mRNA_E_fasciculatus_S2_contig6874.15006.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6874.15006.1
Unique NamemRNA_E_fasciculatus_S2_contig6874.15006.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Putative (scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.450e-49
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSE 267
            MLLTESMNAGAHGHIHELLGGAWSSDW GF+NRTE+I+LPF HTIVPLMKYLWR  YLQCET CDFSV WADCRCTLSAEAVAGQTPSE
Sbjct:  304 MLLTESMNAGAHGHIHELLGGAWSSDWSGFYNRTEKIILPFAHTIVPLMKYLWRTEYLQCETTCDFSVSWADCRCTLSAEAVAGQTPSE 392          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.840e-45
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVLWADCR-CTLSAEAVAGQTPSEASARSANLHNNSTLPASKHRTIE 336
            MLLT+SMNAGAHGHI ELL G WSS W GF+NRTEEIVLPFVHTI+PLM+YLWRA+YLQC+T  +   L    + CTLSAEAVAGQTPSE      + H+NSTLP SKHR +E
Sbjct:    6 MLLTDSMNAGAHGHIRELLDGTWSSYWSGFYNRTEEIVLPFVHTILPLMEYLWRADYLQCKTTYELQRLVGGLQVCTLSAEAVAGQTPSE------DKHDNSTLPGSKHRPVE 112          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Hypothetical (tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.330e-22
Identity = 47/81 (58.02%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVL-WADCRCTLSAE 240
            M LTES N GAHG IHELLGGAWSS+   +  RT ++V PFVH  VPL+K LWR  Y+QC   C   V  W DC CT S E
Sbjct:  300 MALTESFNDGAHGEIHELLGGAWSSEATAYSERTSDLVQPFVHVAVPLLKMLWRTGYMQCPETCALDVTPWEDCACTCSEE 380          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-21
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVL-WADCRCT 228
            M LTES N GAHG IHELLGGAWS +   +  RT ++V PFVH  VPL+K LWR  Y+QC  +C F V  W DC CT
Sbjct:  493 MALTESFNDGAHGEIHELLGGAWSLEATAYAERTSDVVQPFVHVAVPLLKMLWRTGYIQCPEECAFGVTPWEDCACT 569          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.160e-19
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSEASARSANLHNNSTLPASKHRTIERLLSAPRASHICG 375
            M L+ ++ + AHGHIHE++GGAWS +      RT E+VLPF+H I    K LWRA+YL C   C + V W +C+C+  A A++G++P E   + A L + S+    KH  +   L A +   + G
Sbjct:  251 MSLSSALKSSAHGHIHEIVGGAWSMEAGVVAKRTTELVLPFLHEIYA--KELWRADYLVCPKSCSYDVPWVECQCSCDATALSGKSPLEV-LKDAGLLSGSSFFYDKHLELIENLEATQEDTLAG 372          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Tyrosinase-like (protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.360e-19
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSEASARSANLHNNSTLPASKH-RTIERLLSAPRASHICG 375
            M L+ ++   AHGHIHE++GGAWS +      RT ++VLPF+H +    K LWRA+YL C   C  +  W +C+C+  A A+AG++P E   + A L + S+    KH + IE L +A +   + G
Sbjct:  392 MSLSAALGTSAHGHIHEIVGGAWSMEAGVVARRTTDLVLPFLHVVQIYTKKLWRADYLVCPESCSNNAPWMECQCSCDATAMAGKSPLEV-LKDAGLLSGSSFFYDKHLKLIENLDAATQEGTLAG 516          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Tyrosinase-like (protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.820e-11
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   19 MNAGAHGHIHELLGGAWSSDWFG-----FFNRTEEIVLPFVHTIVPLMKYLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSE 267
            +NA AHGHIHE +GG+W+  +FG          ++ V+ F H I  L K LWR+ +L C   C     W DC+C   A A+  ++ ++
Sbjct:  399 LNAAAHGHIHETVGGSWNH-YFGDEAKELDEEQDDSVMTFAHEIQALSKELWRSGFLDCPDTCSMDTPWEDCQCQCDAGAIGSRSAAQ 485          
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Match: Tyrosinase_Cu-bd (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L614_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.310e-8
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    1 MLLTESMNAGAHGHIHELLGGAWSSDWFG-----FFNRTEEIVLPFVHTI-----------VP----LMKYLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSE 267
            M  ++ +NA AHGHIHE +GG+W+  +FG          ++ V+ F H I           VP    L K LWR+ +L C   C     W DC+C   A A+  ++ ++
Sbjct:  282 MSFSKVLNAAAHGHIHETMGGSWNH-YFGHEASELDEEQDDSVMTFAHEIQASDSSNNGNAVPGYEALSKELWRSGFLDCPDTCSMDTPWQDCQCQCDAGAIGSRSAAQ 389          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6874.15006.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Putative2.450e-4989.89scytonemin-related tyrosinase n=1 Tax=Ectocarpus s... [more]
Uncharacterized3.840e-4569.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical4.330e-2258.02tyrosinase-like protein F21C3.2 in chromosome I, p... [more]
TYR1.210e-2158.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TYR1.160e-1939.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tyrosinase-like2.360e-1938.89protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Tyrosinase-like3.820e-1136.36protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Tyrosinase_Cu-bd1.310e-832.11domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6874contigE_fasciculatus_S2_contig6874:2002..3209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score96.7
Seed ortholog evalue8.8e-18
Seed eggNOG ortholog2880.D7FSM9
Model size398
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2CZRH@1,2SBDH@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003550.1
Cds size396
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842344.806517-CDS-E_fasciculatus_S2_contig6874:2001..21391696842344.806517-CDS-E_fasciculatus_S2_contig6874:2001..2139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6874 2002..2139 +
1696842344.8175173-CDS-E_fasciculatus_S2_contig6874:2696..28361696842344.8175173-CDS-E_fasciculatus_S2_contig6874:2696..2836Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6874 2697..2836 +
1696842344.8277605-CDS-E_fasciculatus_S2_contig6874:3091..32091696842344.8277605-CDS-E_fasciculatus_S2_contig6874:3091..3209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6874 3092..3209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6874.15006.1prot_E_fasciculatus_S2_contig6874.15006.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6874 2002..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6874.15006.1

