mRNA_E_fasciculatus_S2_contig6855.14986.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6855.14986.1
Unique NamemRNA_E_fasciculatus_S2_contig6855.14986.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 1088 bits (2815), Expect = 0.000e+0
Identity = 539/546 (98.72%), Postives = 543/546 (99.45%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +VLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKG+QHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQA PRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDA  +CRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+R
Sbjct:  286 KVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLR 831
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BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 863 bits (2230), Expect = 5.430e-303
Identity = 422/548 (77.01%), Postives = 470/548 (85.77%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL--HDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +VLIA ERMS NHVYCF+K+QPSKF W  E RS V+   RP S+M+LQMY KG +HS++ GG IR  LPY+RTDVP+VL+FRALG+ NDK ILEHIVYDFSD +MMEKFRPSLEEADVIQ++ +A DFIGKRGSA NVGRNERI YAKGLLQ+E LPHVG    +E KK FFLGY+VHKLLMCSLGRLEEDDRDHYGKKRLDLAG L+AGLFR              Q CLD+G  FV+G AIKS  IT+GL+YSLATGNWGD+KTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQA PRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVGC+LSPILEFLEEWA ENL+EI+P  IA+  CTK+FVNGNW+G+HR+PN+LV+TLV QRR LDID EVSVVRDIK RELRLYTDA  +CRPLFVV+NN+L IRK HI+DL  +   Y WT+LMQ GVVEY+DTEEEETTM+AM+P DL   GGYS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YASNYQVR
Sbjct:  197 KVLIAQERMSNNHVYCFRKKQPSKFHWVCETRSHVEGGTRPTSTMYLQMYVKGPKHSQIAGGQIRTTLPYVRTDVPIVLIFRALGFVNDKTILEHIVYDFSDAEMMEKFRPSLEEADVIQSRTLALDFIGKRGSAANVGRNERIQYAKGLLQKEVLPHVGTDEASETKKGFFLGYVVHKLLMCSLGRLEEDDRDHYGKKRLDLAGPLVAGLFRTXXXXXXXXXXXXXQKCLDEGRGFVLGVAIKSNTITNGLRYSLATGNWGDQKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGCALSPILEFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDAEVSVVRDIKERELRLYTDAGRICRPLFVVQNNKLVIRKSHIHDLVSNPEEYNWTSLMQAGVVEYVDTEEEETTMIAMDPSDLAAGGGYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYASNYQVR 744
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BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 775 bits (2002), Expect = 3.670e-269
Identity = 378/549 (68.85%), Postives = 450/549 (81.97%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVEN---NRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V++A ERMS NHVYCF+K+QP K++W  E RS V++  RP S++++QMY K  +  +  G  IR  LPYIR DVPV++VFRALG+  D+ ILEH+VYDFSDT+MME+ RPSL+EA V+QNQ +A DFIG+RGSA N+GR++R+ YAK LLQ+E LPHVG    ++ KK FF+GY+VHKLLMCSL R++EDDRDHYGKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D+G  F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQA PRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDA  +CRPL ++       LR+RK HI  L +   GWT L+ +G+VE +DTEEEETTM+AM P DL E+  YSSTYTHCEIHPSMILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIYASN+Q R
Sbjct:  145 KVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGR-GQSQGNQIRMTLPYIRVDVPVIIVFRALGFVADRDILEHVVYDFSDTEMMEQLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKLVNGELGWTQLLVKGLVELVDTEEEETTMIAMVPSDLNET--YSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQR 690
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BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZKU8_9STRA)

