mRNA_E_fasciculatus_S2_contig6847.14975.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6847.14975.1
Unique NamemRNA_E_fasciculatus_S2_contig6847.14975.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.680e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   28 VLPREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLID 159
            +LP E A AM T S  GN LDFEPLE+AVDRPSVRGGIGSL ++
Sbjct:   96 LLPGEVANAMGTVSASGNFLDFEPLEEAVDRPSVRGGIGSLQVN 139
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 8.680e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   28 VLPREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLID 159
            +LP E A AM T S  GN LDFEPLE+AVDRPSVRGGIGSL ++
Sbjct:  327 LLPGEVANAMGTVSASGNFLDFEPLEEAVDRPSVRGGIGSLQVN 370
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.710e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   31 LPREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLIDG 162
            LP E +EAM T     N+L FEPLE+AVDRPS+RGGIGSLLI+G
Sbjct:  380 LPGEISEAMGTVFGDRNLLVFEPLEEAVDRPSIRGGIGSLLING 423
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU05_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.160e-7
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   34 PREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLID 159
            P+E ++A++T S R + + FEPLE+AVDRPSVRGG G LLI+
Sbjct:  250 PQEVSDAIETCSERVSGVSFEPLEEAVDRPSVRGGFGGLLIN 291
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU06_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.500e-7
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   31 LPREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLID 159
            LPRE ++A+ T       L FEPLE+AVDRPSVRGG G LLI+
Sbjct:   74 LPREVSDAIGTYLESVRCLSFEPLEEAVDRPSVRGGFGGLLIN 116
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.650e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   40 EAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSLLIDG 162
            + + AM      G+ + FEPLE+AVDRPS+RGGIG+LLI+G
Sbjct:  264 DLSNAMGVLLENGSCIHFEPLEEAVDRPSIRGGIGALLING 304
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6847.14975.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized4.680e-1170.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.680e-1170.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Zn(2)-C63.710e-968.18fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized2.160e-759.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.500e-760.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.650e-656.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6847contigE_fasciculatus_S2_contig6847:2908..3339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.8155055-CDS-E_fasciculatus_S2_contig6847:2907..30261696842341.8155055-CDS-E_fasciculatus_S2_contig6847:2907..3026Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6847 2908..3026 +
1696842341.8250668-CDS-E_fasciculatus_S2_contig6847:3293..33391696842341.8250668-CDS-E_fasciculatus_S2_contig6847:3293..3339Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6847 3294..3339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6847.14975.1prot_E_fasciculatus_S2_contig6847.14975.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6847 2908..3339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6847.14975.1

>prot_E_fasciculatus_S2_contig6847.14975.1 ID=prot_E_fasciculatus_S2_contig6847.14975.1|Name=mRNA_E_fasciculatus_S2_contig6847.14975.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=55bp
RSDTTRSRKVLPREAAEAMKTASRRGNVLDFEPLEKAVDRPSVRGGIGSL
LIDG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig6847:2908..3339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6847.14975.1 ID=mRNA_E_fasciculatus_S2_contig6847.14975.1|Name=mRNA_E_fasciculatus_S2_contig6847.14975.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6847:2908..3339+ (Ectocarpus fasciculatus EfasUO2)
AGGTCAGACACAACTCGGTCCAGAAAGGTGCTGCCTCGGGAGGCAGCCGA
AGCTATGAAGACGGCGTCAAGGCGTGGGAACGTGCTCGACTTTGAGCCGC
TCGAAAAAGCAGTAGATCGGTGAGTTGAATCATGTGCTACTAAACACATT
TTGTTGAGCGTATCCGTCATCTGACTGTATGGGATACAGGTCGGAAGACA
GTTCCCACCGATGCACCACTATCGTGATGCTGTGAGGGTGGTTATCAGGG
GCTACCGAGACCGCTCGTTGCCTCGGCGTCCCCAGTCCCGTGCTAGCTCA
CACCTTCCCGTACATCCTCTGTTGTATCTCGTGATCGGTCTGCATGTCTA
AATGGGATGCGGTGGTGCGGTGACTCTGGTGAGCAGACCAAGCGTTCGTG
GGGGTATCGGCAGCCTTCTCATCGACGGGTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6847:2908..3339+

>mRNA_E_fasciculatus_S2_contig6847.14975.1 ID=mRNA_E_fasciculatus_S2_contig6847.14975.1|Name=mRNA_E_fasciculatus_S2_contig6847.14975.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=165bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6847:2908..3339+ (Ectocarpus fasciculatus EfasUO2)
AGGTCAGACACAACTCGGTCCAGAAAGGTGCTGCCTCGGGAGGCAGCCGA
AGCTATGAAGACGGCGTCAAGGCGTGGGAACGTGCTCGACTTTGAGCCGC
TCGAAAAAGCAGTAGATCGACCAAGCGTTCGTGGGGGTATCGGCAGCCTT
CTCATCGACGGGTAA
back to top