mRNA_E_fasciculatus_S2_contig6838.14963.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6838.14963.1
Unique NamemRNA_E_fasciculatus_S2_contig6838.14963.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY25_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 6.300e-88
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:   67 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLY 465
            MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCS+QPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAV+GDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLY
Sbjct:    1 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSSQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVTGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLY 133
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW7_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.250e-51
Identity = 96/133 (72.18%), Postives = 100/133 (75.19%), Query Frame = 1 
Query:   67 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLY 465
            MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCS+QPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAV+G                                KAVSALAFSP+G FL+
Sbjct:    1 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSSQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVTG----------------------------RKRCKAVSALAFSPEGYFLF 105
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: ROOT (INITIATION DEFECTIVE 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THY0_CHLSO)

HSP 1 Score: 124 bits (310), Expect = 5.340e-30
Identity = 62/128 (48.44%), Postives = 83/128 (64.84%), Query Frame = 1 
Query:   82 LLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQV-KGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFL 462
            LL +S+ +   TV DV TGT L+S K  +  P   +L+  D++V+AQ  +G ++HFWAW  +QP  +C A E+L  +A + DG  CA GG SG V++WE SSG LLR W AHYKAV+ LAFS  G  L
Sbjct:    8 LLVASSVESNITVWDVSTGTALTSFKSNACPPNGLSLLGRDYLVAAQAARGGSLHFWAWHKDQPHQRCFAAEQLTAVAATRDGVYCAAGGASGAVFVWETSSGRLLRTWPAHYKAVTCLAFSDSGAVL 135
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: ROOT (INITIATION DEFECTIVE 3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR27_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 7.920e-29
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:   76 VALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQV-KGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFL 462
            V L+ SSA +   T  D+ TGT L+S K C+  PG  + +  D +V+AQ+ +G  +HFWAW  +QP  +  A E L  +A S DG  CA GG SG  ++WE SSG LLR W AHYKA++ LA+S  G  L
Sbjct:    6 VLLVASSAAESNITAWDLHTGTSLTSFKSCACPPGGLSRLGRDHLVAAQLGRGGGLHFWAWHKDQPHQRSFAAEPLTAVAASPDGAFCAAGGASGAAFVWETSSGRLLRTWPAHYKAITCLAWSDSGAVL 135
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZB77_CHLVA)

HSP 1 Score: 114 bits (284), Expect = 1.190e-26
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:   82 LLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQV-KGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFL 462
