mRNA_E_fasciculatus_S2_contig685.14982.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig685.14982.1
Unique NamemRNA_E_fasciculatus_S2_contig685.14982.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig685.14982.1 vs.
Match: CRAL-TRIO (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJD0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.020e-35
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHISADALEGGRLGLKGAPPFHAESYLKGGDADGSE 216
            MVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHIS DALEGGRLGLKGAPPFHAESYLKGGDA GS+
Sbjct:  222 MVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHISEDALEGGRLGLKGAPPFHAESYLKGGDAGGSK 293
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig685.14982.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CRAL-TRIO3.020e-3595.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig685contigE_fasciculatus_S2_contig685:26702..27934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score134.4
Seed ortholog evalue2.1e-29
Seed eggNOG ortholog2880.D8LGX4
Model size722
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-14_001570.1
Cds size222
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.4649982-UTR-E_fasciculatus_S2_contig685:26701..272011696842342.4649982-UTR-E_fasciculatus_S2_contig685:26701..27201Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig685 26702..27201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.4811275-CDS-E_fasciculatus_S2_contig685:27201..273781696842342.4811275-CDS-E_fasciculatus_S2_contig685:27201..27378Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig685 27202..27378 -
1696842342.493582-CDS-E_fasciculatus_S2_contig685:27889..279341696842342.493582-CDS-E_fasciculatus_S2_contig685:27889..27934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig685 27890..27934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig685.14982.1prot_E_fasciculatus_S2_contig685.14982.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig685 27202..27934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig685.14982.1

>prot_E_fasciculatus_S2_contig685.14982.1 ID=prot_E_fasciculatus_S2_contig685.14982.1|Name=mRNA_E_fasciculatus_S2_contig685.14982.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
MVYYLWRAISLLLSPVTREKVVVVSGTEQQQREVLLQHISADALEGGRLG
LKGAPPFHAESYLKGGDADGSEP*
back to top

mRNA from alignment at E_fasciculatus_S2_contig685:26702..27934-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig685.14982.1 ID=mRNA_E_fasciculatus_S2_contig685.14982.1|Name=mRNA_E_fasciculatus_S2_contig685.14982.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1233bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig685:26702..27934- (Ectocarpus fasciculatus EfasUO2)
ATGGTCTACTACCTGTGGCGGGCCATCTCGCTTCTGCTCTCACCGGTGCG
TACGGGGTGCCCAACAGAAGGCATGATTTCGTGACAAGCGGGGCAGTGCA
TGCAGCGCGCTGTAGCTTTTTCGAGACGTACTTCGTGTCCCCGAGTTTCG
ATCGAGAATGCCGTGTCTCCTGCGAAGGAGAGCTCACTGAATCCGGTTTA
CTACTGCGGCTGTTGTTAAATTGCACGGTGAAGACACTGCGAGGCTGGCC
GCAGACATGGTGGTCTCCTGGTTTGCTGCTGTACCGTGGACATGTTAAAA
CGCGCCTACCGCAACGGTCATCAAATATGGTACATATTCAGAACCCGACG
ACGCTGGTCATGTTTTTCCATCGAAATATTCTGAGCCCGTCACGCTCTTA
CTTTTTTTTTCGACATTGGCGAGTTTGTCTTTGCATACCAGACGTCCCCA
TGCGCACACCCTAGTCGAGGCATCTCAGCAAGAGCAGTGTGACCAAAACT
ACGGGAACCCTGCCTCTCCTTTATCGCCGCCTGCTTCGTCACAACGACCC
AAACAGGTTACCCGCGAGAAAGTCGTGGTAGTGTCCGGGACAGAGCAACA
GCAGCGAGAGGTGCTGCTGCAGCACATCTCGGCGGACGCGTTGGAAGGCG
GGCGGCTGGGCTTGAAAGGCGCGCCTCCTTTCCACGCGGAGAGCTACCTC
AAAGGTGGCGATGCGGACGGTAGCGAGCCTTAGCATTAATAAATCATAGC
CCGGCGATCCGTACCCAACGTAGCTGGAATTTGTTTTTGCAGCGGTTTGG
GCGGGAAAGCGAGCGGAATAGAGAGACGGTAGTGGCTACTTTCTTTCTTT
CTTTTGTGGTTGCGGCGAATTGTAGCTGTGTCTGAACCCGGAGTGGGCAC
GGCAAGGGCGGCAAGTTTTTTTTCGTCACGGCGCCGCGCCGCACGCACGA
CCCACGAGGCCTAACTTGATGGCGGCGGCGGCGGCGGCGGCGGCGGCCGC
TACGGCAGTGGCAACGACGACGGCACAGTTCCGTGACGGCTAGCGGGGCG
TCAAGTCGCCCGGAAGTGTGGAACCTACTGCTGTGGCGACAAACCTAGGG
TCGGTGGTGGAGACAGATCCCAGCAGTTTTGGGTTGTTGGCGAGCGGCAA
GTGGTGATGTAACGCCGGCAGCTGTTTGAACGGCATCCTGACCCTTTTGT
AGGATAGCTAAAAATGGGGTTCGTTGATTCGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig685:26702..27934-

>mRNA_E_fasciculatus_S2_contig685.14982.1 ID=mRNA_E_fasciculatus_S2_contig685.14982.1|Name=mRNA_E_fasciculatus_S2_contig685.14982.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig685:26702..27934- (Ectocarpus fasciculatus EfasUO2)
ATGGTCTACTACCTGTGGCGGGCCATCTCGCTTCTGCTCTCACCGGTTAC
CCGCGAGAAAGTCGTGGTAGTGTCCGGGACAGAGCAACAGCAGCGAGAGG
TGCTGCTGCAGCACATCTCGGCGGACGCGTTGGAAGGCGGGCGGCTGGGC
TTGAAAGGCGCGCCTCCTTTCCACGCGGAGAGCTACCTCAAAGGTGGCGA
TGCGGACGGTAGCGAGCCTTAG
back to top