mRNA_E_fasciculatus_S2_contig685.14980.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig685.14980.1
Unique NamemRNA_E_fasciculatus_S2_contig685.14980.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 861 bits (2225), Expect = 3.100e-312
Identity = 478/505 (94.65%), Postives = 485/505 (96.04%), Query Frame = 1
Query:  181 MMTSHQHDAITIHSSSAAVTGLAERCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGEEQQATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVHRGLRTDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 1695
            MMT HQHDAITI SSSAAVTG+AE CSAETTYQGEHRVVHIATPGAPPPWLEDEEQGEEQ+ATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQV DWS+RIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRAR+VKKRYLALLTPGP VPTGSMAHCCRSKAFDGSRRPRIYADFD ELLA DKWGGAWQEARSTVLLCAPATG A     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PEE+EAAA+GGEGR E+DGSTAPDAEAT AA AAREEGDH PHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYR VVGRVHRGLR DDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL
Sbjct:    1 MMTYHQHDAITIASSSAAVTGIAEGCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGEEQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGGEGREEEDGSTAPDAEATTAAEAAREEGDHAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.150e-55
Identity = 127/354 (35.88%), Postives = 163/354 (46.05%), Query Frame = 1
Query:  631 GAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVHRGLRTDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWA 1692
            G YLR+H  PR F  +   DW  R++H   D+VV+DKPAGVP+VPT DN   + +++A  A+ G          PLHAVSRLDVCTSG++VFAR   AA  L+    AR V+K Y  ++T G  VP G + HCC ++A  G  +PRIYA FD      D  G  W+ A   VL                                                                      D GS A                        + L TGRTHQ+RLQLAA+G+ IVGD+RY D++G+VH G    D T  FG EPE I L AA +EF+W G  V ++ + P WA
Sbjct:  150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALGG------DAARPLHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVL--------------------------------------------------------------------SHDRGSGAS----------------------TISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAE-PPWA 403          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: RNA (pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 162 bits (410), Expect = 1.490e-40
Identity = 124/359 (34.54%), Postives = 159/359 (44.29%), Query Frame = 1
Query:  631 GAYLRVHCDPRTFPASQVTDWSERIVHKNE-DFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPT------GSMAHCCRSKAFDGSRRPRIYA------DFDRELLASDKW---------GGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVHRGLRTDDDTSRFGQEPEAIALQAARIEF 1641
            G Y R+H +P  +P +    W +RIV+  + DFV VDKP  +P+VPT+ N V+    Q   A+          P PLHAVSRLDVCTSG++VFARHK AA  LNE  R R VKKRY  LL PGP +P       G + H  R+   D   +PRIY       D D  LL  + +         GGAW  A   +L                                                     +  EM  A                    TM A  A  +  +  +   +EL TGRTHQLRLQ A++G  + GD+RYR V GRVHRG+  DD+   FG EP  ++L A+   F