>prot_E_fasciculatus_S2_contig6874.15006.1 ID=prot_E_fasciculatus_S2_contig6874.15006.1|Name=mRNA_E_fasciculatus_S2_contig6874.15006.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
MLLTESMNAGAHGHIHELLGGAWSSDWFGFFNRTEEIVLPFVHTIVPLMK
YLWRANYLQCETKCDFSVLWADCRCTLSAEAVAGQTPSEASARSANLHNN
STLPASKHRTIERLLSAPRASHICGGGAKPRQ
back to top

mRNA from alignment at E_fasciculatus_S2_contig6874:2002..3209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6874.15006.1 ID=mRNA_E_fasciculatus_S2_contig6874.15006.1|Name=mRNA_E_fasciculatus_S2_contig6874.15006.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1208bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6874:2002..3209+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGCTGACGGAGTCGATGAACGCCGGCGCGCACGGGCACATCCACGA GCTCCTCGGGGGAGCATGGTCCTCGGACTGGTTCGGATTTTTTAACAGAA CGGAGGAGATCGTCCTCCCGTTCGTGCACACGATTGTGGTGAGCACGTAT CTTGGCTTGTTGTGCATGGTGAGTCTGAGGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTCGTCGTGGTCATGGTGTTGCTATGATTGTCGT TATTGTCGTTGTTGTTGTCGTTTCTGTTTTGCGGTGGTGCTCCCCTTTCG TCCGTGACGATTCGGCCAAGAGACCGGCTCAGACGAACCAGCCAAAACGA GAGCGGACAGCATTTGCCGACAACAGTTCTGGGCTGTTCAAGCAAACTAG GGTGGTGGGTAGCTTTTCATGCTTGTTGACTTTCCTCTGTGCGTGCAGCA TGAGGTAAAGCGTGCTCCCTTGCCACCCCTTCCTCACCGCTCACTACGTA TCAAGCACCCGAGCTTACGGGAACGTCAAACCAACTGGCGCTGCTTTCTG AGGCGTTTTCCCTTGTGTCAATCAAGGTCCTATGGCAACCTCCGCTGCCC GCCACTTCCGTTTCCACTCTGTGTCGCTGTCTTCGCCAAAACCAGCCTCT GATGAAATATCTTTGGAGAGCGAACTACCTGCAGTGCGAGACGAAGTGCG ACTTCAGCGTCTTGTGGGCGGACTGTAGGTGCACCCTCAGCGCCGAAGCT GTGGCGGGGCAAACACCATCAGAGGCAAGCGCTCGGTCTCCCTGAATTCG TCAACAATGCTCTTGTCTTCGCGGCAGAAAGGTCGAAGCGGGAGAGTTTG GCATTGGCGATTCGTTCAGGCTCGGTGTTCTGTTCGTTTTGCGAACACAA TACCTCGTGTTTCGCCACCTCTAGCACACTTCTTGGGTTGTTCGTGTTGA GCCAACGGGTGTTTGTTGCCCGTTTCATCGCACGGGACGAGGAACAACGT AGCGCCAAACGTTATGGCCTGGCCTTCACGATGCGGCCAGCTCAGCAAAT TTACACAACAACAGCACTTTGCCCGCGAGCAAGCACCGCACCATCGAGAG ATTGTTGAGCGCGCCTCGAGCGTCCCACATTTGCGGGGGTGGCGCAAAGC CACGCCAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6874:2002..3209+

>mRNA_E_fasciculatus_S2_contig6874.15006.1 ID=mRNA_E_fasciculatus_S2_contig6874.15006.1|Name=mRNA_E_fasciculatus_S2_contig6874.15006.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6874:2002..3209+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGCTGACGGAGTCGATGAACGCCGGCGCGCACGGGCACATCCACGA
GCTCCTCGGGGGAGCATGGTCCTCGGACTGGTTCGGATTTTTTAACAGAA
CGGAGGAGATCGTCCTCCCGTTCGTGCACACGATTGTGCCTCTGATGAAA
TATCTTTGGAGAGCGAACTACCTGCAGTGCGAGACGAAGTGCGACTTCAG
CGTCTTGTGGGCGGACTGTAGGTGCACCCTCAGCGCCGAAGCTGTGGCGG
GGCAAACACCATCAGAGGCAAGCGCTCGCTCAGCAAATTTACACAACAAC
AGCACTTTGCCCGCGAGCAAGCACCGCACCATCGAGAGATTGTTGAGCGC
GCCTCGAGCGTCCCACATTTGCGGGGGTGGCGCAAAGCCACGCCAG
back to top