            +L +S+ +G  T  DV TGT L+S K  +  PG+ + +  D++V+AQ+ +G  +HFWAW  +Q   +  APE L  +A S  G  CA GG SG  Y+WE SSG LL+AW AHYKA++ LAFS  G  L
Sbjct:    7 VLVASSTEGNITAWDVHTGTALTSFKSNACPPGALSPLGRDYLVAAQLGRGGGLHFWAWHKDQLYQRSFAPEPLTAVAASPGGVFCAAGGASGAAYVWESSSGRLLKAWPAHYKAITCLAFSGCGAVL 134
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VVB8_CHLIN)

HSP 1 Score: 112 bits (279), Expect = 5.750e-26
Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:   82 LLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAF 441
            L+ +S  DGL TV D +TG+Q+S+ K   +     A +  D++V+AQV   A+HFW+W  EQ   +  A E L  LA S DG   A GG SG +YLWEV SG L+RAW AHYKA +AL F
Sbjct:    7 LIANSNADGLITVCDPVTGSQVSAYKGNGSPRNGLATLGNDYIVAAQVHKHALHFWSWQREQVLQRSFAAEALTCLACSPDGAYLAAGGASGTLYLWEVGSGRLMRAWAAHYKAATALLF 126
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835TF61_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 1.630e-25
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:   82 LLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAF 441
            L+ +++ DGL    D +TG+Q+S+ K   +     A +  D++V+AQV   A+HFW+W  EQ   +  A E L  LA S DG   A GG SG +YLWEV SG LLRAW AHYKAV+AL F
Sbjct:    7 LIANASADGLIVACDPVTGSQVSAYKGNGSPRNGLAALGNDYIVAAQVHKHALHFWSWHREQVLQRSFAAEALTCLACSPDGAYLAAGGASGTLYLWEVGSGRLLRAWAAHYKAVTALLF 126
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CCG4_SAPPC)

HSP 1 Score: 107 bits (266), Expect = 9.400e-25
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = 1 
Query:   67 MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCS-AQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFL 462
            M +  L+  S+ DG   VVD    +QL   K  S A+ G   +     +++ Q    A+H   WG + P LKCH  E +GPL  + DG  C  GG SG++Y+W V++G LL  WD HYKAVSALA +PD  FL
Sbjct:    1 MEDQVLVLGSSKDGNVYVVDPSCSSQLFLFKGSSCARHGLAIVPRTGHLITIQPGKLALHMHMWGKDVPTLKCHVTEPMGPLIATRDGNFCIAGGASGKIYVWCVATGALLHVWDGHYKAVSALALTPDDAFL 133
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PNE5_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 1.240e-24
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:   70 REVALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDG 453
            +   LL  S G+G     D+ T TQLS  K  ++ PG    +  D+  +AQ    AVHF+A+  +Q   +  A E++  LA + DG   AGGG SG +YLW+ +SG LLRAW AHYKAVSAL FS  G
Sbjct:    3 QHAVLLACSGGEGTIVAWDLATATQLSQYKGNNSGPGCFCAVGRDYFAAAQASKDAVHFYAFHKDQVLQRSFAQERVTALAATRDGRYLAGGGASGALYLWDTASGALLRAWPAHYKAVSALRFSDCG 130
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Match: WD (repeat-containing protein 18 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRK7_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 3.140e-24
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 1 
Query:   61 VRMREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVSAQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVYLWEVSSGTLLRAWDAHYKAVSALAFSPDGCFL 462