Sbjct:  141 GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL--------ECPAPLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGP-IPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRIL-----------------------------------------------------TEREMNRAELS--------------EVVTMQADHAGIDVRYTEY--EVELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Ribosomal (large subunit pseudouridine synthase D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G898_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.810e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1
Query:  790 CVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRS 1038
            C  QASLAVAG+ PGSRSLPPPLHAVSRLDVCTSG+VVFARHK+A KQLNELFRAR+VKKRYLALLTPGPPV TGSM    R+
Sbjct:   71 CFQQASLAVAGISPGSRSLPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTPGPPVSTGSMVRWRRA 153          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Probable (mitochondrial RNA pseudouridine synthase Rpusd4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE80_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 8.180e-21
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  634 AYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAH 1026
            AY+RVH  P+ FP +   DW  RIVH  +DFVV++KPAGVP VPT+DN +++C+   + A+     G  S   PL +  RLD CT G+VV  R ++     NEL R     +++   LT  PP PTG+  H
Sbjct:  127 AYVRVHVHPKRFPNAYKVDWKARIVHAAQDFVVINKPAGVPVVPTVDNILESCLACTAQAL-----GESS---PLLSTHRLDTCTEGLVVLGRKRDFVAAFNELLRLPGAVQKFYRALTKSPP-PTGASVH 248          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Putative (diaminohydroxyphosphoribosylaminopyrimidine deaminase, tRNA pseudouridine(32) synthase n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6Q2U7_ROSCH)

HSP 1 Score: 105 bits (262), Expect = 1.600e-20
Identity = 122/448 (27.23%), Postives = 168/448 (37.50%), Query Frame = 1
Query:  421 ELVKFGSVYIGEVVDTNWRHPPS---KEKQMTIAAARKKALKSADQAPFRG-TSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRY--------------------RDVVGRVHRGLRTDDDTSRFGQEPE-AIALQAARIEFEWQGRTVVFSTDRPSW 1689
            +L+ FG+VY   V     + PP+   +E ++   A     LK   +A  +G T  E  +  R+       F   G YLRVH  P+ FP     DW  R++  NEDFVV+DKPAG     T DN  ++C    S A+         L  PL    ++D CT G VV AR KE     +   R +QVKK YLAL     PVP G++ H  R         PR+ ++   E          W   +  V+ C     P S                                             EE           VED G  + D                  + C + L TG+THQ+R QLAA G+ +VGD+ Y                    +  +G   + +   +  +R G+EP  AI LQA +I   W      F    P W
Sbjct:  121 DLIHFGAVYYALVCP---KPPPTATPEEMKVYKEATAPSVLKK--RASIKGKTVREAQKTFRI--THVDQFVEDGTYLRVHVHPKRFPRCYEIDWKSRVIAVNEDFVVLDKPAGTTVGGTTDNIEESCATFTSHALG--------LTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKQVKKLYLALAAA--PVPLGTITHYMRPINV----APRLISEDSIER---------WSLCQLEVMECKKVPWPNSVI-------------------------------------------EEKYG--------VEDCGWPSKD----------------YAYECKINLLTGKTHQIRAQLAAHGAPLVGDSMYMPAAIAEIASPELNPFGKHKKHYIGEDEKEIAVTEWMARHGKEPNVAIGLQACQIS--WDDGEHSFEARAPWW 469          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP)

