mRNA_E_fasciculatus_S2_contig6860.14996.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2/ERF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT6_ECTSI) HSP 1 Score: 474 bits (1219), Expect = 8.820e-161 Identity = 327/409 (79.95%), Postives = 336/409 (82.15%), Query Frame = 1
Query: 460 MGAVNLELKRSEPAAPNTTPATAXXXXXTTNASDTAQHRSTVAASLAPSSSPSPMVRGCGASERGPRGAPSPHGSSSGGGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAGAVSLPGFSMTKDVAAPSDKAATVESSQXXXXXXXXXXXXXXXXXXXXXXXGPPRMRMIDFVRMPESTPPPPVAXXXXXXXXXXXXXXXXXXARPTARDIYAGAAVPTAPATASXXXXXXXXXXPSADLAHTAAPAAPKTGAAPPEAKTXXXXXXXXXXXXSKTARPKAXXXXXXXXXXXXXXXXXXXKK-RKKDWWVRRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHCPGSQLNNPDQIERELYELSAADGKPFATAGAEPPP 1683
MGAVNLELK+SEPAAPNTT A A T+ASDTAQHRSTVAAS+AP SSPS MVRGCGASERGPRGAP P GS + GGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAGAVSLPGFSMTK+VAAP+D A TVE+SQ XXXXXXXXXXXXXXX GPPRMRMIDFVRMPESTP PPV XXXXXXXXX A PTARDIYAGAAV T PA AS PS DLAHTAAPAA KTGAAPP XXXXXXXXXXXX XXXXXX XXXXXX RKKDWWVRRGPPGQS+FKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAAR+HCPGSQLNNPDQIERELYELSAADGKPFATAGAEPPP
Sbjct: 1 MGAVNLELKKSEPAAPNTTAAVA------TSASDTAQHRSTVAASVAPYSSPSAMVRGCGASERGPRGAPPPDGSCA-GGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAGAVSLPGFSMTKNVAAPTDNAVTVEASQEPXXXXXXXXXXXXXXXT-----GPPRMRMIDFVRMPESTPSPPVVXXXXXXXXXLRPPSP---AGPTARDIYAGAAVQTVPAAASAAVTATNAS-PSPDLAHTAAPAASKTGAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAKAPKXXXXXXXXXRKKDWWVRRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVHCPGSQLNNPDQIERELYELSAADGKPFATAGAEPPP 393
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2 (protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY97_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 3.370e-159 Identity = 385/526 (73.19%), Postives = 402/526 (76.43%), Query Frame = 1
Query: 157 MSGAAPPVMTGNAWDGPRPEVSRSGNTVESRASSPPTFPPPAA-AAPGATSRVSSSGHNAATEVAQPXXXXXXXXXXXXXRGGVGAQHASPQDPEASGWDVLMGAVNLELKRSEPAAPNTTPATAXXXXXTTNASDTAQHRSTVAASLAPSSS---PSPMVRGCGASERGPRGAPSPHGSSSGGGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAGAVSLPGFSMTKDVAAPSDKAATVESSQXXXXXXXXXXXXXXXXXXXXXXXGPPRMRMIDFVRMPESTPPPPVAXXXXXXXXXXXXXXXXXX----ARPTARDIYAGAAVPTAPATASXXXXXXXXXXPSADLAHTAAPAAPKTGAAPPEAKTXXXXXXXXXXXXSKT---------ARPKAXXXXXXXXXXXXXXXXXXXKKRKKDWWVRRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHCPGSQLNNPDQIERELYELSAADGKPFATAGAEPPP 1683
MSGAAPP MTGN DGPRPEVSR+ VESR SSPP FPPP AAPGATSRV+SS H+ A + AQ XXXXXXXXXXXXX VGA HASPQDPEASGWDVLMGAVNLELKRSEPAAPNTTP XXXXX PS MVRGCG ERGPRGA P G + GGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAG+VSLPGFSMTK+VAAP+ A V+++Q XXXXXXXXXXXXXXXXXXX +RMIDFVRMPEST XXXXXXXXXXXXXXXX A PTARDIYAGAA+PT PA ASXXXXXXXX PS DLAH AAPAA KTGAA XXXXXXXXXXXX R KA XXXXXXXXX KDWWVRRGPPGQS+FKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAAR++CPGSQLNNPDQIEREL+ELSAADGKPFATAGAEPPP
Sbjct: 1 MSGAAPPAMTGNPRDGPRPEVSRN---VESRPSSPPAFPPPPLPAAPGATSRVASSEHDVAAKAAQSXXXXXXXXXXXXXXXXVGAPHASPQDPEASGWDVLMGAVNLELKRSEPAAPNTTPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAMVRGCGVFERGPRGASPPDGPCA-GGRTDAYFGNRDIVAACRALRTLPHVPVDDAPGSGSAPVAVGAGSVSLPGFSMTKNVAAPTVNAVMVKANQEPXXXXXXXXXXXXXXXXXXX------IRMIDFVRMPESTXXXXXXXXXXXXXXXXXXXXXXLQPPSPAGPTARDIYAGAAMPTVPAAASXXXXXXXXT-PSPDLAHAAAPAASKTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTKAKAHKVRKAPXXXXXXXXX-----KDWWVRRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVYCPGSQLNNPDQIERELHELSAADGKPFATAGAEPPP 510
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2 (protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.430e-29 Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIH-CPGSQLNNPDQIERELYELSAADGKPFATAGA 1671
