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Homology
BLAST of mRNA_E_fasciculatus_S2_contig6868.14999.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI) HSP 1 Score: 506 bits (1304), Expect = 4.540e-166 Identity = 324/426 (76.06%), Postives = 332/426 (77.93%), Query Frame = 1
Query: 1 QELIATTDAAGIVRTYRPLLPRGGSRDNNPGDGAPXXXXXXXEARRFELVVECRLGARPVSCEFGSGARGAESGGERR----GTGEVLRTCTARGVLRLWPTASLPTRPMRTPPPPAPTRLPEDHEALAPLPHPSNAXXXXXXXXXXXXXXXXRNPELPHAA---AAVAGAEQENRDPSDPFSRWTAMDAKGSKGAGVVRVGGSDGGGEEEPTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSSSSTNNHQQRGDWEEDNXXXXXXXXXXXXXXXXXXXXXXXX---MRVSGATGPPRRRLRQTWGTSASSPRGSSSRTRRGCSMDASDDEVFVAPSRMKEPSLWSTAAEQAELERRMAEASTCRHDEFDGRAVPEPAAPAYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPVRKGKQ 1248
QELIA TDAAGIVRTYRPLLPRGGS DNNP DGAP EARRFELVVECRLGARPVSCEFGSG RG ESGG+RR G GEVLRTCTARGVLRLWPTASLPTRPMR PP APTRLP+ HEALAPLPHPSNA XXXXXXXXXXXXX A AG EQENRDPSDPFSRWTA+DAKG +G G+V VGG +GG EEEP+ARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGS XXXXXXXXXXXX XXXX MR SGATGPPRR LRQTWGTSASSPRGS R RRG S DASDD FVAPSRM+EPSLWSTAAEQAELERRM E EFDG VPEP AP YRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRP RKGKQ
Sbjct: 260 QELIAATDAAGIVRTYRPLLPRGGSTDNNPSDGAPPTAAAAAEARRFELVVECRLGARPVSCEFGSGPRGVESGGDRRRGVGGEGEVLRTCTARGVLRLWPTASLPTRPMRPPPSSAPTRLPDYHEALAPLPHPSNAGTDXXXXXXXXXXXXXXXXXXXXXXXXXAMAAGTEQENRDPSDPFSRWTAIDAKG-RGPGLVGVGGGEGGEEEEPSARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELGAPRXXXXAPTPMRASGATGPPRR-LRQTWGTSASSPRGS--RARRGSSTDASDDASFVAPSRMQEPSLWSTAAEQAELERRMTE-------EFDGSGVPEPVAPVYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPKRKGKQ 674
BLAST of mRNA_E_fasciculatus_S2_contig6868.14999.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE) HSP 1 Score: 444 bits (1142), Expect = 3.060e-142 Identity = 308/419 (73.51%), Postives = 318/419 (75.89%), Query Frame = 1
Query: 1 QELIATTDAAGIVRTYRPLLPRGGSRDNNPGDGAPXXXXXXXEARRFELVVECRLGARPVSCEFGSGARGAESGGERR---GTGEVLRTCTARGVLRLWPTASLPTRPMRTPPPPAPTRLPEDHEALAPLPHPSNAXXXXXXXXXXXXXXXXRNPELPHAAAAVAGAEQENRDPSDPFSRWTAMDAKGSKGAGVVRVGGSDGGGEEEPTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSSSSTNNHQQRGDWEEDNXXXXXXXXXXXXXXXXXXXXXXXXMRVSGATGPPRRRLRQTWGTSASSPRGSSSRTRRGCSMDASDDEVFVAPSRMKEPSLWSTAAEQAELERRMAEASTCRHDEFDGRAVPEPAAPAYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPVRKGKQ 1248