HSP 1 Score: 100 bits (250), Expect = 3.560e-20
Identity = 61/178 (34.27%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  631 GAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHC-CRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAP 1161
            G+Y+RVH  P+ F      DW+ R++ ++EDF+V++KP GVP++ TIDN ++ CV      +  +     SL P     SRLDVCT+G+++FA+ +E     N+    R+ +K Y  LL+ G  V TG++ H  CR +    + RP +   +       D     WQ+A   +L C P
Sbjct:   90 GSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIE-CVMSQVEKIKNI-----SLMP----TSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIY-KLLSEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRB5_KLENI)

HSP 1 Score: 102 bits (254), Expect = 1.040e-19
Identity = 115/450 (25.56%), Postives = 166/450 (36.89%), Query Frame = 1
Query:  421 ELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFE---HMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVH-RGLRTD----------------------DDTSRFGQEPEA-IALQAARIEFEWQGRTVVFSTDRPSW 1689
            +L+KFG+V+   ++      PP   +    +   +   K++D+     +S      MR+ RL   +       G YLRVH  P+ FP     DW  R++ +  D+V++DKPAGVP   T+DN V+NC      A+         L  PL    RLDV T G +V A+     +  N+L   R+V K Y AL    PP+  G + H  + K++     PRI +D  R+          W      +L       P  A                                                     G  R+ED G   P A A               + C + L TGRTHQ+R QLA +G  ++GDT Y       H  GL                         +D   +G EP   +ALQA ++   W   T  +    P W
Sbjct:   66 DLIKFGAVHYAPLLPP----PPPNSRPSVHSQWSESTAKASDEFGLHPSSQALKLMMRVGRLQ--DPFRLLRQGGYLRVHVHPKRFPRCYEVDWRGRVLTETPDYVILDKPAGVPVQGTVDNLVENCAACLLEALG--------LEEPLKVTHRLDVGTEGCLVLAKTPAFLRSFNQLLADRKVHKTYRALAAARPPL--GRLLHWTQPKSY----APRILSDETRD---------GWLPCELEILAVDEVPWPTGAV----------------------------------------------------GSLRMED-GGWPPQATA---------------YECTVRLITGRTHQVRAQLARVGCPLLGDTMYMPGPAIEHLAGLEPSSSSFDLLGAELSRKVAPLHCCLEDRRIYGAEPGGPLALQAWKLR--WDSGTEEYVAGTPWW 416          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPX0_GUITC)

HSP 1 Score: 100 bits (248), Expect = 1.160e-19
Identity = 106/408 (25.98%), Postives = 158/408 (38.73%), Query Frame = 1
Query:  421 ELVKFGSVYIGEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVHRGLRTDD---DTSR-FGQEPEAIALQAAR 1632
            ELVKFG+VY G   D         +KQ  + A R   ++  +  P                         G+Y+RVH  P+   +    DWS R++ +++DF+V+DKP GVP++ TIDNGV+ CV      +  +     SL P     SRLDVCT+G+++FA+ ++   + N+    R+  K YL L                  +        R   D   E          WQ+A   +L C                                                    P +++   QGG  +V +                            ++ L TGRTHQ+RLQ AA+G+ ++GDTRY    G + + +  DD   D SR FG +P+ I LQA R