            V + +  +L +S      T  DV TGT L++ K       +  LI  D+   AQ    ++HFW W  +Q   + +A E +  L  S +G  CAGGG SG +YLWEV SG LLR+W AHYKAV+ALAF+ DG  L
Sbjct:    2 VSIHQQVVLVASKLPSTITTWDVHTGTHLATFKDNCTSQNALCLIGRDYFAGAQHPKGSLHFWTWHKDQVLQRSYAVEPIVALVASLNGVHCAGGGQSGTIYLWEVPSGRLLRSWPAHYKAVTALAFTDDGAVL 135
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6838.14963.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.300e-8898.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.250e-5172.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
ROOT5.340e-3048.44INITIATION DEFECTIVE 3 n=1 Tax=Chlorella sorokinia... [more]
ROOT7.920e-2946.15INITIATION DEFECTIVE 3 n=1 Tax=Micractinium conduc... [more]
Uncharacterized1.190e-2646.09protein n=1 Tax=Chlorella variabilis TaxID=554065 ... [more]
Uncharacterized5.750e-2648.33protein n=1 Tax=Chlamydomonas incerta TaxID=51695 ... [more]
Uncharacterized1.630e-2547.50protein n=1 Tax=Chlamydomonas schloesseri TaxID=20... [more]
Uncharacterized9.400e-2542.11protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Uncharacterized1.240e-2444.53protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
WD3.140e-2442.54repeat-containing protein 18 n=1 Tax=Coccomyxa sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6838contigE_fasciculatus_S2_contig6838:2130..5868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score275.4
Seed ortholog evalue1.4e-71
Seed eggNOG ortholog2880.D7FY25
Preferred nameWDR18
Model size465
KEGG koko:K14829,ko:K21412
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000151,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005694,GO:0005720,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009058,GO:0009059,GO:0009799,GO:0009855,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016072,GO:0016458,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030174,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0040029,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045137,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048509,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051093,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070121,GO:0070925,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902183,GO:1902184,GO:1902299,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.rRNA processing
EggNOG OGsCOG2319@1,KOG0646@2759
Cds size399
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842340.803827-UTR-E_fasciculatus_S2_contig6838:2129..21951696842340.803827-UTR-E_fasciculatus_S2_contig6838:2129..2195Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6838 2130..2195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842340.8180554-CDS-E_fasciculatus_S2_contig6838:2195..23511696842340.8180554-CDS-E_fasciculatus_S2_contig6838:2195..2351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6838 2196..2351 +
1696842340.8285701-CDS-E_fasciculatus_S2_contig6838:3773..38701696842340.8285701-CDS-E_fasciculatus_S2_contig6838:3773..3870Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6838 3774..3870 +