HSP 1 Score: 756 bits (1953), Expect = 8.230e-266
Identity = 375/549 (68.31%), Postives = 445/549 (81.06%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHD---PNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +VLIA ERMS NHVYCFKK   SK++W  E RS V+   RP S+M++QMYAK    S V+G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDF+D ++ME+F+PSLEEA VIQ Q VA DFIG+RGSAVNV + +R+ YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGRL EDDRDHYG KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D G  F +  AIKS+ I++GL+YSLATGNWG +KTA+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQA PRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I     TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDA  +CRPLF+VENNRL ++K+H+  L +     + W NL+ +GVVE IDTEEEE  M+AMEPKDL  +    S YTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SN++ R
Sbjct:  148 KVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTQFRWQNLLTEGVVELIDTEEEEVCMIAMEPKDLRNA---RSLYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNFRAR 691
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 769 bits (1985), Expect = 1.790e-265
Identity = 378/560 (67.50%), Postives = 449/560 (80.18%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVEN--------------NRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V++A ERMS NHVYCF+K+QP K++W  E RS V++  RP S++++QMY K  +  +  G  IR  LPY+R DVPV++VFRALG+  D+ ILEH+VYDFSDT+MME+ RPSL+EA VIQNQ +A DFIG+RGSA N+GR++R+ YAK LLQ+E LPHVG    ++ KK FF+GY+VHKLLMCSL R++EDDRDHYGKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D G  F + +AIKS+ +TDGL+YSLATGNWGD+K A++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQA PRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDA  +CRPL +VE                 LR+RK H+  L + + GWT L+ +G+VE IDTEEEET M+AM P DL E   YSSTYTHCEIHPSMILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIYASN+Q R
Sbjct:  242 KVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGR-GQSQGNQIRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEAFVIQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLLVKGLVELIDTEEEETAMIAMIPSDLNEP--YSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQR 798
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFE0_9STRA)

HSP 1 Score: 756 bits (1952), Expect = 8.010e-265
Identity = 374/551 (67.88%), Postives = 442/551 (80.22%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHD-----PNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V++A ERMS NHVY FKK+QPSKF+W  E RS V+NS RP S++++QMY KG + + + G  IR+ LPYIRTD+PVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEE+ VIQ Q VA DFIG+RGSA +V +++RI YA G+LQ+E LPHVG     E KK FFLGY VHKLLMC LGR +EDDRDH+GKKRLDLAG LL GLFR LFRKLT++VRK+L+LCLD+   F +G AIKS  I+DGLKYSLATGNWGDK  + KAGVSQVLNRLTYAS LSHLRR NTPL R GKQA PRQLHN+HWG +CPAETPEGQAVGLVKNLALMAYI+ G +  PI+EFLEE++ ENL +I P +IA+    K+FVNGNWVGVHRDP  LV+T    RR +DID EVS+VRDI   E+R+YTDA  +CRPLFVV +  L I+K HI+ L           W +L+ +G+VEYIDTEEEETTM+AMEPKDLE    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SNYQVR