Sbjct:   24 ELVKFGAVYTGPPQDA------MDKKQSPVKAVR--TMQDVELLP-------------------------GSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPGVPSLTTIDNGVE-CVMSQVEKMRNI-----SLMP----TSRLDVCTAGVLIFAKTRDFCLKTNKAMSERRCDKVYLLL----------------SERELPRGEDLRSRQDLQEE---------GWQDAVLEILDC--------------------------------------------RCLLTFLQPFDLKQ--QGGRRKVFE---------------------------YSVRLITGRTHQIRLQFAALGAPVLGDTRYTPAAGLLFQSV--DDAIGDGSRVFGPDPDVIFLQARR 288          
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Match: Hypothetical (protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812T6T9_9DINO)

HSP 1 Score: 100 bits (248), Expect = 1.190e-18
Identity = 95/348 (27.30%), Postives = 142/348 (40.80%), Query Frame = 1
Query:  631 GAYLRVHCDPRTFP--ASQVTDWSERIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCV--FQASLAVAGMPP-GSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFDGSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEEMEAAAQGGEGRVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRDVVGRVHRGLRTDDDTSRFGQ-----EPEAIALQAARIEFE 1644
            G  LRVH +P+ +   +++  DW++R+++ + ++VVVDKPAGVP  P + NG +  V    A+L++A     G  S    L A  RLDV TSG+ + AR +EAA++  +L    QV KRYLA++  G    T  +     S A  G   PR+ A     +  S      W+ AR+T+L         S  +V                                                        +DGS                          ++L+TGRTHQ+R QLA+MG+ +V D  Y  +   + RG   D+      Q     E   I LQ  ++ FE
Sbjct:  118 GGELRVHTEPKRYRRCSAEGRDWADRLLYVSPEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSIASRESRGKSSGGEDLVACQRLDVATSGLTLLARSREAAERFRKLLCDGQVTKRYLAVVKTGVKAKTDGLLEHWLSDAVFGRPAPRLVAPLSAPVQDSRH---KWRNARTTIL---------STTSV--------------------------------------------------------EDGSQE----------------------MLLDLDTGRTHQIRAQLASMGAPVVNDGLYSHMANFLWRGPCDDEVAENLVQSATSSEDVDIGLQCTQLSFE 375          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig685.14980.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PseudoU_synth_23.100e-31294.65domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Pseudouridine7.150e-5535.88synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
RNA1.490e-4034.54pseudouridine synthase 6, chloroplastic n=1 Tax=Po... [more]
Ribosomal1.810e-3383.13large subunit pseudouridine synthase D n=1 Tax=Ect... [more]
Probable8.180e-2142.75mitochondrial RNA pseudouridine synthase Rpusd4 n=... [more]
Putative1.600e-2027.23diaminohydroxyphosphoribosylaminopyrimidine deamin... [more]
Hypothetical3.560e-2034.27protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 ... [more]
PseudoU_synth_21.040e-1925.56domain-containing protein n=1 Tax=Klebsormidium ni... [more]
PseudoU_synth_21.160e-1925.98domain-containing protein n=1 Tax=Guillardia theta... [more]
Hypothetical1.190e-1827.30protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig685contigE_fasciculatus_S2_contig685:14490..16187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score870.5
Seed ortholog evalue4.2e-250
Seed eggNOG ortholog2880.D8LGX6
Model size1698
