mRNA_E_fasciculatus_S2_contig6853.14984.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6853.14984.1
Unique NamemRNA_E_fasciculatus_S2_contig6853.14984.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Heat (shock protein 40 like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU93_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.420e-95
Identity = 147/167 (88.02%), Postives = 154/167 (92.22%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLPVWDGGRGAGAGWSAHPSTNASALLGDKTVTGSTIVTCSVEFPVRASTALGLLETS 501
            C GERVIQESGWLDLTIPKGAP+QHRIHFPGVGS+ PGRTAGDVEVAINIEPHERFMRDGSNLRME+PISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGE+EIEGGGLPVWDGGRGAG GWS H STNASALL DKTVTGSTIVTCSVEFP   S  L  L+++
Sbjct:  434 CKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSHFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFPDITSERLQGLDSA 600          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-17
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMR---DGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLPVW 342
            CGG R +QE+  LD+ +P GAP  H++ F  VG+  P R AGDV + +   PH    R   D S L + + ++L EAL G+   +  LNG+ V L+   + +     EI G GLP++
Sbjct:   84 CGGSRTVQETKLLDVVVPAGAPEGHKLVFSSVGNEGPLRPAGDVVLTVETHPHPNLTRSTTDPSALELHVNLTLQEALLGYNLTVYTLNGTRVDLSSIAITTDASTREIPGAGLPIF 200          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Chaperone (DNAJ protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KNH9_9EUGL)

HSP 1 Score: 84.7 bits (208), Expect = 9.230e-16
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLP 336
            C G  V+     L+L I +GAP    ++F   G   P +  GD+   +   PHE F RDG NL+M + I+L EAL+GF +E+  ++G  V++    +  H   I + G G+P
Sbjct:  219 CKGVGVMSGDHTLELEIERGAPENTTLNFEMEGDQFPDQIPGDLIFVLRTGPHETFTRDGENLKMNLKITLLEALTGFRKEVAHMDGHVVVIESAEITPHGAIITVSGEGMP 330          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: DnaJ (subfamily A member 1 n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4N796_9TREM)

HSP 1 Score: 84.3 bits (207), Expect = 1.550e-15
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLL-NRTRMISHNGEI-EIEGGGLPVW 342
            C G +V++E   +++ I KG  +   I F G G   PG  AGD+ + I+ +PHERF+R   +L   + ++L+EAL GFTR +  L+G T+L+ ++   +  N E  EIEG G+P +
Sbjct:  195 CDGRKVVREKKVIEVPIDKGMADGESIRFAGDGDREPGLEAGDIIIHIDEQPHERFVRRRMDLIYTMSLTLSEALCGFTRTVDTLDGRTLLMTSKPGEVFTNSEYREIEGEGMPKY 310          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: dnaJ (homolog subfamily A member 2-like n=3 Tax=Coccinellini TaxID=263631 RepID=UPI001E2765E8)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-14
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    7 GERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNG-STVLLNRTRMISHNGEIE-IEGGGLPVW 342
            G++V  E+  L++ I KG     +I F G G  +P   AGDV + +  +PHE+F+RDG NLRME  ++LTEAL GF+  ++ L+G   V+ +    +   G+I+ +E  G+P +
