mRNA_E_fasciculatus_S2_contig6844.14971.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6844.14971.1
Unique NamemRNA_E_fasciculatus_S2_contig6844.14971.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6844.14971.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM5_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 4.280e-112
Identity = 278/370 (75.14%), Postives = 287/370 (77.57%), Query Frame = 1 
Query:    1 MELSKAREAEGAWLRAQQESAASXXXXXXXXXXXXXXXXXXXTREALVGDGGRLLREENRXXXXXXXXXXXXASLLRSEAXEAXXXXXXLSALRAQEEEGRTAVEACSLRGDMSIARASGGGGDCSSGPCVGATSAVAGGVP------------VSGVMLPSKVPDSGLNGVVVVAAAEAGQGYPALANVGLAAAAVAADGTAGAGRLGLMSIEPGPSPAWPRRSSAGGDSALSDNIVSISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SRRKAELQRAIEEEAERVYLELRANPPPAIRALLAARGEMDELVAEARSTLAGLKPSPPAAAAAEQVKPTVRLPEPQQSRSATPPLVDAAVNAR 1071
            MELSKAREAEGAWLRAQQ     XXXXXXXXXXXXXXXXXXXTRE LVGDGGRLLREENR XXXXXXXXXX A LLRSEA EA      LSALRA+E+ G TA EACSLRGDMS+A ASGGGG C+S PCVGA  AVAGGVP            VSGVMLPS+V DSG NGVV  AA  A Q  PA AN GLAAA+        AGRLGLMSIEPGPSPAWPRRSSA G SALSDNIVS+SN                XXXXXXXXXXXXXXXXX SRRK ELQRAIEEEAERVYLELRANPPPAIRALL ARGEMD+LVAEARSTL GLKP PP   AAEQVKP VRLPE Q+SRSATPPLVDAAVNAR
Sbjct:   71 MELSKAREAEGAWLRAQQXXXXXXXXXXXXXXXXXXXXXXXXTREDLVGDGGRLLREENRRXXXXXXXXXXEAFLLRSEAEEAKRLAGELSALRAKEDVGSTAAEACSLRGDMSVAGASGGGG-CTSEPCVGAARAVAGGVPASPAEGQRPATEVSGVMLPSEVRDSGSNGVVGAAAVGAVQEPPASANCGLAAAS--------AGRLGLMSIEPGPSPAWPRRSSATGGSALSDNIVSVSNSSSNNSRGERDSRSEGXXXXXXXXXXXXXXXXXXSRRKGELQRAIEEEAERVYLELRANPPPAIRALLEARGEMDKLVAEARSTLEGLKP-PPRPPAAEQVKPPVRLPETQRSRSATPPLVDAAVNAR 430
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6844.14971.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.280e-11275.14protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6844contigE_fasciculatus_S2_contig6844:6987..8060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1074
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000310.1
Cds size1074
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.4745781-CDS-E_fasciculatus_S2_contig6844:6986..80601696842341.4745781-CDS-E_fasciculatus_S2_contig6844:6986..8060Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6844 6987..8060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6844.14971.1prot_E_fasciculatus_S2_contig6844.14971.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6844 6987..8060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6844.14971.1

>prot_E_fasciculatus_S2_contig6844.14971.1 ID=prot_E_fasciculatus_S2_contig6844.14971.1|Name=mRNA_E_fasciculatus_S2_contig6844.14971.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=358bp
MELSKAREAEGAWLRAQQESAASAAKAPSPSGLSLTLPEPEPTREALVGD
GGRLLREENRRLAEENGRLVEEASLLRSEAEEAKRRAEELSALRAQEEEG
RTAVEACSLRGDMSIARASGGGGDCSSGPCVGATSAVAGGVPVSGVMLPS
KVPDSGLNGVVVVAAAEAGQGYPALANVGLAAAAVAADGTAGAGRLGLMS
IEPGPSPAWPRRSSAGGDSALSDNIVSISNSSSNNSRGGERDSRSEGGER
QWEEEEDDEEEKDSRRKAELQRAIEEEAERVYLELRANPPPAIRALLAAR
GEMDELVAEARSTLAGLKPSPPAAAAAEQVKPTVRLPEPQQSRSATPPLV
DAAVNAR*