QELIA TDAAGIVRTYRPLLPR S DNNPGDGAP EARRFELVVECRLGARPV G GEVLRTCTARG+LRLW TASLPTRPMR P APTRLP+DHEALAPLPH SNA XXXXXXXXXXX GAEQENRDPSDPFSR TA+DA GS G+GVV VGG + G E E TARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGS + N XXXXXXXXXXXXXXXXXXXXXXXXMR SGA G P R LRQTWGTS SSPR S+R RRGCSMDASDD FVAPSRM+EPSLWSTAAEQ ELERRM EA+ EFDG AVPEPAAP YRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRP+RKGKQ
Sbjct: 242 QELIAATDAAGIVRTYRPLLPRRVSTDNNPGDGAPPTTAAAAEARRFELVVECRLGARPVXXXXXXXXXXXXXXXXXXXVGGEGEVLRTCTARGILRLWLTASLPTRPMRPPXXSAPTRLPDDHEALAPLPHTSNAGTDSSXXXXXXXXXXXXXXXX--XXXXXVGAEQENRDPSDPFSRSTAIDATGS-GSGVVGVGGGERGEEVELTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSGN--NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRASGANGTPGR-LRQTWGTSTSSPR--SNRARRGCSMDASDD-AFVAPSRMQEPSLWSTAAEQVELERRMTEAT----HEFDGGAVPEPAAPTYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPMRKGKQ 647
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2291 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | WD40/YVTN repeat-like-containing domain |
| Ec32 ortholog | Ec-17_001990.1 |
| Cds size | 1173 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842343.960067-UTR-E_fasciculatus_S2_contig6868:3936..4739 | 1696842343.960067-UTR-E_fasciculatus_S2_contig6868:3936..4739 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig6868 3937..4739 - |
| 1696842344.0117984-UTR-E_fasciculatus_S2_contig6868:7793..8108 | 1696842344.0117984-UTR-E_fasciculatus_S2_contig6868:7793..8108 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig6868 7794..8108 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842343.9693117-CDS-E_fasciculatus_S2_contig6868:4739..4861 | 1696842343.9693117-CDS-E_fasciculatus_S2_contig6868:4739..4861 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6868 4740..4861 - |
| 1696842343.9778094-CDS-E_fasciculatus_S2_contig6868:5209..5327 | 1696842343.9778094-CDS-E_fasciculatus_S2_contig6868:5209..5327 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6868 5210..5327 - |
| 1696842343.9861147-CDS-E_fasciculatus_S2_contig6868:5788..5947 | 1696842343.9861147-CDS-E_fasciculatus_S2_contig6868:5788..5947 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6868 5789..5947 - |
| 1696842343.9946127-CDS-E_fasciculatus_S2_contig6868:6378..6774 | 1696842343.9946127-CDS-E_fasciculatus_S2_contig6868:6378..6774 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6868 6379..6774 - |
