mRNA_E_fasciculatus_S2_contig6847.14976.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6847.14976.1
Unique NamemRNA_E_fasciculatus_S2_contig6847.14976.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.090e-23
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V RPSVRGGIGSL ++ TL F KAAKGDL   L+ +GRCVEIFERYPGLCRSMIG HLAH
Sbjct:  124 VDRPSVRGGIGSLQVNSTLVFKKAAKGDLHGALKRIGRCVEIFERYPGLCRSMIGCHLAH 183
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BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-21
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V RPSVRGGIGSL ++ TL F KAAKGD+   L+ +GRCV+IFERYPGLCRSMIG HLAH
Sbjct:  355 VDRPSVRGGIGSLQVNSTLVFKKAAKGDVHGALKRVGRCVQIFERYPGLCRSMIGCHLAH 414
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BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.540e-21
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V RPS+RGGIG+LLI+G L F KAAKGDL A LE +GRC+E+ ERYPGLCR MIG H+ H
Sbjct:  288 VDRPSIRGGIGALLINGILVFEKAAKGDLRATLERIGRCIEVLERYPGLCRCMIGCHMTH 347
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU06_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.630e-20
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V RPSVRGG G LLI+  L FTKAA+GDL A LE +GRCVE+ ERYPGLCRS +G HLAH
Sbjct:  101 VDRPSVRGGFGGLLINLGLIFTKAAQGDLHAALERIGRCVEVCERYPGLCRSTVGCHLAH 160
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BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.680e-20
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V RPS+RGGIGSLLI+GTL F KAAKGD  A LE +GRCVE+FE YPG+CR  I  H AH
Sbjct:  407 VDRPSIRGGIGSLLINGTLVFEKAAKGDRQATLERIGRCVEVFELYPGMCRCTIAHHKAH 466
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.140e-18
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:   29 RPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            RP++RGGIGSLLI+ TL F K AKGDL+A LE +GRCV +FERYPGLC   +G+H AH
Sbjct:  285 RPTIRGGIGSLLINLTLVFVKGAKGDLNAALERVGRCVAVFERYPGLCSGTMGYHNAH 342
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.050e-15
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSM-IGFHLAHT 205
            V RP +R G+G LLI+ TLAF KAAKGD    LE LGRCVE+FE YPG+CR M +  HLAH+
Sbjct:  407 VDRPYIRTGVGGLLINMTLAFQKAAKGDAGGTLERLGRCVEVFELYPGVCRYMTLWCHLAHS 468
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.870e-15
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:   23 VSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            V R S+R GIG L IDG      AAKGDL A  E +GRC+E+ ERYPGLCR MIG H+ H
Sbjct:  348 VDRSSIRRGIGVLFIDGPCIVETAAKGDLHATRERMGRCIEVLERYPGLCRCMIGCHMTH 407
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.290e-15
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:   29 RPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            RP +R GIG L+I+GTL F KAAKGD    +E + RCVE+FE +PG+CR  +G H+AH
Sbjct:  364 RPLIRQGIGGLIINGTLVFEKAAKGDFSGAVERIDRCVEVFETFPGVCRFFMGSHVAH 421
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 7.090e-15
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   20 LVSRPSVRGGIGSLLIDGTLAFTKAAKGDLDAVLESLGRCVEIFERYPGLCRSMIGFHLAH 202
            +  RP +R GIG L+I+GTL F KAAKGD    +E + RCVE+FE +PG+CR  +G H+AH
Sbjct:  281 VADRPLIRQGIGGLIINGTLVFEKAAKGDFTGAVERIDRCVEVFEGFPGVCRFFMGSHVAH 341
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6847.14976.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
Uncharacterized3.090e-2376.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.000e-2173.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.540e-2170.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.630e-2071.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Zn(2)-C69.680e-2070.00fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Zn(2)-C62.140e-1867.24fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Zn(2)-C62.050e-1562.90fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Zn(2)-C63.870e-1560.00fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Zn(2)-C65.290e-1556.90fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized7.090e-1554.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6847contigE_fasciculatus_S2_contig6847:3264..4443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size208
