mRNA_E_fasciculatus_S2_contig6841.14967.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6841.14967.1
Unique NamemRNA_E_fasciculatus_S2_contig6841.14967.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Match: DDE (Tnp4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q2_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 7.640e-13
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 2 
Query:  131 MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMSSV 256
            MA LARARI HERYNECL VIA+AVLCLCLGHDDLF VMSSV
Sbjct:    1 MARLARARISHERYNECLSVIALAVLCLCLGHDDLFVVMSSV 42
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BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  131 MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMS 250
            MA LAR RIR+ERY+EC+LV+ +AVLC   G +D+F VM+
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMA 40
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.400e-5
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  131 MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMS 250
            MA LAR RIR+ERY+EC+LV+ +AVLC   G +D+F VM+
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMA 40
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Match: DDE (Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.090e-5
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:  131 MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMSS 253
            MA LAR RIR+ERY+EC+LV+ +AVLC   G +D+F VM++
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMAT 41
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA9_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 9.620e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  131 MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMS 250
            MA L R RIR+ERY+EC+ ++A+A+LC   G +DLF VM+
Sbjct:    1 MARLERGRIRYERYDECMQIMALALLCALAGEEDLFLVMT 40
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6841.14967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
DDE7.640e-1388.10Tnp4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
Uncharacterized1.110e-560.00protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.400e-560.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DDE4.090e-558.54Tnp4 domain-containing protein n=3 Tax=Ectocarpus ... [more]
Uncharacterized9.620e-555.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6841contigE_fasciculatus_S2_contig6841:3838..4207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.2
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog2880.D7G6Q2
Model size370
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
Cds size165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.132944-UTR-E_fasciculatus_S2_contig6841:3837..39671696842341.132944-UTR-E_fasciculatus_S2_contig6841:3837..3967Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6841 3838..3967 +
1696842341.1589444-UTR-E_fasciculatus_S2_contig6841:4132..42071696842341.1589444-UTR-E_fasciculatus_S2_contig6841:4132..4207Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6841 4133..4207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842341.1474335-CDS-E_fasciculatus_S2_contig6841:3967..41321696842341.1474335-CDS-E_fasciculatus_S2_contig6841:3967..4132Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6841 3968..4132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6841.14967.1prot_E_fasciculatus_S2_contig6841.14967.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6841 3968..4132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6841.14967.1

>prot_E_fasciculatus_S2_contig6841.14967.1 ID=prot_E_fasciculatus_S2_contig6841.14967.1|Name=mRNA_E_fasciculatus_S2_contig6841.14967.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=55bp
MACLARARIRHERYNECLLVIAMAVLCLCLGHDDLFDVMSSVLACFNSKN
TTSS*
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mRNA from alignment at E_fasciculatus_S2_contig6841:3838..4207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6841.14967.1 ID=mRNA_E_fasciculatus_S2_contig6841.14967.1|Name=mRNA_E_fasciculatus_S2_contig6841.14967.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=370bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6841:3838..4207+ (Ectocarpus fasciculatus EfasUO2)
CCAGGAATTAAAATTTAGAAAAGAGCGAGCATGCGGCTAGCATGGAAACC
CTAACGGCCGCAGATGTTCGAGCTCCGAGCTTGCCACGCTCCAAACCTAC
AGCAAACACACGCGCACATCGCAGGAGGCCATGGCATGCCTCGCTCGTGC
AAGGATCCGCCATGAGAGGTATAACGAGTGTCTCTTAGTCATCGCGATGG
CCGTGCTCTGCTTGTGTCTGGGACATGATGATCTTTTTGACGTGATGAGC
TCTGTGTTGGCCTGCTTCAACTCGAAGAATACTACGAGCTCGTAGCAGCG
ACGATGCTCCCTAAGCGTCTTGCAAGCACAAGCATGAAGTTATGTCTTTA
GCAGGGGTAGGCCCCGTTTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6841:3838..4207+

>mRNA_E_fasciculatus_S2_contig6841.14967.1 ID=mRNA_E_fasciculatus_S2_contig6841.14967.1|Name=mRNA_E_fasciculatus_S2_contig6841.14967.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=165bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6841:3838..4207+ (Ectocarpus fasciculatus EfasUO2)
ATGGCATGCCTCGCTCGTGCAAGGATCCGCCATGAGAGGTATAACGAGTG
TCTCTTAGTCATCGCGATGGCCGTGCTCTGCTTGTGTCTGGGACATGATG
ATCTTTTTGACGTGATGAGCTCTGTGTTGGCCTGCTTCAACTCGAAGAAT
ACTACGAGCTCGTAG
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