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006206,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019858,GO:0034641,GO:0034654,GO:0043094,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046087,GO:0046131,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Exons1
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001540.1
Cds size1698
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842342.257274-CDS-E_fasciculatus_S2_contig685:14489..161871696842342.257274-CDS-E_fasciculatus_S2_contig685:14489..16187Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig685 14490..16187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig685.14980.1prot_E_fasciculatus_S2_contig685.14980.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig685 14490..16187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig685.14980.1

>prot_E_fasciculatus_S2_contig685.14980.1 ID=prot_E_fasciculatus_S2_contig685.14980.1|Name=mRNA_E_fasciculatus_S2_contig685.14980.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=566bp
MLKGLLLTAAAANSWCPSRAFVGVRVELGRRSASAGRSVASQSSPLPPAS
PTAGVVPSSIMMTSHQHDAITIHSSSAAVTGLAERCSAETTYQGEHRVVH
IATPGAPPPWLEDEEQGEEQQATIAELVSHFGAVSRERGVELVKFGSVYI
GEVVDTNWRHPPSKEKQMTIAAARKKALKSADQAPFRGTSFEHMRLRRLH
PWESGNFPPHGAYLRVHCDPRTFPASQVTDWSERIVHKNEDFVVVDKPAG
VPTVPTIDNGVQNCVFQASLAVAGMPPGSRSLPPPLHAVSRLDVCTSGIV
VFARHKEAAKQLNELFRARQVKKRYLALLTPGPPVPTGSMAHCCRSKAFD
GSRRPRIYADFDRELLASDKWGGAWQEARSTVLLCAPATGPASAAAVAED
RERAEAAARALEESAAGAAARLEAELAAGLGLGSGSSPEEMEAAAQGGEG
RVEDDGSTAPDAEATMAAGAAREEGDHVPHLCAMELETGRTHQLRLQLAA
MGSAIVGDTRYRDVVGRVHRGLRTDDDTSRFGQEPEAIALQAARIEFEWQ
GRTVVFSTDRPSWAL*
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mRNA from alignment at E_fasciculatus_S2_contig685:14490..16187-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig685.14980.1 ID=mRNA_E_fasciculatus_S2_contig685.14980.1|Name=mRNA_E_fasciculatus_S2_contig685.14980.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1698bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig685:14490..16187- (Ectocarpus fasciculatus EfasUO2)
ATGCTAAAGGGACTGCTGCTTACGGCTGCTGCTGCGAATTCTTGGTGCCC GAGCCGGGCTTTCGTCGGGGTTCGGGTTGAGCTCGGTCGTCGGTCAGCAT CCGCAGGCAGGAGCGTTGCGTCGCAATCCTCTCCTCTTCCGCCTGCGTCA CCAACTGCCGGCGTTGTTCCCAGCAGCATCATGATGACATCTCACCAGCA CGATGCGATTACCATCCACAGCAGCAGTGCGGCAGTGACAGGGTTAGCGG AACGATGCTCGGCGGAGACGACTTATCAAGGAGAACATCGAGTAGTCCAC ATCGCCACGCCGGGTGCGCCTCCGCCCTGGCTAGAGGACGAGGAACAGGG GGAGGAGCAGCAGGCTACGATAGCCGAGCTCGTCTCTCACTTCGGAGCCG TCAGTCGGGAGCGTGGGGTAGAGCTGGTCAAGTTTGGCAGCGTCTACATC GGCGAGGTGGTCGACACCAACTGGAGACACCCGCCCAGCAAAGAGAAGCA GATGACCATCGCGGCCGCAAGGAAAAAGGCCCTGAAGTCCGCCGACCAGG CGCCCTTTCGCGGGACGTCGTTCGAGCACATGAGGCTGCGGCGCCTCCAC CCCTGGGAGAGCGGCAACTTCCCGCCCCACGGCGCTTACCTCCGGGTGCA CTGCGACCCCCGGACCTTCCCGGCGTCGCAGGTCACGGACTGGAGCGAAC GGATCGTGCACAAGAACGAAGACTTCGTGGTGGTCGACAAGCCCGCGGGG GTGCCGACGGTGCCGACCATCGACAACGGCGTGCAGAACTGCGTGTTCCA AGCGAGCCTTGCGGTGGCGGGGATGCCCCCCGGGTCGCGGTCTCTACCGC CGCCTCTGCACGCGGTGTCGCGGCTAGACGTCTGCACGTCAGGGATCGTC GTTTTCGCGAGGCACAAGGAGGCCGCCAAGCAGCTGAACGAGCTGTTCCG