Sbjct:  161 KVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYHKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEESFVIQRQEVALDFIGRRGSARDVTKDDRIRYASGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCRLGRSDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLKLCLDQVKMFNIGAAIKSNHISDGLKYSLATGNWGDKGASVKAGVSQVLNRLTYASTLSHLRRCNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLALMAYITTGTAQVPIMEFLEEFSTENLTDILPSVIAEPTTCKIFVNGNWVGVHRDPKALVETFRSLRRMIDIDAEVSIVRDIAESEVRIYTDAGRICRPLFVVTDQDLVIKKHHISQLQGISDDGKRLTWADLLMEGLVEYIDTEEEETTMIAMEPKDLESGDSYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNYQVR 710
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 767 bits (1980), Expect = 1.400e-264
Identity = 376/564 (66.67%), Postives = 451/564 (79.96%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENN------------------RLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V++A ERMS NHVYCF+K+QP K++W  E RS V++  RP S++++QMY K  +  +  G  IR  LPY+R D+PV++VFRALG+  D+ ILEH+VYDFSDTDMME+ RPSL+EA V+QNQ +A DFIG+RGSA N+GR++R+ YAK LLQ+E LPHVG    ++ KK FF+GY+VHKLLMCSL R++EDDRDHYGKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D+   F + +AIKS+ ITDGL+YSLATGNWGD+K A++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQA PRQLHNTHWGFICPAETPEGQAVGLVKNLALMAY+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+W+GVHRDP  L  TL   RR +DID EVSVVRDIK +ELR+YTDA  +CRPL +VE++                  +L++RK HI+ L +   GWT L+ +G+VE +DTEEEE TM+AM P DL E   YSSTYTHCEIHPSMILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIYASN+Q R
Sbjct:  241 KVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTVYMQMYNKAGR-GQSQGNQIRMTLPYVRVDIPVIIVFRALGFVADRDILEHVVYDFSDTDMMERLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWIGVHRDPCTLEATLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVESDHASTWKDPLNHSSSSPAQKLKLRKPHIHKLVNGELGWTQLLVKGLVELVDTEEEEATMIAMIPSDLNEP--YSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQR 801
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 761 bits (1964), Expect = 8.660e-263
Identity = 374/553 (67.63%), Postives = 447/553 (80.83%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLH-----DPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGG--YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V++A ERMS NHVY FKK+QPSKF+W  E RS V+NS RP S++++QMY KG + + + G  IR+ LPYIRTD+PVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEEA VIQ Q VA DFIG+RGSA +V +++RI YA G+LQ+E LPHVG     E KK FFLGY VHKLLMC LGR +EDDRDH+GKKRLDLAG LL GLFR LFRKLT++VRK+LQ CLD+G  F +G AIKS  I+DGLKYSLATGNWGDK   +KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQA PRQLHN+HWG +CPAETPEGQAVGLVKN+ALMAYI+ G S  P++EFLEE++ ENL +I P +IA+ N  K+FVNGNWVG+HRDP +LV T    RR +DID EVS+VRDI   E+R+YTDA  +CRPLF+V +  L I+K HI+ L           WT+L+ +G+VEY+DTEEEETTM+AMEPKDL+ + G  YS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR
Sbjct:  202 KVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMIDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQGVSPDQKKLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 753
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 758 bits (1957), Expect = 6.080e-262
Identity = 375/549 (68.31%), Postives = 446/549 (81.24%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHD---PNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +VLIA ERMS NHVYCFKK   SK++W  E RS V+   RP S+M++QMYAK    S V+G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDF+D ++ME+F+PSLEEA VIQ Q VA DFIG+RGSAVNV + +R+ YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGRL EDDRDHYG KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D G  F +  AIKS+ I++GL+YSLATGNWG +KTA+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQA PRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I     TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDA  +CRPLF+VENNRL ++K+H+  L +    ++ W NL+ +GVVE IDTEEEE  M+AMEPKDL  +    S YTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SN++ R
