAGCCTC GCGCCTACGGAGCTGCAAAGCGCAACTACTAGCTCCCAGTTCCAGCAGCA GCGGACGTCAACCACTTGGTTTCACCATTACGCGTCGGCCCCAGAGCTGG TGGCGAAGGCATCGTTGCTCTTGGGTGTAGACGACTACTGCAAGTGGGAA GAGCCTCAGACTGTCCGATACCGACCAGGCGAGAGATTCAATTGGCACTT GGATGCGCTCCCTCCCAGCGAATGCGGAGCGAGCAAAGGGGGTCAACGAA CGGCTACGGTCCTTGTGAGTACGCATACGTGGCATGAAGTGTCGCGCTTT CCCCCCGTTTCTCTCCCTCGGCATGGGGTTACCCAACCTCTCCCTGCTGG CTGGGTCTTTTCGGTATGTAGTCTCTAGCCTAAACACCTGTACTGTTCGA GGGTCGCGTGTCTTCCTGGCTTATTCCATGTAGCCAACGGTAGTTATGAG AGATCGTGACTGGTAAGGGCATGGTTGGTCCGAACTAGGTGCCTGGATGG GGATCGAAATCTGCCAGTATATCCACTGGAAAAAGTTATGATGTTGACAA CTAGAACATGGCCGGCTGGCCTGACCTATACATCCAGGGCGTTCTCTTTC GTGTCTTTCCAGGTACGGGTCCGAGTTTCCGTATTCACAAGCTTACCCAT GGTCAGGAACACGCATAACACTTAATACCCAGGGAGAGTTCACCGCTCGC GAAAACTAAGGATGTAAAAGTATTATAGCACAAACCGAACAAAAATTGCG AGACAGGACCGAAACGAGCCCTAAAAAGGACTATATAGCACTCTATAAAC TAATTCCATATGAGTTTCCATAAGACTTCCAGAGAGAGCTCATGAGAGCA CCCTATCAGGGGAAGATGCAAGACTAGAGAAAGGCCATTCATCCGCATGC CGCCCAGGGAGACTCTGTTGCAGATAAATTAGTGACAGGTATCTTTGGAA CGGGCCTTGGTTTGAGGGCCTCGCTGCCTCGCTCAGCAGCAATACTTGTT TTCGACTCGTGTGGAAATGTCAACACGACCGGGCACTTCCACTCAACTTG CACTTGTAGAGAAGAAGAGATCGTGTCCGGGAGGGAAGCTATCTCGTATA TTTACCGACAACTCGCTTGCGGTTGACAGTGTCGCACTTTTGGCATGAGT GGACCAAGTTTAACACTGCCCTAATCTTCCGCCATGTTCCACAACGTTTG TTTACCCAGGTGTACTTGACAAATATGCACGCAAACGGCGGAGGGGCGAC GGCATTTCGCGATCTGGGGCCTCTGCGTGTTCGGCCCAAGAAGGGGAAAT GCTTGGTATTTTTCCCCTCGTTTGGGGGGGAGGCTGGCAGCCCCTTCGAC AGCAGGGTTCTGCACGCGGGGGAGGTTGTGGGCCAAGGCAATAAGGCCAA AGAGAAGTATATTGCGCAGCTCTGGTGTCACAAGAAACCGTACCCGCCGT CGGTGCCTGAGGGATCTTCCCACGAGGCAGCCGAGAAACCGATTGTCGAC TACGTAAGGCGTTTCGCGGAGGCAGGAGTGAGGCCGGAGTGATGCTGCTG CGCATTGAGCCCCCTGTGTTGCGTTTTGTGTTCAAGCGACGGGTGTAGCT AAGAACAACCGTACACCCGCTTATGCTTGTAATGAGCCGCGGAGCGAGCG AAGCGAGCGAACTTTTTTCCCTTCTTCTCCCAGGAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6877:3097..6834-

>mRNA_E_fasciculatus_S2_contig6877.15007.1 ID=mRNA_E_fasciculatus_S2_contig6877.15007.1|Name=mRNA_E_fasciculatus_S2_contig6877.15007.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6877:3097..6834- (Ectocarpus fasciculatus EfasUO2)
ATGCGGTGCTCCGTGTTTTTAGCGTGTATTGCGCTGACACCAGGCGTAGC
TTTCCACCCAAATCATCAAGCGCGGTTGCGCATGCAGCAGGGCTTTGGGA
AGCAAACACAGAGCAAGACGCCAGCAAAGCTCAAGACGCCAGCAAAGGCA
CCACCCCCGGCCGTTCCGAAACAGACTCCCGTGAGAGCAGGAGAACTGCC
AGAAGATGCCTTCTCGCAGTTTCCGCCTTTGACCCCGGAGCAGAAGCAAA
CCCTCCAGAAAGCTCCAGGGGGTAAGGCGACGGACTTCCCTGTCGAGGTG
GTGGATCGGATTAGAGAACGGCACGGCTTCGAGCACTTCGACGAAAAGCT
CTTCCCGGGCATCCGTCTTCTACACGCCGACCCCGTTGTGTTTGAAGTGG
AGGGATTTTTTACGCCTCAAGAGTGCGATGCGTACATCGCGATGTCCACG
TTGAAAAAATCGGGGCGGCGAAGGGGAAGCCTCGCGCCTACGGAGCTGCA
AAGCGCAACTACTAGCTCCCAGTTCCAGCAGCAGCGGACGTCAACCACTT
GGTTTCACCATTACGCGTCGGCCCCAGAGCTGGTGGCGAAGGCATCGTTG
CTCTTGGGTGTAGACGACTACTGCAAGTGGGAAGAGCCTCAGACTGTCCG
ATACCGACCAGGCGAGAGATTCAATTGGCACTTGGATGCGCTCCCTCCCA
GCGAATGCGGAGCGAGCAAAGGGGGTCAACGAACGGCTACGGTCCTTGTG
TACTTGACAAATATGCACGCAAACGGCGGAGGGGCGACGGCATTTCGCGA
TCTGGGGCCTCTGCGTGTTCGGCCCAAGAAGGGGAAATGCTTGGTATTTT
TCCCCTCGTTTGGGGGGGAGGCTGGCAGCCCCTTCGACAGCAGGGTTCTG
CACGCGGGGGAGGTTGTGGGCCAAGGCAATAAGGCCAAAGAGAAGTATAT
TGCGCAGCTCTGGTGTCACAAGAAACCGTACCCGCCGTCGGTGCCTGAGG
GATCTTCCCACGAGGCAGCCGAGAAACCGATTGTCGACTACGTAAGGCGT
TTCGCGGAGGCAGGAGTGAGGCCGGAGTGA
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