| 1696842344.003254-CDS-E_fasciculatus_S2_contig6868:7415..7793 | 1696842344.003254-CDS-E_fasciculatus_S2_contig6868:7415..7793 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6868 7416..7793 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6868.14999.1 >prot_E_fasciculatus_S2_contig6868.14999.1 ID=prot_E_fasciculatus_S2_contig6868.14999.1|Name=mRNA_E_fasciculatus_S2_contig6868.14999.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=391bp
MRTPPPPAPTRLPEDHEALAPLPHPSNADTNSSSGGGGGGGGGNRNPELP HAAAAVAGAEQENRDPSDPFSRWTAMDAKGSKGAGVVRVGGSDGGGEEEP TARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSSSSTNNHQQRGDW EEDNDGDSKEEDYDELEAPRPPPPAPTPMRVSGATGPPRRRLRQTWGTSA SSPRGSSSRTRRGCSMDASDDEVFVAPSRMKEPSLWSTAAEQAELERRMA EASTCRHDEFDGRAVPEPAAPAYRAAAAAAVNIHPLAKTFEGLVPVSLDA PPPRPVRKGKQQEPPVQSAGTAHHGGRPRVRRDGARLQCHHGLWQHRRSH VATRGVGVVRRSKNVRRAGPFFHGVGSSVVSGTKVVEYTT* back to topmRNA from alignment at E_fasciculatus_S2_contig6868:3937..8108- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig6868.14999.1 ID=mRNA_E_fasciculatus_S2_contig6868.14999.1|Name=mRNA_E_fasciculatus_S2_contig6868.14999.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4172bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6868:3937..8108- (Ectocarpus fasciculatus EfasUO2) CAGGAACTGATCGCTACGACAGACGCGGCCGGTATCGTCAGGACATACCG
GCCGCTCCTCCCCCGCGGGGGCTCGAGAGATAACAACCCTGGCGATGGTG
CGCCCCCGCCGCCGCCGGCAGCGGCCGAGGCCCGGCGGTTCGAGCTGGTT
GTGGAATGCCGCCTGGGAGCTCGCCCGGTTTCGTGCGAGTTTGGGTCGGG
GGCCCGGGGAGCGGAGAGCGGTGGCGAGAGGCGGGGGACGGGCGAGGTTC
TTCGGACGTGCACGGCTAGGGGAGTCCTTCGTCTCTGGCCGACGGCCTCG
CTGCCCACGCGTCCGATGAGAACACCGCCGCCCCCGGCGCCAACCCGCCT
CCCGGAGGACCACGAAGCTCTAGCGCCGCTGCCGCATCCCTCCAACGCCG
ATACGAACAGTAGCAGCGGCGGCGGGGGCGGCGGGGGCGGCGGAAACAGA
AACCCCGAGCTACCGCACGCGGCAGCGGCGGTGGCCGGGGCCGAGCAGGA
AAACCGAGACCCGTCTGACCCTTTCTCGCGATGGACGGCGATGGACGCCA
AGGGTAGTAAGGGCGCCGGCGTAGTAAGAGTTGGTGGTAGCGATGGGGGC
GGGGAAGAAGAGCCGACTGCGAGAGGAGAGCCGCCCCTTCCCAAGGCGCG
CCCGGCCGCCCCGCGGCGCGTCAGCTTCGCGCCGGCGGATCAGGTGCGTG
AGCACGTATGTTCCGGACCGTTCTTTGGCCCGATTGGGGTCCCACCCGTG
GTACTGTAGGGCGTGTCGTCTTTTTTCAACATATTGTTTTGGCTGCTCGG
CCCAATGCCTGTCGCGCCGGATCGTACCCTGTGGCTGTCTTTCGAATGCC
GTGCGTGGCGCGGTGTCTAGTTGTGCCGGTTGAGCGAGAGAACGTTTGTG
TCACATGATCACTTTTTCCAGTCTTGTGCACCAGACAGACGCCATCATAC
TCCGCCTTGTCTGGCGGAAACTAAATAATTGTGGTTGGCCATGCTCCCTT
CCTCGACTACTACTACATCGTCGACACCGTAATGCCCCGACTTGGTGGCC
TCGTAAAGTTGTTGCTGTTGTTGTATTCGCATGAGAAACCGTTCCGATCT