Sbjct:  190 KVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTHFRWQNLLTEGVVELIDTEEEEVCMIAMEPKDLRNA---RSLYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNFRAR 733
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7ERG7_9STRA)

HSP 1 Score: 758 bits (1958), Expect = 6.530e-262
Identity = 375/551 (68.06%), Postives = 444/551 (80.58%), Query Frame = 1 
Query:    1 QVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDK-KTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLH----DPNYGWTNLMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 1635
            +V+IA ER+S NHVY F+K+QPSKF+W  E RS V+NS RP S++++QMY KG + + + G  IR+ LPYIRTDVPVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEEA VIQ Q VA DFIG+RGSA +V +++RI YA  +LQ+E LPHVG+    E KK FF+GY VHKLL C LGR EEDDRDH+GKKRLDLAG LL GLFR LFRKLT +VR++LQ CLD+G  F +G AIKS  +TDGLKYSLATGNWGDK  +A KAGVSQVLNRLTYAS+LSHLRR NTPL R GKQA PRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYI+ G +  P++EFLEE++ ENL +I P ++A+ N  K+FVNGNWVGVHRDP  LV T    RR +DID EVS+VRDI  +E+R+YTDA  +CRPLFVV+  +L I+K+HI  L     +    WT+L+ +G+VEYIDTEEEETTMVAM+P DL     YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR
Sbjct:  202 KVIIAQERLSNNHVYAFRKKQPSKFSWVIETRSQVENSSRPVSTLYIQMYQKGGRGA-IEGNQIRSTLPYIRTDVPVVVIFRALGYVADRDIIEHVVYDLTDGEMMDMFRPSLEEAFVIQRQEVALDFIGRRGSARDVTKDDRIRYASAILQKEVLPHVGVEEHCETKKGFFIGYAVHKLLSCKLGRAEEDDRDHFGKKRLDLAGPLLGGLFRLLFRKLTLDVRRHLQRCLDEGKHFNIGAAIKSNHVTDGLKYSLATGNWGDKGASAPKAGVSQVLNRLTYASSLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYITTGTAQVPVMEFLEEFSTENLTDILPSVVAEPNTCKIFVNGNWVGVHRDPRALVDTFRSLRRMVDIDAEVSIVRDIAAKEVRIYTDAGRICRPLFVVQEQQLVIKKQHIMQLQGLSGEKKLTWTDLLMEGIVEYIDTEEEETTMVAMDPVDLNADESYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR 751
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6855.14986.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA-directed0.000e+098.72RNA polymerase subunit beta n=1 Tax=Ectocarpus sil... [more]
DNA-directed5.430e-30377.01RNA polymerase subunit beta n=1 Tax=Tribonema minu... [more]
DNA-directed3.670e-26968.85RNA polymerase subunit beta n=1 Tax=Aureococcus an... [more]
DNA-directed8.230e-26668.31RNA polymerase (Fragment) n=3 Tax=Aphanomyces asta... [more]
DNA-directed1.790e-26567.50RNA polymerase subunit beta n=1 Tax=Aureococcus an... [more]
DNA-directed8.010e-26567.88RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=... [more]
DNA-directed1.400e-26466.67RNA polymerase subunit beta n=1 Tax=Pelagomonas ca... [more]
DNA-directed8.660e-26367.63RNA polymerase subunit beta n=2 Tax=Bacillariophyt... [more]
DNA-directed6.080e-26268.31RNA polymerase subunit beta n=17 Tax=Saprolegniace... [more]
DNA-directed6.530e-26268.06RNA polymerase subunit beta n=6 Tax=Bacillariophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6855contigE_fasciculatus_S2_contig6855:124..7160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1080.5
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
Model size1635
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