Sbjct:  207 GKKVNSETKILEVHIDKGMKENQKIFFRGEGDQMPDVEAGDVVIVLQQKPHEKFVRDGDNLRMEHTVTLTEALCGFSFVVKHLDGRDLVVTHPVGSVLKPGDIKTVENEGMPQY 320          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Chaperone (protein DnaJ n=1 Tax=Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_52_12b TaxID=1798509 RepID=A0A1F6EY51_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 3.970e-14
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLPVWDGGRG 357
            C G    ++   + + IP G  N   I  PG G  +    AGD+ V ++++PH  F R+GSNL M++P+ LT+AL G T  I+ L G T+ +    M      + + G G+P  DGGRG
Sbjct:  216 CRGRGARRKEEEVRIHIPVGIDNGEMIRMPGQGEAIKAGVAGDLYVKVHVKPHPTFRREGSNLIMDLPVKLTDALLGTTVSIESLEGKTLEVKIPPMKRAEELLRVAGKGIPG-DGGRG 333          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Putative (dnaj chaperone n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CMH1_ANODA)

HSP 1 Score: 78.6 bits (192), Expect = 9.110e-14
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIE-------IEGGGLPV 339
            C G + ++    + + I KG+ +  R   PG G   P  T GDV + I   PH  F R+GSNL +++ I+LTEAL GF + I+ L+G T+++      SH GE+        + G G+P+
Sbjct:  108 CNGRKTVRSRKIIVIDISKGSRDGMRYVIPGEGDQEPNVTPGDVVIVIEETPHALFKRNGSNLILDMQITLTEALLGFQKPIKTLDGRTIII-----ASHPGEVTKHGAARYVLGEGMPI 222          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Putative (dnaj chaperone n=9 Tax=Nyssorhynchus TaxID=44543 RepID=A0A2M4CVL6_ANODA)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-13
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIE-------IEGGGLPV 339
            C G + ++    + + I KG+ +  R   PG G   P  T GDV + I   PH  F R+GSNL +++ I+LTEAL GF + I+ L+G T+++      SH GE+        + G G+P+
Sbjct:  199 CNGRKTVRSRKIIVIDISKGSRDGMRYVIPGEGDQEPNVTPGDVVIVIEETPHALFKRNGSNLILDMQITLTEALLGFQKPIKTLDGRTIII-----ASHPGEVTKHGAARYVLGEGMPI 313          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Chaperone (protein DnaJ n=1 Tax=Candidatus Vogelbacteria bacterium RIFOXYD1_FULL_46_19 TaxID=1802439 RepID=A0A1G2QG35_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.850e-13
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLPV 339
            C G  V++++  + + +P G  +   I F G G  +P   AGD+ V I +EPH+ + RDGS+L+M++ I LT+AL G +  I+ L G  + L     IS    + ++  G+P+
Sbjct:  209 CSGLGVLKKNEEIKIKVPPGIESGEMIRFSGKGEAIPDGQAGDLYVKIRVEPHKFWKRDGSDLKMDLNIKLTDALLGSSYTIKTLEGDDLKLKIPAGISFGEVLRVKDKGVPI 321          
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Match: Chaperone (protein DnaJ n=5 Tax=cellular organisms TaxID=131567 RepID=A0A534KXN5_9EURY)

HSP 1 Score: 77.8 bits (190), Expect = 3.030e-13
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVG-SNLPGRTAGDVEVAINIEPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEIEIEGGGLPVWDG-GRG 357
            C G+  I+E   + + IP+G P+  ++  PG G +   G   GD+ VAI++ PH RF+RDG +L +E+PIS  +A  G   E+  + G+T L     + +H   + + G GLP + G GRG