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA H G++LN PD IER+L ++S+ G+PFATAGA
Sbjct: 399 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSVSGRPFATAGA 485
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: Pathogenesis-related (transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 118 bits (296), Expect = 5.240e-25 Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIH-CPGSQLNNPDQIERELYELSAAD 1644
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA H G++LN PD IER+L ++S+AD
Sbjct: 341 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSAD 418
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2/ERF (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.020e-15 Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHC-PGSQLN 1596
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGV+DSE AARAY+ +A H G++LN
Sbjct: 231 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 84.7 bits (208), Expect = 1.310e-14 Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYD-AAARIHCPGSQLNNPD 1605
RRGP GQS FKGVC+T AG WR+VIYV RKQ YLGVF++E +AA+AYD +A + G+ LN PD
Sbjct: 143 RRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPD 207
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 84.7 bits (208), Expect = 1.620e-14 Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYD-AAARIHCPGSQLNNPD 1605
RRGP GQS FKGVC+T AG WR+VIYV RKQ YLGVF++E +AA+AYD +A + G+ LN PD
Sbjct: 156 RRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPD 220
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2/ERF (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 5.370e-13 Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHCPGSQLNN 1599
RRG G+S ++GVC+T G WRAVIY +RKQ YLGVF+SE DAA+A+D AAR H + N
Sbjct: 22 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVN 83
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2/ERF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 2.340e-12 Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHCPGSQLNN------PDQIERELYELSAADGK 1650
RRG G+S ++GVC+T G WRAVIY +RKQ YLGV++SE +AA+A+D AAR H P + N D++ E E G+
Sbjct: 134 RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQEECGDGGGE 218
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Match: AP2 (protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.950e-12 Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 1414 RRGPPGQSNFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARIHCPGSQLNN------PDQIERELYELSAADGK 1650
RRG G+S ++GVC+T G WRAVIY +RKQ YLGV++SE +AA+A+D AAR H P + N D++ E E G+
Sbjct: 121 RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQEECGDGGGE 205 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6860.14996.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6860.14996.1 >prot_E_fasciculatus_S2_contig6860.14996.1 ID=prot_E_fasciculatus_S2_contig6860.14996.1|Name=mRNA_E_fasciculatus_S2_contig6860.14996.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=526bp MSGAAPPVMTGNAWDGPRPEVSRSGNTVESRASSPPTFPPPAAAAPGATSback to top mRNA from alignment at E_fasciculatus_S2_contig6860:1822..4951+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig6860.14996.1 ID=mRNA_E_fasciculatus_S2_contig6860.14996.1|Name=mRNA_E_fasciculatus_S2_contig6860.14996.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3130bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6860:1822..4951+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6860:1822..4951+ >mRNA_E_fasciculatus_S2_contig6860.14996.1 ID=mRNA_E_fasciculatus_S2_contig6860.14996.1|Name=mRNA_E_fasciculatus_S2_contig6860.14996.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1578bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6860:1822..4951+ (Ectocarpus fasciculatus EfasUO2)back to top |