Exons11
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
Ec32 ortholog descriptionRNA polymerase Rpb2, domain 5
Ec32 orthologEc-12_006450.1
EC2.7.7.6
Cds size1611
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6855.14986.1prot_E_fasciculatus_S2_contig6855.14986.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6855 148..7160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.783252-UTR-E_fasciculatus_S2_contig6855:123..1471696842342.783252-UTR-E_fasciculatus_S2_contig6855:123..147Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6855 124..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.7963173-CDS-E_fasciculatus_S2_contig6855:147..2791696842342.7963173-CDS-E_fasciculatus_S2_contig6855:147..279Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 148..279 +
1696842342.8068151-CDS-E_fasciculatus_S2_contig6855:661..8341696842342.8068151-CDS-E_fasciculatus_S2_contig6855:661..834Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 662..834 +
1696842342.8177783-CDS-E_fasciculatus_S2_contig6855:1293..13751696842342.8177783-CDS-E_fasciculatus_S2_contig6855:1293..1375Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 1294..1375 +
1696842342.8298354-CDS-E_fasciculatus_S2_contig6855:2252..23481696842342.8298354-CDS-E_fasciculatus_S2_contig6855:2252..2348Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 2253..2348 +
1696842342.8399255-CDS-E_fasciculatus_S2_contig6855:2857..29391696842342.8399255-CDS-E_fasciculatus_S2_contig6855:2857..2939Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 2858..2939 +
1696842342.8520517-CDS-E_fasciculatus_S2_contig6855:3465..36141696842342.8520517-CDS-E_fasciculatus_S2_contig6855:3465..3614Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 3466..3614 +
1696842342.867573-CDS-E_fasciculatus_S2_contig6855:3861..40301696842342.867573-CDS-E_fasciculatus_S2_contig6855:3861..4030Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 3862..4030 +
1696842342.8789532-CDS-E_fasciculatus_S2_contig6855:4727..48641696842342.8789532-CDS-E_fasciculatus_S2_contig6855:4727..4864Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 4728..4864 +
1696842342.8935869-CDS-E_fasciculatus_S2_contig6855:5484..57191696842342.8935869-CDS-E_fasciculatus_S2_contig6855:5484..5719Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 5485..5719 +
1696842342.9030213-CDS-E_fasciculatus_S2_contig6855:6335..64421696842342.9030213-CDS-E_fasciculatus_S2_contig6855:6335..6442Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 6336..6442 +
1696842342.912549-CDS-E_fasciculatus_S2_contig6855:6911..71601696842342.912549-CDS-E_fasciculatus_S2_contig6855:6911..7160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6855 6912..7160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6855.14986.1

>prot_E_fasciculatus_S2_contig6855.14986.1 ID=prot_E_fasciculatus_S2_contig6855.14986.1|Name=mRNA_E_fasciculatus_S2_contig6855.14986.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=537bp
MSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGSQHSK
VNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEK
FRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPH
VGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALL
AGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLAT
GNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQATPRQLH
NTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMEN
LDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEV
SVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHDPNYGWTN
LMQQGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGV
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVR
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mRNA from alignment at E_fasciculatus_S2_contig6855:124..7160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6855.14986.1 ID=mRNA_E_fasciculatus_S2_contig6855.14986.1|Name=mRNA_E_fasciculatus_S2_contig6855.14986.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7037bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6855:124..7160+ (Ectocarpus fasciculatus EfasUO2)
CAGGTGCTGATCGCGAACGAGCGCATGAGCACGAACCACGTGTACTGCTT
CAAGAAGCGACAACCGAGCAAGTTTACCTGGACCTCGGAGATCAGGAGTT
TCGTCGACAACAGCGGCAGGCCTCCGTCCTCTATGTTCCTGCAGATGTAT
GCCAAGGTGCGTCCGTGGTGTTGGTGGCAGGCGTGTTGCGGCCAGGCGCG
TTGTGGGCAGGCGTGTTGTGAGCAGGGGTGTTGTGAAAACGGCGGTGTTT
TTTTGTTTGTTTGTTCGCCCGTGGGCATTTTGTGTGTTTGTGGAACGGTC
GTGCTTGACCGAGGATTTACCCCCCCCGGAGAGAGTGTGTGTGTCGTTGT
TGGCATCGACCGCGCTAACTGGCTGACCACTGAAAATACGTCAACGTATA
GCCTTTGAGTCATGTTCCCTGCGCATGCTTCTCGTCTGTCGTTCGACCCC
CCTCCACGCGCTCCGATCCTCTTCCTCTCTCGCCGTATTCTGAAACCCTG
CTTTTTTTTGCTACATGTGCGTTTGAACATTTGAACAGGGGTCTCAGCAC
AGCAAAGTGAACGGAGGGCACATCCGTGCGCAGCTGCCGTACATCAGGAC
GGATGTGCCAGTGGTGCTGGTGTTCCGAGCGCTCGGTTACACGAACGACA
AGGCTATCCTGGAGCACATCGTCTACGACTTCTCCGACACGGACATGATG
GAAAAGTTCAGGTGAACCATTCTTTTTTGTTCTTTGTGGGTCGTCCCATC
TACGCGCCAGTCTACCTTACGATTTCTTTTTTTGTGTGTTTGGTGTGTGT
GATGTGCAATTGGGCCGCCTTGGTTCATGCGTGGCGGACAGATGCGTGAA
AACCATGGTACATTATATTACATTACATTATTGTACGTGTCTTTGTACAC
GGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGAC
AGACAGACAGGCAGTGAGACCACATGAGCTTGCGTGTGGTTGCACTTGAT
ATCTTCTCCATGAGATGTTTGGATGTATGAGACTGCTCTCTTTATTTTGT
CATGATTTTGATTTTCTCGTACCTTTTCCCGTCACGCATGCATACGTGTT
CCCAGGCCGTTTAATCTGTAGTGATTTGAATGTCGTACCTTTTCCCGTCG
TGTATGTGTTCTGTTCCCAGGCCATCGCTGGAGGAGGCGGACGTGATCCA
GAACCAGGTTGTGGCGCAGGACTTCATCGGGAAGCGTGGTAGCGCCGTCA
ATGTAAGACATCATGTTCTTCCTGGGGTACACCTTTGTACAGTCTGTTGT
TATTGTTGTTGTTGTTGTTGTTGTTCTTTTTTCGCCGCTGCTGGTGTCGT
TGTTGATTCCGCTTGAATAGACCCTTCACCATACTGCTGTACACAATCGT
GGCGACGCCACCAAGAGAAGGTATGTAGTTGGTCAAATAAGACATGCTCC
CGCGGCCATATGGAAGCAGCATTTACAGCAGCAGCAGCGGTAGATAGCAT
CATCATCCTTCATCAACAGCAGTGGTATCAGCAGCCACGGAGCTGCGCAC
TCTTTTAGAGCGCTACATCGGTGGAAGCATCGCTTGTGCCGCGTGGTATG
GCTGCTGTAGTCGGCCTAGGTTGGCGGGGTCATGGTCGTGCTAAATAGAC
TCGTTCGCTTGGACGCTTTTCAAGGCTATCCCTGCCATCATGTGCCTGCA
TGTATGCAAGGCATACGCGATGACAGCAAAAGTACGTGTACTAAAGTATA
TTCATTAACCGTCTGTCTGTCTTGGGTTGTTGTGGACGAATTCATTTGGG
GATCTCCCCCTGCTGCTCTACTGGCGCACCAGCCCCCCACCCTTCTCGGG
GGAAGGTTCTCACCGTGACGATTCGGAAGGGGGCGATACCACAAGAATGG
AATGCACGTGCCGTCCGTTTGCACCCAGCGTAGTTGAAGGTGTCATGACA
CCGACAGGAGCAGCAGTAGCTATCAAACGGCCGCTATCCGTGTGTGTTTG
TCGTTGACACGCCGTTCATGTTTTGTCTTGACCGACCGAAAACATCATTT
TTTTTCAACCGCCTCCTTTTGTTCCTTTGTTGGCCTGTCGCTTCTTCCAT
TTTTTTTTGCATTTTGTGTTTTTTGCAAGGTCGGGCGGAACGAGCGGATC
AACTACGCCAAGGGGCTCCTTCAGAGGGAGTTTTTGCCTCACGTCGGGAT
CGGGGCCGGTACGGAGGCAAAGAAGGTGGGAAACAGACAACAGACGACAC
CGGACACCCCCGCCCGCTCTAAAAAAACGGAGACAGACAGAAAGACAGAC
AGACAGAGACCCGCTCTAAGAAAGTACATGGCGCCTGGGTGTCGGCAAGG
TCCTAGTATAATAATACCTCCGCGCCGCACCACGTTGTTACATACAAGTT
GTTTGTTGTTGTTGTTGTTGTTGGGTGGTGGTGGTGGTGGTGGTGGTGCT
GTTGGACGAAACTCCTTGTGGTATCACTATTGGGGATGCTGTTCTTGTTG
TTTTGCTCAATCGGTGTTGTTGTTGCTGCCGCTGGTACAGCGCATCGGAC