1696842340.8394375-CDS-E_fasciculatus_S2_contig6838:4765..48661696842340.8394375-CDS-E_fasciculatus_S2_contig6838:4765..4866Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6838 4766..4866 +
1696842340.8509674-CDS-E_fasciculatus_S2_contig6838:5823..58681696842340.8509674-CDS-E_fasciculatus_S2_contig6838:5823..5868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6838 5824..5868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6838.14963.1prot_E_fasciculatus_S2_contig6838.14963.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6838 2196..5868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6838.14963.1

>prot_E_fasciculatus_S2_contig6838.14963.1 ID=prot_E_fasciculatus_S2_contig6838.14963.1|Name=mRNA_E_fasciculatus_S2_contig6838.14963.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp
MREVALLTSSAGDGLATVVDVLTGTQLSSLKHCSAQPGSTALIAGDFVVS
AQVKGTAVHFWAWGTEQPRLKCHAPEKLGPLAVSGDGWLCAGGGVSGRVY
LWEVSSGTLLRAWDAHYKAVSALAFSPDGCFLY
back to top

mRNA from alignment at E_fasciculatus_S2_contig6838:2130..5868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6838.14963.1 ID=mRNA_E_fasciculatus_S2_contig6838.14963.1|Name=mRNA_E_fasciculatus_S2_contig6838.14963.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3739bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6838:2130..5868+ (Ectocarpus fasciculatus EfasUO2)
TGCCGTAGCGGGTGAGTGGTTCGCCTTTCCCAACCCCGACACGCAGGCTG
CCGTGCACGCGTAAGGATGCGGGAGGTTGCGCTATTGACTTCGTCGGCGG
GAGATGGGCTGGCCACTGTGGTCGACGTACTCACGGGCACGCAGCTCTCG
AGCCTCAAGCACTGCTCCGCGCAGCCTGGCTCCACGGCCTTGATCGCTGG
AGACTTCGTCGTCAGCGCACAGGTAAGAAAGAGACGGGTGTGCACATCAC
AAAGGCTGGGAATTCGGAAAACACCCTGCCTGTGTGAATGCTATGTTGCC
TTTTCGGCGGATACACGCTTGGTCGTGAACTCACCACTTACGACAGGCCT
GGACGGCGGACCCTTTGTGTAGATGACAGAGATCGATGAGGAGACAACAG
GTGGAGATCATGTGTGTGTGTGGATGCATCGCTTGCGTCTACAGCACCAT
GTACAACATGTACAGGCAGTAGTAGTCTTCGCGCACCACCGAAAGCTCTG
CATGCTCTCTAGACACCGGTAGGTTTCCTTGTATTGTACATAGCTATGTA
TGTCGTGTGGTACGGCGGTAGTTGCCCTGTGACATCACAAATTTCGATTG
TTCCTGTCGTCGATTTGAATTACGCGTGGTGCCGCCACCGAGTACATACA
ACGCTTGAAGCACCCCAACTACGTGTACCGGTACGCCGACTCTACAATAC
TGCTGTATCCATTCTATTTGCGTACTCGGAAAACCCTCCGTGGACAATGA
AAAGCAACAGCAGTTTACATCGTCAGACGAGAGGAATCAGAAGCTGGCAG
TCGTAGGCATGGTTGTACATTGTCAGGCGAAAGGGATCAGAGGCTGGCAG
CAGCCGTGACGGCATGGCTGTGTTGCTGTGGTTGTTGTTGTTGTTGTTTT
TCTGGTTTTTCTCACATTAACTTGTAGTCCAATCTACTACTCCGGAGTAT
ATTGTATGAGGATCCCGTGGTCGCAAAACGCGGCACACACGACACCGCGA
AAGAAACAAGCCAAAACCACGGAGTTGTAGCCCACTGCTGTATGCTTACA
AGTGGAAACACCATAGAGTAAAACACTGCTGCTGCTGTGGAGAGTCAGCT
CGATGCGTAGTACAGCAGTAGTGGTATTTCACATCCTTCCCCGAGACGTG
TACAGGTACCACCTTGCAGGCCGACTAACGTATGCAGAGGTGGTTGCCGT
GTGCGATAGGTCGGCGTTTGAAGATCGATTGCTCCACAACCAACATCGAG
GGTGCGAAGAAATCCGACCGGCACTTGCAAGGAGAAGCTCTACTCCCCCT
CTCGACGAGAGATCGTTCCAAAACCAAACCGCCCGTTTCGGCCTTGGTGC
ACCTCGGTGGTGGGGCAGTGGAAATTTTAGACAGATTTGTACACCTGCGG
TGCGCACCCACTGTCTGTTTCGGTAGATACTTCGTGTTGGTTCCCAAACA
CCGAGCCTACTTGAACGTGCTGGAAGTTCACGCCCCCCAAGACATGGGGC
TGAGCGGCCACTTCAACTTCGTTTGACGTGCAAGCAATGGTTGGGATCTG