Sbjct:  227 CSGQGRIEERRTIAVEIPEGVPDGVQLRVPGRGLAGDAGAQPGDLYVAIHVRPHHRFVRDGDDLLIELPISFADAALGTEVEVPTMEGTTRLRVPAGVQTHT-TLRLRGKGLPRFQGHGRG 346          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6853.14984.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Heat1.420e-9588.02shock protein 40 like protein n=2 Tax=Ectocarpus T... [more]
Hypothetical3.000e-1737.61protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Chaperone9.230e-1634.82DNAJ protein n=1 Tax=Perkinsela sp. CCAP 1560/4 Ta... [more]
DnaJ1.550e-1537.93subfamily A member 1 n=2 Tax=Paragonimus TaxID=345... [more]
dnaJ1.450e-1437.72homolog subfamily A member 2-like n=3 Tax=Coccinel... [more]
Chaperone3.970e-1436.13protein DnaJ n=1 Tax=Candidatus Kaiserbacteria bac... [more]
Putative9.110e-1435.00dnaj chaperone n=1 Tax=Anopheles darlingi TaxID=43... [more]
Putative1.690e-1335.00dnaj chaperone n=9 Tax=Nyssorhynchus TaxID=44543 R... [more]
Chaperone1.850e-1333.63protein DnaJ n=1 Tax=Candidatus Vogelbacteria bact... [more]
Chaperone3.030e-1336.36protein DnaJ n=5 Tax=cellular organisms TaxID=1315... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6853contigE_fasciculatus_S2_contig6853:1969..3465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score300.4
Seed ortholog evalue6.4e-79
Seed eggNOG ortholog2880.D7FU93
Model size640
KEGG koko:K03686,ko:K09503
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0712@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-18_001340.1
Cds size636
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.6226482-CDS-E_fasciculatus_S2_contig6853:1970..21431696842342.6226482-CDS-E_fasciculatus_S2_contig6853:1970..2143Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6853 1971..2143 -
1696842342.6406746-CDS-E_fasciculatus_S2_contig6853:2162..23371696842342.6406746-CDS-E_fasciculatus_S2_contig6853:2162..2337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6853 2163..2337 -
1696842342.651955-CDS-E_fasciculatus_S2_contig6853:2599..27521696842342.651955-CDS-E_fasciculatus_S2_contig6853:2599..2752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6853 2600..2752 -
1696842342.66049-CDS-E_fasciculatus_S2_contig6853:3330..34651696842342.66049-CDS-E_fasciculatus_S2_contig6853:3330..3465Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6853 3331..3465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6853.14984.1prot_E_fasciculatus_S2_contig6853.14984.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6853 1971..3465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6853.14984.1

>prot_E_fasciculatus_S2_contig6853.14984.1 ID=prot_E_fasciculatus_S2_contig6853.14984.1|Name=mRNA_E_fasciculatus_S2_contig6853.14984.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=212bp
CGGERVIQESGWLDLTIPKGAPNQHRIHFPGVGSNLPGRTAGDVEVAINI
EPHERFMRDGSNLRMEIPISLTEALSGFTREIQLLNGSTVLLNRTRMISH
NGEIEIEGGGLPVWDGGRGAGAGWSAHPSTNASALLGDKTVTGSTIVTCS
VEFPVRASTALGLLETSDIERGFFLRAFQGCSLSWWGRVPLIMPQQQSFE
ETHGRNDNWLLQ