GGACGTCCCGCGGCGGTAGTACCAGCAGCGCTCTTTGGCAGCGCTACTCT
CTCTCGACTCGTTACCACTGAGCGTTGTAGGCTGCCTGCGCTCACTCGGA
ACGCGCCCTTGGCTGCCTGCCATCTGTACCGTCCGTACCGGTGGCGACAT
TTGGTGTTGGTGATTGCTCATTTTTCTTTTCCAGGTGTTCTTCCTGGGGT
ACATGGTGCACAAGCTGCTCATGTGCAGCCTCGGTCGGTTAGAGGAGGAC
GACCGAGATCACTACGGTAAGCATCAGAAACACCTCTACCACTATTTATT
GAGATGAGATGCAATGATGAGTTTGTGAGGGACACAAAGGGGGGGGGGGA
GGGGGTCAGAGGAGACGGAGAGAGACAGACAGGCAGGCAGATAAGCGAAG
AGCCAGCTGTAGGATGTGGGACAAAAGGCCCACTCGAAGGTGTGCTACGG
GTGTGGTGTAGTGCGTGGACACCTTGTCGTGCCGTGCGTGCTGTACGGCA
TCGTTGCCCACGTTCACACCCAACCAATCCAAAGCATCTAAAGCACGCCT
TTCACGTTTGACGTCAAGGTTTGTTGCTGTTACTACCACAGTTGCTGCTG
CTGCTGCTGCTGCTGTTTGTTGCTGCTGTGCTGGTGCTTGCTTTTCGACC
CCGGGGCTGTCTTCTGAACACGCTCGGTTCCTGCCCCTATCCCTCCTTCT
CCGGACCGTTCCCCGGACCGCTCTTTTGGGGGTTGGTTCCTTCTCCTTCT
TCCCGGTGGGTGTTGTTGTGTGTTGTGTGTTGTGTGTTGCAGGCAAGAAG
AGGCTGGACCTGGCGGGAGCGCTGCTCGCCGGCCTGTTCCGGCAGCTGTT
CAGAAAGCTCACGCAGAACGTGCGCAAGTACCTGCAGCTCTGCCTGGACA
AGGGCACGCAGTTCGTCGTGGGTACGGCCATCAAGAGCCAGGTGAGGCCT
GCTATATCTAAATACTTTGCTTCGCACGTGCACGTCCGACAGTACTTGTA
GTTGGCGCTTGTTTCGTTCTTGTGCGGGCGTTTCTTTTGCCTGTTTTTTA
CCCAGTTAAAAATTCCTTTGTTTTTATCCCCACATCTCACTCACTCGTGT
TTTGTTTTTGGTGGGGGGCGACGAAACGATTTAAAAAAAAAAAAGTAACT
GAAACAATCAAATCACACCGCTTCAACGACGATAACAGTTCATCACGGAC
GGGCTCAAGTACTCCCTGGCCACGGGCAACTGGGGCGACAAGAAGACGGC
CACCAAGGCCGGGGTGAGCCAGGTGCTCAACCGACTCACCTACGCCTCGG
CCCTGTCGCACCTCCGAAGGCTCAACACCCCCCTTGGGCGAGAGGGAAAG
CAGGCGAGTTCAAAGATTTGGTCAGCGAGTCACGCTTTCGCCGTTGCTAA
ACCACGGTCCCACGTGGTTGGTATCCATCCCACACCCCAAATCACGCCAG
CTTTGTTGTTGTCGTCCCTCTTCGCGAGCGGTGTAACTAGTCAGGCTGCT
GTTTTTTGCACGATCTGGTAAGGTGCTCCTCTTTTCTATTGGACTGTTGT
TGGCGTGTGTCCATAGACCGCTTGGCGTGTGTTCGTGTGAGTAGTTGACT
TCACGGGGGTGCCTGGTTAATTAAGCGCTTACCACTCAAAGCACGTCCGA
TCGCATGCTTTCATCTTTTTCGTCATGAATCATACAACAACACCCAGCAG
CAGCACTCTTTTGTAGCGGCCTCCTATCACATACAGACGATACACCGCCC
TATGTTTGGGCTTCCCCCGCCTCCTTTTCAAACCTTGTTGTGTGTCGTTC
GTTTTGCGGGTTCTCTCCTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTTCCTCTTCCTCTCTTCCTCTGTCTCT
GTCTCTGTCTATGCTTCTTTCTCTCTCTTTGTCTGTCTCTGTCTCTGCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCTCTCTCTCTCCC
TCAGCCCCCCGACAACTCCACAACACCCACTGGGGCTTCATCTGTCCGGC
CGAGACGCCGGAGGGTCAGGCTGTGGGCCTAGTGAAGAACCTTGCACTGA
TGGCGTACATCAGTGTTGGCTGCTCGCTGTCCCCTATCCTGGTTAGTATG
TTAGCACAGGAGAGCACGACTCGTGCTTTTTTTGTGCCTTTTCGCTTCTC
GTGTCTTGTTGCGTGTTTTTTGTTGCTGGTGGTCCCGTCTCTTTTTAAAG
AAAAAATACAAGTACAAACACCGAAATGACTAGTCTCTGTGTTGTTTATT
TTTCTCTTTATTTTTGTCGCTGAGTGTGCATCAGGTCTGGGTGGGGGGGG
GGGGCATGGCTGGATTCGTGAACACCTCGAATGGCATTTTGTCCTTTGGT
AGTGGTTTTGTACATCTTCTTCCCGTGCAATGCGCACGCATTGATCTGAC
GCACATCCGCGGACGTGTGCACTCGTGCAGTATACACAACACACGTACCT
CCTACGCGCTCACATTTTTTTGTTTGCACAAGTACGCACCGAACAAGAAG
GCAAGACCTCCCACCCCGAGCTTTGACTGGTGGTAACTGGTGGAGATACC
ACGTATTGGAATCATGTAGTCCTCACAACAGGGTCCAAAACGACGCACGA
CCTTCTTTTTCTCCAACTGTCATTTTGTTTTTTGTCATTGGAAAACTGGT
ATCGCTCTTCCTTGCCGCCATGTGTGGTCCCTCCTCCTCTTGCCCTCCTG
CCCGAGAACAGGAGTTCCTGGAGGAGTGGGCCATGGAGAACCTCGACGAG
ATCGCGCCGCACATGATCGCGCAGACGAACTGCACTAAGGTGTTCGTGAA
CGGGAACTGGGTGGGCGTGCACCGCGACCCCAACCGGCTGGTGCAGACGC
TGGTGCACCAGAGACGGGCCCTCGACATCGACGTCGAGGTGTCCGTCGTC
AGGGACATCAAGGGCAGGGAGCTCCGGCTCTACACGGACGCGGCAAGTTT
ACTACCGTATGCGTATGCACATGAAGTGCAAGTCTTTCTCTGTTTTTTAG
CAAATATGCATACAAACACAGAAACTCTTACCCGTTCGAGATATAACCAC
AACAGTCGAAAGGGATGTGCTGAAGCTTTTTTTCTGTGTTTTGTATATTT
TCTGGAAAAAGTAGGTACGAAGCAGTTGGTACAGAGTAGTTGCCCGGGCC