CACATTTACAACCGTTCCGATCTCTACCCAGTACGTTCATCTGTCCGTAC
TAGTCAACACTTGACGCGGTCGATTCCCGTGGTCACAGGCTAACTTACCC
TAAAAAGGTACTAAAATATATGTTGACCCGAAGGGTCCGCATGTCAAAAG
AAATCAACGAAAAAAGGGGACCTTCCTTGTTCCTCCGCCAAAGCGAAATC
GATCAACATGCTCCGTATTCTCCGCCCGCCGCAGGTCTACAAGCTCGAGG
ACCCATACTACGGCAGCAGCAGCAGCACCAACAACCACCAGCAGCGGGGC
GACTGGGAGGAGGATAACGACGGCGACAGCAAGGAAGAGGACTACGACGA
GCTCGAAGCCCCCCGCCCGCCGCCCCCTGCCCCAACGCCGATGCGGGTTT
CCGGCGCCACCGGGCCGCCACGGCGGCGCCTGAGGCAGACGTGGGGCACC
TCTGCATCGTCTCCGCGGGGGTCTAGTAGTAGAACCAGACGAGGGTGTTC
GATGGACGCTTCGGATGATGAGGTCTTCGTTGCGCCGTCGAGGATGAAGG
AGCCGTCCTTGTGGTCGACTGCGGCGGAGCAGGCTGAGCTGGAGCGGCGG
ATGGCGGAGGCGAGTACATGTCGACACGACGTTTGCGGCTGTTTGTTCAT
GGCGCCTTTTTTTTTGTTGAAGTGCGCGGTCGCGCGTCTATCTACATTGT
CACACACACGGCTCTGCTACACCGCCGACCATAGAATTTGTCCCGCTGTA
CTGCGGACTTGCACTAACCGCAAGCTGAGCGCCGTGTGTCAACACGCTGC
ACGTCGGTGCAGACATCGCTTGACAATCACACGTTGGCGTCGCGTGTTGT
ACGCCGCTGTACACACCCATACGGCTTTCGATGTGTAGCGCACGCACGTA
CCACGCGACAAGTTGCACATTTTTGGCTATCGCACCGCTGCTGTGTCGCG
CTGCAATCCCGATCACGCTGGTAGCGTCACATTTTTCAGACTTGTGCATT
CTCCCTCCTATTTCGCGACGATCGTCATACAATCATGTCGTGTTTCTTCT
GCTGCAAGCAGGAGTTCGACGGCCGCGCGGTGCCGGAGCCGGCCGCACCG
GCGTACCGGGCGGCGGCGGCGGCGGCAGTCAATATCCACCCCTTGGCCAA
GACCTTCGAGGGGCTGGTGCCTGTGTCGCTGGACGCGCCGCCACCAAGAC
CGGTGCGGAAGGGCAAGCAGGTGAGATCTGAAGAGAAGAGAATCAACACG
GCTGCGGGGCGAAGGTTGTCTTTCGTTTTGCCCTGTCCTCGGTCCCTTCC
CTGGGCCCTGCGTGCGTGCGGTTTGAATTGTCGCGGCATCAAGCCCCACG
CGCAAGGGCGAACGGGTGAAAAAATGGGGCAGCGAACGCGATGGTTGTCT
TTGGTTTGGTCCGCTCTCCCGGTGAGTATGCCCCCCCCCCCCCCCCCCTT
GTCTTGCGTGCGTGCTGTGTTAATTTCGCGGGACCGCATGCTGCCCCTAG
ACAAGCAATGGTGTCCCCATGGTTTGTTTAATGCACGATGAAGACTTGCA
TGCACGAATAGATACCTAGGCACAGACAGTTTCATGAAAACTGACTGATT
TTTTTCCTTTGTGCCGGGCCATGATGCCCCGCGTTTTTCTCCCCCCTCCT
CGATGGTTCCCCCGCATGGCTGTCAGGTGAGCAAGAGCCACCTGTCCAAA
GTGCAGGAACAGCGCATCACGGAGGAAGACCTCGCGTTCGACGGGATGGA
GCCAGACTGCAGTGCCATCATGGGCTTTGGCAGCACCGCCGGTCGCATGG
TAAGCCTTCCGCGTCGGCTGCTGGCGGTGTCGGCGTTAGATGTAGGAACA
CACATCGTTGTGCCTTGTGTTTTTATTGGAGGAGGATGTCAAACGTGTGC
TGCGAGACTTGGTGATGCGTGCAGGTTGGCGATGGCGTATGATGAGTCTT
GCCGGGGAGGGACGGCCATGCTCCCAGCAACAGTTGACGAAACCGCTGAA
CTACCATACACCTACCTGCCTGGTGGACACGTGCAAAATGACTTCACTCA
TGGCATGAGACGCCTACTAGATAGTGTTTGAGTCGCGTCCGGGTTTAGTC
ATTCGGTTAACAATGTCGTTCGTTTCCGCATCACCTGTTGCGCGCAGTGG
CCACACGAGGAGTTGGAGTGGTACGGAGGTCGAAAAATGTTCGCCGAGCT
GGACCGTTCTTCCACGGCGTCGGATCGAGTGTGGTCTCTGGGACGAAGGT
TGTAGAATACACCACGTAAAACAAGCCCCTTCCTTGTTCCATATATCAGC
TGTGGCGGTAGGAGGTGCCTTGGGTGTGTTGGGACGGAACGTTCCACTTC