CGCCAGGCAGGTGAAGAAGCGGTACCTGGCCCTCCTCACCCCGGGCCCGC CCGTGCCGACGGGGTCGATGGCCCACTGCTGCCGTTCGAAGGCCTTCGAC GGGTCTCGCCGGCCGAGGATATACGCCGACTTCGACCGGGAGCTTCTCGC GAGCGACAAGTGGGGAGGCGCGTGGCAAGAGGCGAGGTCGACGGTCCTGC TCTGCGCCCCCGCCACCGGTCCGGCGAGCGCCGCCGCGGTGGCGGAGGAC CGCGAGCGGGCGGAGGCGGCCGCAAGAGCCCTGGAGGAATCGGCGGCCGG CGCAGCGGCGAGGCTGGAGGCAGAGCTTGCGGCGGGGTTGGGGCTTGGTT CGGGGTCTTCGCCGGAAGAAATGGAGGCGGCGGCGCAAGGAGGAGAGGGA CGAGTGGAGGACGACGGAAGCACCGCTCCCGATGCGGAAGCTACCATGGC GGCAGGAGCAGCACGGGAAGAAGGGGACCATGTCCCCCACCTCTGCGCCA TGGAACTCGAGACGGGTCGGACGCACCAGCTGCGGTTGCAGCTGGCGGCG ATGGGGTCGGCAATCGTGGGCGATACACGATATCGCGACGTTGTGGGGCG CGTGCATCGGGGTTTGAGAACAGACGACGACACGTCTAGGTTTGGGCAGG AGCCGGAGGCGATCGCGCTGCAGGCTGCGCGGATAGAGTTCGAATGGCAA GGTAGAACGGTCGTCTTCTCAACGGACCGTCCGTCATGGGCCCTGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig685:14490..16187-

>mRNA_E_fasciculatus_S2_contig685.14980.1 ID=mRNA_E_fasciculatus_S2_contig685.14980.1|Name=mRNA_E_fasciculatus_S2_contig685.14980.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1698bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig685:14490..16187- (Ectocarpus fasciculatus EfasUO2)
ATGCTAAAGGGACTGCTGCTTACGGCTGCTGCTGCGAATTCTTGGTGCCC
GAGCCGGGCTTTCGTCGGGGTTCGGGTTGAGCTCGGTCGTCGGTCAGCAT
CCGCAGGCAGGAGCGTTGCGTCGCAATCCTCTCCTCTTCCGCCTGCGTCA
CCAACTGCCGGCGTTGTTCCCAGCAGCATCATGATGACATCTCACCAGCA
CGATGCGATTACCATCCACAGCAGCAGTGCGGCAGTGACAGGGTTAGCGG
AACGATGCTCGGCGGAGACGACTTATCAAGGAGAACATCGAGTAGTCCAC
ATCGCCACGCCGGGTGCGCCTCCGCCCTGGCTAGAGGACGAGGAACAGGG
GGAGGAGCAGCAGGCTACGATAGCCGAGCTCGTCTCTCACTTCGGAGCCG
TCAGTCGGGAGCGTGGGGTAGAGCTGGTCAAGTTTGGCAGCGTCTACATC
GGCGAGGTGGTCGACACCAACTGGAGACACCCGCCCAGCAAAGAGAAGCA
GATGACCATCGCGGCCGCAAGGAAAAAGGCCCTGAAGTCCGCCGACCAGG
CGCCCTTTCGCGGGACGTCGTTCGAGCACATGAGGCTGCGGCGCCTCCAC
CCCTGGGAGAGCGGCAACTTCCCGCCCCACGGCGCTTACCTCCGGGTGCA
CTGCGACCCCCGGACCTTCCCGGCGTCGCAGGTCACGGACTGGAGCGAAC
GGATCGTGCACAAGAACGAAGACTTCGTGGTGGTCGACAAGCCCGCGGGG
GTGCCGACGGTGCCGACCATCGACAACGGCGTGCAGAACTGCGTGTTCCA
AGCGAGCCTTGCGGTGGCGGGGATGCCCCCCGGGTCGCGGTCTCTACCGC
CGCCTCTGCACGCGGTGTCGCGGCTAGACGTCTGCACGTCAGGGATCGTC
GTTTTCGCGAGGCACAAGGAGGCCGCCAAGCAGCTGAACGAGCTGTTCCG
CGCCAGGCAGGTGAAGAAGCGGTACCTGGCCCTCCTCACCCCGGGCCCGC
CCGTGCCGACGGGGTCGATGGCCCACTGCTGCCGTTCGAAGGCCTTCGAC
GGGTCTCGCCGGCCGAGGATATACGCCGACTTCGACCGGGAGCTTCTCGC
GAGCGACAAGTGGGGAGGCGCGTGGCAAGAGGCGAGGTCGACGGTCCTGC
TCTGCGCCCCCGCCACCGGTCCGGCGAGCGCCGCCGCGGTGGCGGAGGAC
CGCGAGCGGGCGGAGGCGGCCGCAAGAGCCCTGGAGGAATCGGCGGCCGG
CGCAGCGGCGAGGCTGGAGGCAGAGCTTGCGGCGGGGTTGGGGCTTGGTT
CGGGGTCTTCGCCGGAAGAAATGGAGGCGGCGGCGCAAGGAGGAGAGGGA
CGAGTGGAGGACGACGGAAGCACCGCTCCCGATGCGGAAGCTACCATGGC
GGCAGGAGCAGCACGGGAAGAAGGGGACCATGTCCCCCACCTCTGCGCCA
TGGAACTCGAGACGGGTCGGACGCACCAGCTGCGGTTGCAGCTGGCGGCG
ATGGGGTCGGCAATCGTGGGCGATACACGATATCGCGACGTTGTGGGGCG
CGTGCATCGGGGTTTGAGAACAGACGACGACACGTCTAGGTTTGGGCAGG
AGCCGGAGGCGATCGCGCTGCAGGCTGCGCGGATAGAGTTCGAATGGCAA
GGTAGAACGGTCGTCTTCTCAACGGACCGTCCGTCATGGGCCCTGTAA
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