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mRNA from alignment at E_fasciculatus_S2_contig6853:1969..3465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6853.14984.1 ID=mRNA_E_fasciculatus_S2_contig6853.14984.1|Name=mRNA_E_fasciculatus_S2_contig6853.14984.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1497bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6853:1969..3465- (Ectocarpus fasciculatus EfasUO2)
TGCGGAGGCGAACGCGTCATTCAGGAGTCCGGCTGGCTTGACCTGACAAT CCCCAAAGGAGCGCCAAACCAGCACCGAATTCACTTTCCGGGCGTCGGAT CAAACCTTCCCGGAAGGACGGCGGGCGACGTCGAGGTAGGGCACCGATGC ACTGGTAGACGACAGCCCCAAAACTTGTTGGTTTTGCGCATCGCGTAGTC GTCCAAGCCGAAGTAACATTGTTTCGTGCTTCTTTTGGTGCACCGGCGCC ATTGTGCAGGAGAGGACGGGGCCTTCGACAAGATCCTTCCCGTCTCGTCC TGAAGTCACAATTGTATGGTAACTCGTCATCCTATCTGGCCTGTGTCCGT TTCTCTGTCAAACGACCAAGAAGTCTGTTTGCCAGGAATAGATACGCCCG CGCCACATCACTCCCGAGAACCATTGCTCGGGTGAACATCCAGCTAAGTG GTGTAATGATGCCCGGAAACACACCCTGAAACAGGCGGCGATGAACTTCA GAAAAAAAAATAGCCATCCTGCCACCGCCTTCCTCTGATGTTAGTTAGAG CATGTGCGGTTCGTGCTCCATCACAAACACCCAATTTAGATTGCGCTTTG ATTTAGTTGTCTTTTTCGACTGAACGGTTCGCCAGCTTTCTTGTGACGCG GAATGGGTGAGGCTCGCGCACATATCGCAACTTGCACGCCCTACCCCCCC CGCGTTTTTGAAGGTCGCGATTAACATTGAGCCTCACGAACGGTTCATGC GAGACGGTTCCAATCTACGGATGGAGATACCCATTTCTCTCACGGAAGCT CTCTCCGGCTTTACTCGAGAGATCCAGCTGTTGAATGGGAGCACGGTCCT TCTCAACAGGACACGGGTGAGCGCGGAGAACAGACAAGAAAGTAACGCAG GTTTCCGCCGCAAGGAAACGACAAGCAGGAGTGGAAAGCGAAAGGTCCCT TTCAAAGTTGACCACACAGAGAGATGCATGGTCGAGTTTGCTAGTCTTCT GTTTTGGATGGATCTGTTGCGGTGTATTGTCACGTGGTACAACAGCAGTA CACAATAAACAAACCCAACCAAACAAAAAAAAGGCAACATGATCCTCCAT CTTCGCCTACTTTGCCGCAACTGCACAGATGATCAGCCACAACGGCGAGA TAGAAATCGAAGGCGGGGGTCTCCCGGTGTGGGACGGCGGCCGTGGGGCG GGCGCTGGGTGGAGCGCACACCCCTCAACCAATGCCAGCGCCCTCCTGGG CGACAAAACAGTTACCGGTTCGACAATCGTCACTTGCAGCGTTGAATTTC CAGAGATTACAAGCGAACGTCTTCAGGGCCTCGACAGCGCTGGGGCTGCT TGAGACAAGTGACATCGAGAGAGGTTTTTTCCTCCGCGCTTTCCAAGGTT GTTCCCTGTCATGGTGGGGGCGTGTACCGCTGATCATGCCGCAGCAACAG AGCTTTGAAGAGACGCACGGGAGAAACGACAACTGGCTATTACAAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6853:1969..3465-

>mRNA_E_fasciculatus_S2_contig6853.14984.1 ID=mRNA_E_fasciculatus_S2_contig6853.14984.1|Name=mRNA_E_fasciculatus_S2_contig6853.14984.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=636bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6853:1969..3465- (Ectocarpus fasciculatus EfasUO2)
TGCGGAGGCGAACGCGTCATTCAGGAGTCCGGCTGGCTTGACCTGACAAT
CCCCAAAGGAGCGCCAAACCAGCACCGAATTCACTTTCCGGGCGTCGGAT
CAAACCTTCCCGGAAGGACGGCGGGCGACGTCGAGGTCGCGATTAACATT
GAGCCTCACGAACGGTTCATGCGAGACGGTTCCAATCTACGGATGGAGAT
ACCCATTTCTCTCACGGAAGCTCTCTCCGGCTTTACTCGAGAGATCCAGC
TGTTGAATGGGAGCACGGTCCTTCTCAACAGGACACGGATGATCAGCCAC
AACGGCGAGATAGAAATCGAAGGCGGGGGTCTCCCGGTGTGGGACGGCGG
CCGTGGGGCGGGCGCTGGGTGGAGCGCACACCCCTCAACCAATGCCAGCG
CCCTCCTGGGCGACAAAACAGTTACCGGTTCGACAATCGTCACTTGCAGC
GTTGAATTTCCAGTCAGGGCCTCGACAGCGCTGGGGCTGCTTGAGACAAG
TGACATCGAGAGAGGTTTTTTCCTCCGCGCTTTCCAAGGTTGTTCCCTGT
CATGGTGGGGGCGTGTACCGCTGATCATGCCGCAGCAACAGAGCTTTGAA
GAGACGCACGGGAGAAACGACAACTGGCTATTACAA
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