TATTTCGGATTTTCCGCTTTACAACCGCAGCCAGAAACGCGACTTTCATC
TTGAAGTTGTGGCGATATGATGGCCACTTTTTTGCTTTTGTGCCTCGGGT
GTGTTGGGACGGAACGTTTCATTTTCTGTTTTGGATTTGCTGCTTGTACA
CCCGCAGCCACAAACGCCATGTTGCTGCTTTGGTACTCCTTCTGAGTTCT
GTCGCGGTGGCCGCTTGCCTTCGCCTCCCTTCACGCGATTTCTACATAGA
ACCGTGGATTGTAAAGATTCGTACTACGTATGTTCGTGTTTCAAGTAGCT
AGCCCTTTGACAGACACAACGTTCCGTGGGACAGCGGTACACCGCGCGAC
AGCCTTTGGTTTTCTGCGCCTTTCGTGGTCGAGTTCCGTTTTCTTATGCA
CCGAATGGGGGTGTGTTTTTTTTGTGTCCACCGTGCCGCCTTGGAAGCAA
GGTTGAGATTCATCTATCTTCGTAAATGAAGCACTGCCACATATAGTGTC
GCTGTGATGTTATTTTTTTTCCCTTTTCTTGGGCTTGCTGTGCACATCAG
CTTGTCGTCTAAGTAAACATCTTGGATAAAGCATGCCATCGGGGAAGTTG
GGTTAGGGTTTTAGGGGTAGGGAATAGGGTCTGCGTCCCCCGTCCTTGTT
CTATTCTCCTCGAAAGCTCATTTGTGGCACGAAGGCGGTCCGCTGTGCGA
GTTTTCGCATGGCACAACTGCT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig6868:3937..8108- >mRNA_E_fasciculatus_S2_contig6868.14999.1 ID=mRNA_E_fasciculatus_S2_contig6868.14999.1|Name=mRNA_E_fasciculatus_S2_contig6868.14999.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1173bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6868:3937..8108- (Ectocarpus fasciculatus EfasUO2) ATGAGAACACCGCCGCCCCCGGCGCCAACCCGCCTCCCGGAGGACCACGA AGCTCTAGCGCCGCTGCCGCATCCCTCCAACGCCGATACGAACAGTAGCA GCGGCGGCGGGGGCGGCGGGGGCGGCGGAAACAGAAACCCCGAGCTACCG CACGCGGCAGCGGCGGTGGCCGGGGCCGAGCAGGAAAACCGAGACCCGTC TGACCCTTTCTCGCGATGGACGGCGATGGACGCCAAGGGTAGTAAGGGCG CCGGCGTAGTAAGAGTTGGTGGTAGCGATGGGGGCGGGGAAGAAGAGCCG ACTGCGAGAGGAGAGCCGCCCCTTCCCAAGGCGCGCCCGGCCGCCCCGCG GCGCGTCAGCTTCGCGCCGGCGGATCAGGTCTACAAGCTCGAGGACCCAT ACTACGGCAGCAGCAGCAGCACCAACAACCACCAGCAGCGGGGCGACTGG GAGGAGGATAACGACGGCGACAGCAAGGAAGAGGACTACGACGAGCTCGA AGCCCCCCGCCCGCCGCCCCCTGCCCCAACGCCGATGCGGGTTTCCGGCG CCACCGGGCCGCCACGGCGGCGCCTGAGGCAGACGTGGGGCACCTCTGCA TCGTCTCCGCGGGGGTCTAGTAGTAGAACCAGACGAGGGTGTTCGATGGA CGCTTCGGATGATGAGGTCTTCGTTGCGCCGTCGAGGATGAAGGAGCCGT CCTTGTGGTCGACTGCGGCGGAGCAGGCTGAGCTGGAGCGGCGGATGGCG GAGGCGAGTACATGTCGACACGACGAGTTCGACGGCCGCGCGGTGCCGGA GCCGGCCGCACCGGCGTACCGGGCGGCGGCGGCGGCGGCAGTCAATATCC ACCCCTTGGCCAAGACCTTCGAGGGGCTGGTGCCTGTGTCGCTGGACGCG CCGCCACCAAGACCGGTGCGGAAGGGCAAGCAGCAAGAGCCACCTGTCCA AAGTGCAGGAACAGCGCATCACGGAGGAAGACCTCGCGTTCGACGGGATG GAGCCAGACTGCAGTGCCATCATGGGCTTTGGCAGCACCGCCGGTCGCAT GTGGCCACACGAGGAGTTGGAGTGGTACGGAGGTCGAAAAATGTTCGCCG AGCTGGACCGTTCTTCCACGGCGTCGGATCGAGTGTGGTCTCTGGGACGA AGGTTGTAGAATACACCACGTAA back to top
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