CTCTTGGTTATGAATTATGAAGCGCTTGTCCCTACCGTTCACGAACTTGA
ATTTATTTTTCCACCCGATTTGCGCGATGCCTTTCGTGAGCCAGGTCAAG
GGAACCGCGGTGCACTTCTGGGCCTGGGGAACCGAACAGCCGAGGCTCAA
GTGTCACGCTCCGGAGAAGCTCGGTCCCCTTGCCGTGTCCGGTGAGTCGC
GGGACCCTGCCGCGATACGGGCAGTAAGCGTCGTCTCGATCCAGCTCTTT
CCCCTGCTCGCCCGCTGGCCCTTGTTGGTGTCCGCCCGGAAGTCGATCAT
GACCGCCTGTTCGATCAGGATTTGGGGGGACAATTTCATAAAAAAGCGCA
TAAAATCGAGCAAGACTAAGTCACCAGTAAAAGAGACTAGTCGAGGGGCG
CGTGTTCAAGTCTTTGCAGTGAGTGGGATAAAAACCGGATTATTCGTACA
AGTTTCCCGCTGTGAAGAGTAGTACGATATTGCCTCTCGAACCCGCGGCC
TCCCGCAGCCCCAGCTGTACACAATGCGGAACACGTGTGGGACGAACATG
TTGTAGGTGTACGGAAGCTTTAGTTCGTAGACTTACCTTCACAGATCTTG
ACCTTGGCGACGTAACGTCGGACTCATCTCATTGCGCCGCAACTACGTCC
TTTTGTGTACGTGCCCGGGTTTTTCTCTGGGATGGTTTGTTGATAGGAGA
CAGGAGTAGGGCGGGTGCGCTCTAGCGCTCTTCGTTTCCCCGTGTATAGC
TCGCGTTTACCACGCTTGTCTTGTTTGTTGTATGCACGAAAATGGTTCCT
TGCCAAGCCGTGCTCTGCACCTCCGGCCGTTTTCACCGTGTACGCCACGA
CCCACGTCGGCGAGCGCTGCGGCCCATGACCCCGGTGTTGTTCCCTGACG
ATGCGATCATGTAGTGCCGCTGATTGCTTGGCACGGCTGTGCTCAACTTA
TCGAGACTTGTTGACGTTGGCAATTATTCAGATCTCGCCCGGTACAGCAC
CGGGAAGTGTTTTGCTTTGTGTCGTATGCATGCTTTCTAACAATGAACCA
TGCGGTCTTATATCCTTGTCTTGTGTGTACGGGCAGGGGACGGGTGGCTG
TGTGCGGGCGGGGGAGTCTCGGGACGCGTCTACCTGTGGGAGGTGTCCAG
CGGGACTCTCCTTCGCGCGTGGGACGCCCACTACAAGGCAAGCGCTTGTC
ATATAGAACACGCCCGTGTCGATGCCTCTGTCTTCGGTCTACCAGTGTAG
TGCCAATGATGCCCAGGTGTGACCCGAAAGCGACTACTGTGTACAAGTAA
CGGGTGGAGGCAAGGCCGGGGGTAGGAGGGGCAGGGGAGGCCCACCGATT
GTGCTGTTTTTGGCTCCTGCTCTGAATGGCTTTTCTGTGGTTTTTGTTCT
ACCTCGAAACTCTCGTCGCCTGTGATGCCGGGGTGAAAGAAGTTGTAAGG
CACGGCTTTTACGCCAAGGCCCCTCAAAAGTAGTGCAGTACTTGCGGCCA
AGGTTTTCGTGTTGTCGTCCAAACACGTGCCGAGAGGCTGAAACCCCTGC
TAAAACCCGCGCATTGTTATTGTTCTGGGTACGCGATGCAAGGCCTCTGC
TGTACCGGAAGTAGGACAACTGGCTTGTTTGGGGTTACTCCTATAAATGT
CGTTCACGTGTGTGTGTGTATCCGACAGGCAGAGAGCAAGCAGTTGTTTC
AGAAAAAGCAGCATAGTGTTGCGAGGTCAATGGCCTAACGACTACGGCAT
GCACAACTATGAGTACAACCCCCCCGCCCCATCGCCGAGTCTACATACAC
GGCCGACCTTACAGACATTTTCAGCCGTGGACCTTCCCGGTACAATATCG
AAAAAATATAAGAATGTGCTGCTGTCTAGGCAGCAGTGGGCGGGCCGGGG
GCGGGACCAACCCCCACCCTCCGTGCATTGTCCTCGACCATTGCTGTGTG
TGCTGGATGTACCCCATTGAGCGCCTGGTGCTACTGCGCACACCGCACCT
TTTCTACACCTCCCACACCTTTCCGTCCTCTCGAGGACGCGTGGTATTAC
GACTACGGCGTGCAAAAGCATGAATACGCCCCTTGTCGTGCCCATGCGCT
CTCCTTTGACGCGATTGCTCTGTATGTTCGACGACATGCCTCAGGCGGTG
TCGGCGCTGGCGTTCAGCCCCGACGGCTGCTTCCTCTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6838:2130..5868+

>mRNA_E_fasciculatus_S2_contig6838.14963.1 ID=mRNA_E_fasciculatus_S2_contig6838.14963.1|Name=mRNA_E_fasciculatus_S2_contig6838.14963.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6838:2130..5868+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGGAGGTTGCGCTATTGACTTCGTCGGCGGGAGATGGGCTGGCCAC
TGTGGTCGACGTACTCACGGGCACGCAGCTCTCGAGCCTCAAGCACTGCT
CCGCGCAGCCTGGCTCCACGGCCTTGATCGCTGGAGACTTCGTCGTCAGC
GCACAGGTCAAGGGAACCGCGGTGCACTTCTGGGCCTGGGGAACCGAACA
GCCGAGGCTCAAGTGTCACGCTCCGGAGAAGCTCGGTCCCCTTGCCGTGT
CCGGGGACGGGTGGCTGTGTGCGGGCGGGGGAGTCTCGGGACGCGTCTAC
CTGTGGGAGGTGTCCAGCGGGACTCTCCTTCGCGCGTGGGACGCCCACTA
CAAGGCGGTGTCGGCGCTGGCGTTCAGCCCCGACGGCTGCTTCCTCTAC
back to top