mRNA_E_fasciculatus_S2_contig6837.14962.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN8_ECTSI) HSP 1 Score: 322 bits (826), Expect = 1.450e-108 Identity = 172/190 (90.53%), Postives = 176/190 (92.63%), Query Frame = 1
Query: 1 MAIGGETFEARKISVVSPNGGGGGXXEAMXXXRLPVVGANCAGGGVTNHADAEQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKSA 570
MAIGGE FEARKISVVS NGG G EAM RLPVVGA+C GGVTN AD EQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMS+AVGALRKDSGF RAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRK++
Sbjct: 1 MAIGGEAFEARKISVVSSNGGSG-AAEAMEEERLPVVGADCGVGGVTNQADVEQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSQAVGALRKDSGFFRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKAS 189
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Protein (phosphatase 4 core regulatory subunit R2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH9_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.560e-33 Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 217 IPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLP 549
IP ELE VL E+A GVPYY W GL+ELL A++ + G+ GG+ + QR+ +LV +LR FD APFTLQRLAEVL +P RQY THKL+N L+++LSVSSTLP
Sbjct: 1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP 111
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAA0_GLOUD) HSP 1 Score: 89.7 bits (221), Expect = 1.320e-18 Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 148 ADAEQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYP-------QRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKSA 570
A+ E+ LA FA + +S I P LE VL EI A GVPYY W LK LL A++ A+ + G P +RR + L FD PFTLQRL EV+ +P + Y T +KLIN LE+LL+VS+T+ ++A
Sbjct: 12 AENEKELAGFASGSVTS------ISPALERVLEEIRATGVPYYQWAHLKPLLVAKLQAAMDQVAAADTNAPTVGVGWSPTNKNSASERRATITELLNTFDGPPFTLQRLTEVIMEPLKSYKTLNKLINALEKLLAVSTTIQVVDPRAA 153
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4J3_PYTOL) HSP 1 Score: 87.8 bits (216), Expect = 7.590e-18 Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 157 EQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRK--DSGFLRAAGG----KDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTS 555
E+ LA FA A ++ I P L VL EI GVPYY W L+ LL AR+ A+ + SG + + Y +RR ++ L FD PFTLQRL EV+ +P + Y +KL N LE+LLSV+ST+P +
Sbjct: 12 EKELAAFASAENAA------ISPVLTRVLEEIRQTGVPYYQWPHLRALLVARLKVALDETQAADKSGAVTVGWSPTNKEKYEERRQQVAEQLTAFDGPPFTLQRLTEVILEPHKSYKNLNKLFNALEKLLSVTSTIPVA 144
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BB95_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.830e-16 Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 214 KIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAG--GKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRK 564
++ P L +L + GVP Y W LK L++ ++++V RK+ G + +RD LV+SL FD APFTLQRL E++ P Y++T KL+ GLE+L+SVS+TL ++ +
Sbjct: 19 EVTPLLRSILETMRKYGVPQYEWSELKPLVSQALTQSVNEFRKNHQNTDPEDKPGHSFEDQRDRLVSSLNVFDGAPFTLQRLCELILFPEEHYNSTKKLLFGLEKLVSVSTTLEVATEE 137
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T3U4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 5.400e-16 Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 157 EQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKSA 570
EQ LA FA + +S I P LE VL E+ GVP Y W LK LL A++ A+ + D+ RR + L+ F++ PFTLQRL E++ +P+R Y KL+N LE+LL+VSST+ ++A
Sbjct: 14 EQELAGFASGSVTS------ISPALEQVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDEMDADAAS---------KSRRASVTQLLQTFESPPFTLQRLTEIILEPQRSYRILPKLLNALEKLLAVSSTIQVVDPRTA 136
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGH8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.580e-16 Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 148 ADAEQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYP-------QRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTL 546
A+ E+ LA FA A ++ I P LE VL E+ GVP Y W L+ LL A++ A+ + A P +RR+ + L F+ PFTLQRL EVL +P++ Y T +KLIN LE+LL+VS+T+
Sbjct: 8 AENEKELAGFASGANTT------ITPVLERVLEEVRITGVPRYAWPQLRALLVAQLQRAMDQVAATDATAATAFVGWSPTNKNRANERRNNITELLTSFEGPPFTLQRLTEVLVEPKKSYKTLNKLINALEKLLAVSTTI 141
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IKB3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.160e-15 Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 157 EQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKSA 570
E+ LA FA + I P LE VL E+ GVP Y W LK LL A++ A+ + D+G RR + L+ F+ PFTLQRL E++ +P R Y + KL+N LE+LL+VSST+ ++A
Sbjct: 9 EEELAGFASGTVTC------ISPALERVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDQMDGDAGS---------KSRRASVTQLLQTFEGPPFTLQRLTEIILEPHRSYRSLPKLLNALEKLLAVSSTIQVVDPRTA 131
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E8I6_VITBC) HSP 1 Score: 82.0 bits (201), Expect = 1.010e-14 Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 217 IPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTS 555
IP +LE V+R+IA GV Y W LK +LAA++ + + ++ G+ + D +V +L+ F PFT+QRL E+L DPR+ Y++T KL ER+L V S +PT+
Sbjct: 33 IPEDLEAVIRQIANNGVIRYPWELLKHVLAAKIRQVLMEYHTKKPDVKLHQGESFTSHVDAIVKALQDFTGPPFTIQRLCELLSDPRKSYTSTKKLTYAFERMLKVISIIPTA 145
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKP3_PHYRM) HSP 1 Score: 78.2 bits (191), Expect = 1.150e-14 Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 157 EQALARFAQAAASSPTNPPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSEAVGALRKDSGFLRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLPTSSRKSA 570
E+ LA FA + + I P LE VL E+ GVP Y W LK LL A++ A+ + S RR + L+ F++ PFTLQRL E++ +P R Y + KL+N LE+LL+VSST+ ++A
Sbjct: 14 EEELASFAAGSVTC------ISPTLERVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDQMDSPS---------TSKSRRASVTQLLQTFESPPFTLQRLTEIILEPERSYRSLPKLLNALEKLLAVSSTIQVVDPRTA 136 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6837.14962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6837.14962.1 >prot_E_fasciculatus_S2_contig6837.14962.1 ID=prot_E_fasciculatus_S2_contig6837.14962.1|Name=mRNA_E_fasciculatus_S2_contig6837.14962.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=222bp MAIGGETFEARKISVVSPNGGGGGGGEAMEEERLPVVGANCAGGGVTNHAback to top mRNA from alignment at E_fasciculatus_S2_contig6837:4804..7946+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig6837.14962.1 ID=mRNA_E_fasciculatus_S2_contig6837.14962.1|Name=mRNA_E_fasciculatus_S2_contig6837.14962.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3143bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6837:4804..7946+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6837:4804..7946+ >mRNA_E_fasciculatus_S2_contig6837.14962.1 ID=mRNA_E_fasciculatus_S2_contig6837.14962.1|Name=mRNA_E_fasciculatus_S2_contig6837.14962.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=666bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6837:4804..7946+ (Ectocarpus fasciculatus EfasUO2)back to top |