GGTCGTGTGTGTGTCGGGTGGTGTTTTTGCTGGGGCCTGTTTTGGACGGC
GAATGAGGCACAAAGCTCTGCGCGTCTCGACGGACGGACAGACAGACAGA
CAGACAGGGGGAGCGACAACTAAAGCGCCGTCATTGAAGCATTGAAGCCC
ATTGTTGGCATCGCGTGCAATAGTCTTTCCCCAGAAAGATCCATCTATCT
GTGTTTGCCCCCCCCCCGCCGTCACTTATATTCGGTGCGCTTGTTGGTTT
GTCTCGTGGGCGACCGATCATATCCTGTCCTGTTGTTCTGCCGCCCGTCT
TGTGACGCGCGCGCTGGTGTGTTCCTCTACCCTGAACCTGCTGAACTCCG
AACGCCTCCTTTCGTTTTGTTGTCCCTCCTTTCGTTTTGTCGTCCTACTG
TACAGGGGCGAGTGTGCCGGCCGCTGTTCGTGGTGGAGAACAACCGCCTT
CGCATCCGGAAGAAGCACATCAACGACCTGCACGACCCCAACTACGGCTG
GACAAACCTCATGCAGCAGGTGCGTTGTTTTTTCTCGTGTCCCATGTATT
TGTGCGTGAGCGCGTGAGATTTTTCGGTGGTTTGCGTTCTGCTTTGTGCG
TGTTTCTTTTGGTTGCGGTTGGGATTCTTTTTCTTCTTCTTCTGTTCTTT
CAGACCGTTGGAAACACCTGGTTTTGTGTCGGCCTGCGAAATACCGAGTC
CAGTCTCCATTATTTCAAACGCAAGATTGAGATTAAATGCAACGACGCAA
ATGGCGACTGGTGAATCCAAAATCGACCAAGTGTTGAACGAGGCGGTGGA
CACATGGGCTAACCCAGGGAGAAGAAGAGGCATCGAAGGCAGAACTGGTT
GGTCGAAGTTCTCATTCCATAGGTTGGCTTTTTTTTTTTCAGTTTTGGGG
ACGAAGCATGAAGAATGAAAAAATGAACAATAAACACGAAGCATGAAGAA
TGAAAAAATGAACAATAAACGACACAAATGATGATCAGGGCGTGGTGGAG
TACATCGACACCGAGGAGGAGGAGACGACGATGGTCGCCATGGAACCCAA
GGATTTGGAAGAGTCCGGCGGGTACTCGAGCACCTACACCCACTGCGAGA
TCCACCCCAGCATGATCCTCGGCGTGTGCGCCTCCATCATCCCCTTCCCG
GACCACAACCAGTCCCCACGTAACACCTACCAGTCGGCCATGGGGAAGCA
GGCCATGGGCATCTACGCGAGTAACTACCAGGTGCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6855:124..7160+

>mRNA_E_fasciculatus_S2_contig6855.14986.1 ID=mRNA_E_fasciculatus_S2_contig6855.14986.1|Name=mRNA_E_fasciculatus_S2_contig6855.14986.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1611bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6855:124..7160+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCACGAACCACGTGTACTGCTTCAAGAAGCGACAACCGAGCAAGTT
TACCTGGACCTCGGAGATCAGGAGTTTCGTCGACAACAGCGGCAGGCCTC
CGTCCTCTATGTTCCTGCAGATGTATGCCAAGGGGTCTCAGCACAGCAAA
GTGAACGGAGGGCACATCCGTGCGCAGCTGCCGTACATCAGGACGGATGT
GCCAGTGGTGCTGGTGTTCCGAGCGCTCGGTTACACGAACGACAAGGCTA
TCCTGGAGCACATCGTCTACGACTTCTCCGACACGGACATGATGGAAAAG
TTCAGGCCATCGCTGGAGGAGGCGGACGTGATCCAGAACCAGGTTGTGGC
GCAGGACTTCATCGGGAAGCGTGGTAGCGCCGTCAATGTCGGGCGGAACG
AGCGGATCAACTACGCCAAGGGGCTCCTTCAGAGGGAGTTTTTGCCTCAC
GTCGGGATCGGGGCCGGTACGGAGGCAAAGAAGGTGTTCTTCCTGGGGTA
CATGGTGCACAAGCTGCTCATGTGCAGCCTCGGTCGGTTAGAGGAGGACG
ACCGAGATCACTACGGCAAGAAGAGGCTGGACCTGGCGGGAGCGCTGCTC
GCCGGCCTGTTCCGGCAGCTGTTCAGAAAGCTCACGCAGAACGTGCGCAA
GTACCTGCAGCTCTGCCTGGACAAGGGCACGCAGTTCGTCGTGGGTACGG
CCATCAAGAGCCAGTTCATCACGGACGGGCTCAAGTACTCCCTGGCCACG
GGCAACTGGGGCGACAAGAAGACGGCCACCAAGGCCGGGGTGAGCCAGGT
GCTCAACCGACTCACCTACGCCTCGGCCCTGTCGCACCTCCGAAGGCTCA
ACACCCCCCTTGGGCGAGAGGGAAAGCAGGCGACCCCCCGACAACTCCAC
AACACCCACTGGGGCTTCATCTGTCCGGCCGAGACGCCGGAGGGTCAGGC
TGTGGGCCTAGTGAAGAACCTTGCACTGATGGCGTACATCAGTGTTGGCT
GCTCGCTGTCCCCTATCCTGGAGTTCCTGGAGGAGTGGGCCATGGAGAAC
CTCGACGAGATCGCGCCGCACATGATCGCGCAGACGAACTGCACTAAGGT
GTTCGTGAACGGGAACTGGGTGGGCGTGCACCGCGACCCCAACCGGCTGG
TGCAGACGCTGGTGCACCAGAGACGGGCCCTCGACATCGACGTCGAGGTG
TCCGTCGTCAGGGACATCAAGGGCAGGGAGCTCCGGCTCTACACGGACGC
GGCAATGTGCCGGCCGCTGTTCGTGGTGGAGAACAACCGCCTTCGCATCC
GGAAGAAGCACATCAACGACCTGCACGACCCCAACTACGGCTGGACAAAC
CTCATGCAGCAGGGCGTGGTGGAGTACATCGACACCGAGGAGGAGGAGAC
GACGATGGTCGCCATGGAACCCAAGGATTTGGAAGAGTCCGGCGGGTACT
CGAGCACCTACACCCACTGCGAGATCCACCCCAGCATGATCCTCGGCGTG
TGCGCCTCCATCATCCCCTTCCCGGACCACAACCAGTCCCCACGTAACAC
CTACCAGTCGGCCATGGGGAAGCAGGCCATGGGCATCTACGCGAGTAACT
ACCAGGTGCGC
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