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mRNA from alignment at E_fasciculatus_S2_contig6844:6987..8060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6844.14971.1 ID=mRNA_E_fasciculatus_S2_contig6844.14971.1|Name=mRNA_E_fasciculatus_S2_contig6844.14971.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1074bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6844:6987..8060- (Ectocarpus fasciculatus EfasUO2)
ATGGAGCTCTCCAAGGCGCGCGAAGCCGAAGGGGCTTGGTTGCGGGCTCA
GCAAGAATCGGCAGCTTCCGCGGCGAAGGCGCCGAGCCCGTCCGGCCTGT
CGCTAACGCTTCCGGAGCCGGAGCCGACAAGGGAAGCCTTGGTGGGTGAC
GGTGGCCGTCTCCTCCGCGAGGAGAACAGGCGGCTGGCCGAAGAAAACGG
GCGGCTGGTCGAGGAGGCGTCTTTGCTCCGCTCAGAGGCCGAGGAGGCGA
AGCGGCGGGCGGAAGAGCTGTCGGCGCTGCGCGCCCAGGAGGAGGAGGGA
CGCACAGCCGTGGAAGCGTGCTCTCTGCGCGGAGACATGTCGATAGCGCG
GGCAAGTGGTGGTGGTGGTGATTGTAGCAGTGGGCCGTGCGTTGGTGCTA
CCAGTGCCGTAGCCGGCGGTGTCCCCGTGAGCGGGGTCATGCTTCCGAGC
AAGGTGCCGGATTCGGGCTTGAACGGTGTTGTCGTTGTTGCTGCCGCGGA
GGCGGGGCAAGGATACCCGGCCTTGGCGAACGTTGGGCTGGCGGCAGCGG
CAGTAGCCGCCGACGGGACGGCGGGTGCCGGGCGTCTGGGGTTGATGTCA
ATCGAGCCAGGACCGTCGCCGGCGTGGCCGAGGCGGTCGAGCGCGGGGGG
CGACAGCGCCCTGTCTGACAACATCGTGAGCATCAGCAACAGCAGCAGCA
ACAACAGCAGAGGAGGAGAAAGGGATAGCCGAAGCGAGGGGGGCGAGAGG
CAGTGGGAGGAAGAGGAGGACGACGAGGAGGAGAAAGATAGTAGACGGAA
GGCCGAGCTCCAACGGGCGATCGAAGAGGAGGCCGAGCGAGTTTATCTGG
AGCTTCGAGCGAACCCTCCGCCGGCGATAAGGGCGCTGCTTGCGGCGAGG
GGCGAGATGGACGAGCTTGTGGCTGAGGCACGGTCGACGCTGGCGGGCCT
GAAGCCGTCACCGCCGGCGGCGGCGGCGGCGGAGCAAGTGAAGCCCACCG
TGCGTTTGCCTGAGCCACAGCAGTCCAGGTCGGCTACACCGCCTCTCGTT
GATGCCGCCGTGAATGCCAGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6844:6987..8060-

>mRNA_E_fasciculatus_S2_contig6844.14971.1 ID=mRNA_E_fasciculatus_S2_contig6844.14971.1|Name=mRNA_E_fasciculatus_S2_contig6844.14971.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1074bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6844:6987..8060- (Ectocarpus fasciculatus EfasUO2)
ATGGAGCTCTCCAAGGCGCGCGAAGCCGAAGGGGCTTGGTTGCGGGCTCA
GCAAGAATCGGCAGCTTCCGCGGCGAAGGCGCCGAGCCCGTCCGGCCTGT
CGCTAACGCTTCCGGAGCCGGAGCCGACAAGGGAAGCCTTGGTGGGTGAC
GGTGGCCGTCTCCTCCGCGAGGAGAACAGGCGGCTGGCCGAAGAAAACGG
GCGGCTGGTCGAGGAGGCGTCTTTGCTCCGCTCAGAGGCCGAGGAGGCGA
AGCGGCGGGCGGAAGAGCTGTCGGCGCTGCGCGCCCAGGAGGAGGAGGGA
CGCACAGCCGTGGAAGCGTGCTCTCTGCGCGGAGACATGTCGATAGCGCG
GGCAAGTGGTGGTGGTGGTGATTGTAGCAGTGGGCCGTGCGTTGGTGCTA
CCAGTGCCGTAGCCGGCGGTGTCCCCGTGAGCGGGGTCATGCTTCCGAGC
AAGGTGCCGGATTCGGGCTTGAACGGTGTTGTCGTTGTTGCTGCCGCGGA
GGCGGGGCAAGGATACCCGGCCTTGGCGAACGTTGGGCTGGCGGCAGCGG
CAGTAGCCGCCGACGGGACGGCGGGTGCCGGGCGTCTGGGGTTGATGTCA
ATCGAGCCAGGACCGTCGCCGGCGTGGCCGAGGCGGTCGAGCGCGGGGGG
CGACAGCGCCCTGTCTGACAACATCGTGAGCATCAGCAACAGCAGCAGCA
ACAACAGCAGAGGAGGAGAAAGGGATAGCCGAAGCGAGGGGGGCGAGAGG
CAGTGGGAGGAAGAGGAGGACGACGAGGAGGAGAAAGATAGTAGACGGAA
GGCCGAGCTCCAACGGGCGATCGAAGAGGAGGCCGAGCGAGTTTATCTGG
AGCTTCGAGCGAACCCTCCGCCGGCGATAAGGGCGCTGCTTGCGGCGAGG
GGCGAGATGGACGAGCTTGTGGCTGAGGCACGGTCGACGCTGGCGGGCCT
GAAGCCGTCACCGCCGGCGGCGGCGGCGGCGGAGCAAGTGAAGCCCACCG
TGCGTTTGCCTGAGCCACAGCAGTCCAGGTCGGCTACACCGCCTCTCGTT
GATGCCGCCGTGAATGCCAGATAG
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