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.622407-CDS-E_fasciculatus_S2_contig6847:3263..33351696842341.622407-CDS-E_fasciculatus_S2_contig6847:3263..3335Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6847 3264..3335 +
1696842341.6316113-CDS-E_fasciculatus_S2_contig6847:3650..37221696842341.6316113-CDS-E_fasciculatus_S2_contig6847:3650..3722Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6847 3651..3722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.6459122-UTR-E_fasciculatus_S2_contig6847:3722..37641696842341.6459122-UTR-E_fasciculatus_S2_contig6847:3722..3764Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6847 3723..3764 +
1696842341.6602798-UTR-E_fasciculatus_S2_contig6847:4421..44431696842341.6602798-UTR-E_fasciculatus_S2_contig6847:4421..4443Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6847 4422..4443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6847.14976.1prot_E_fasciculatus_S2_contig6847.14976.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6847 3264..3722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6847.14976.1

>prot_E_fasciculatus_S2_contig6847.14976.1 ID=prot_E_fasciculatus_S2_contig6847.14976.1|Name=mRNA_E_fasciculatus_S2_contig6847.14976.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=48bp
MRWCGDSGEQTKRSWGYRQPSHRRNPCLYEGSKRRSGCRPGELRPLC*
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mRNA from alignment at E_fasciculatus_S2_contig6847:3264..4443+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6847.14976.1 ID=mRNA_E_fasciculatus_S2_contig6847.14976.1|Name=mRNA_E_fasciculatus_S2_contig6847.14976.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6847:3264..4443+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGTGGTGCGGTGACTCTGGTGAGCAGACCAAGCGTTCGTGGGGGTA
TCGGCAGCCTTCTCATCGACGGGTAAGCTGGGGATGAGTTCTGGATGGGA
AAATATTCGTGACTCTACTTGTCGATGCTGCGTTTGTTGTGAACGGCTGC
ACCATGCTCAGATCGCCCGGAGTGACCATCAAGTGATCAAAGCATACCTG
AGATGCCACGCAGTCTTTCATCACCAACCATTTGGTCAGCTTCACATTTT
TTCGTTCATTCGTCACCTTGGCGAGTTCCGATGAAAGCTATGACTTTACG
TTGAAACGCTTTTAGTGGGCAAGGGTGTCGCATCGAACGAGCCTTGCTCA
TACTCGACCACGTTAACATATTTTCCGATTTCACCAGAACCCTTGCCTTT
ACGAAGGCAGCAAAAGGCGATCTGGATGCCGTCCTGGAGAGCTTAGGCCG
CTGTGTTGAGATTTTCGAGCGATATCCTGGCTTGTGTCGCAGCATGATAG
GGTGAGTAAAACCTTCAGAGGTGATGTGACGTGGAAACCTCCGGTCTCAT
TTACAGACGGCGTGAGCTATGTCCGCTGGCCGTCGATAAACGCATTGGCC
GTTCATAAAATGAAGTTCATGCTAAGGGAGTCCGTTCACGCATGAAGTCT
GTGGCGATGGCACTGTAGTTCACAGCATTTGCATGGTGTATTATTTTCCC
GTTCTCGATAGCACCTTTCAGGCCAAGGGCTCCACCAACTGTTACCTTTT
TGTGCTTGCGTACTGCTGTTTGCGGGTTAACCTCATGGGCTCTCTGCTTT
TCTGCTTGAACAGAGTGCAATACTTGACAAGGCTCCAAGCTCTGACGTGG
GTACGGTCGTCAAGCTATTCGGTCGACGCATGATCTGTTGTTCAAGAAAC
CCCGAGAAATAGGTAGTCGTCACTGAATGGTTTATGTACGGTGCGCCTGC
TTTCTCTGAGATACATATGCCAGATTGCTCTTCATCCAGACAGCAGCAAC
GCAGCTTTGCTCACAACAAGTGCAATCAATAGTATGGACTGTTGTTGCGC
TGGTTTACAAATCCCGTCGTGGTGTACCGAGCGGCGTGCGCTATGTCTGG
ACATTGTCGAATGCATCATGTTTCCCTCCGCCCTCCGCCGCTGACGTGTA
CATGGAAGATTCCACCTGGCGCACACGACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6847:3264..4443+

>mRNA_E_fasciculatus_S2_contig6847.14976.1 ID=mRNA_E_fasciculatus_S2_contig6847.14976.1|Name=mRNA_E_fasciculatus_S2_contig6847.14976.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6847:3264..4443+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGTGGTGCGGTGACTCTGGTGAGCAGACCAAGCGTTCGTGGGGGTA
TCGGCAGCCTTCTCATCGACGGAACCCTTGCCTTTACGAAGGCAGCAAAA
GGCGATCTGGATGCCGTCCTGGAGAGCTTAGGCCGCTGTGTTGA
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