mRNA_E_fasciculatus_S2_contig683.14955.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig683.14955.1
Unique NamemRNA_E_fasciculatus_S2_contig683.14955.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 1.370e-182
Identity = 287/307 (93.49%), Postives = 290/307 (94.46%), Query Frame = 3 
Query:    3 MPKGSDPLAGVEGVNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRR-------------FARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRVVSDDEDDNDSE 884
            MPKGSDPLAGVEGVNVRDAFSAT+SFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAG STGGGDVYRKLAAQVF KEE GVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRR             FARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGI+CPLTVNMLVGMSWGSMRRVVS DEDD+DSE
Sbjct:  913 MPKGSDPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVVSHDEDDDDSE 1219
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL3_9PHAE)

HSP 1 Score: 510 bits (1313), Expect = 4.490e-177
Identity = 258/266 (96.99%), Postives = 261/266 (98.12%), Query Frame = 3 
Query:   87 MAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRVVSDDEDDNDSE 884
            MAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAG  TGGGDVYRKLAAQVFGKEEQ VSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRS LDEGLDCPRLIMQIHDELVLECPACEEDLE+LKGLLADCMEVEAPAVLGI+CPLTVNMLVGMSWGSMRRVVS DEDD+DSE
Sbjct:    1 MAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGAGTGGGDVYRKLAAQVFGKEEQSVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSRLDEGLDCPRLIMQIHDELVLECPACEEDLEKLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVVSHDEDDDDSE 266
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VQU8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.130e-56
Identity = 117/278 (42.09%), Postives = 172/278 (61.87%), Query Frame = 3 
Query:   21 PLAGVEGVNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLD----CPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSM 842
            P  GV GVN RDAF+A+    L+ ADY Q E+R+LA    D  L N+F +              D+Y+++A+    K  + VSDEER   K V L + YGMG PQVAKKL ++ S AQ  + +F + F G+  ++ AT+ FAR + +V T++GRRR+L +I  S +   +AQAERQAVN+++QG+AADIMK AM+ ++ R+  W+ +  EGLD     PR+++QIHDEL+ E  A E D++RL+  +  C   E      ++  LT+ + +G+SWGSM
Sbjct:  219 PTDGVLGVNPRDAFTASPHKCLVTADYCQKEIRILAHMANDDTLLNMFRSKEEV----------DIYKQMASACCNKPVEKVSDEERRIYKQVTLAVLYGMGVPQVAKKLSVSRSTAQNFLNTFFRRFQGVSRWIEATKDFARRHQFVTTISGRRRYLDDIC-SGDKGKRAQAERQAVNTIIQGSAADIMKLAMLKMSARIMDWKKA--EGLDSLGSAPRILLQIHDELLFETDANESDVKRLRDAIMRCCADECVREFDLKVQLTMTLRIGISWGSM 483
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU15_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.410e-53
Identity = 115/275 (41.82%), Postives = 165/275 (60.00%), Query Frame = 3 
Query:   21 PLAGVEGVNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDA-WRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSM 842
            P      +NVR+AF A++  TL+A DYSQIEMRVLA    D  LR LF           S  GGD+Y+++AA++  K    VS EERN AK  CLGI YGMG  ++AK+  I++++A+   +SF + F G+  +    +     +G+V T+T RRR +     + +   +A+AERQAVNS +QG+A+D+MK AMV + R+L A W+   D  L  PR+I+Q+HDEL+ + PA  E ++ LK L+  CM       L +  PL V M VG +WG+M
Sbjct:  109 PPRAAATLNVREAFVASRGRTLLAVDYSQIEMRVLAQLSEDQRLRALF-----------SQPGGDIYKQVAAKLTQKHVDQVSTEERNLAKSSCLGIIYGMGDKELAKRHGISQAKAESFKQSFFREFQGVGAWRNRIKAQVHTDGFVSTVTRRRREVKTCGPN-DWQGRARAERQAVNSTIQGSASDMMKLAMVAIHRQLPAAWK---DLKLPPPRMILQVHDELIFDVPATLEAVQTLKSLVRSCMVAHVSQQLQLNVPLDVKMCVGTTWGTM 368
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN94_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.830e-52
Identity = 122/281 (43.42%), Postives = 166/281 (59.07%), Query Frame = 3 
Query:   21 PLAGVEGVNVRDAFSATKSFT-LMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDE--GLD-CPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRV 851
            P  G  GVN RD F AT S   L A DYSQ E+R+LA    D  L ++F              G D+Y+++++ + G     VSD+ER   K V L I YGMG PQVAKKL +T S AQ    SF + F G+  +M  T+ FAR+N +V T+ GRRR+L +IN S + A KAQAERQAVN+++QG+AAD++K AM+  A RL  W   + E  G +  PRL++QIHDEL+ E  A E D+ +LK ++  C   E      ++ PL++    G+SWG M  V
Sbjct:  857 PNVGAFGVNPRDGFVATSSEKCLFACDYSQNEIRILAHMSGDQTLISMFRE-----------DGVDIYKQMSSAITGMPVDEVSDKERKIYKQVTLAILYGMGVPQVAKKLSVTRSTAQNFFTSFYRRFHGVRQWMEQTKDFARQNCFVTTIAGRRRYLDDIN-STDTAKKAQAERQAVNTIIQGSAADLIKLAMLKTASRLMDWHKEVIEAGGTNIAPRLLLQIHDELLFEVMANETDVSKLKDIVTQCCGEECVEEFKLKVPLSLKCTCGISWGLMNEV 1125
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BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8E1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.170e-48
Identity = 113/281 (40.21%), Postives = 166/281 (59.07%), Query Frame = 3 
Query:   21 PLAGVEGVNVRDAFSAT-KSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLD---EGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRV 851
            P   V GV  R AF+ + K   L A DYSQ E+R+LA    D  L NLF T  GT+D         VY+++++ + GK    V+D+ER+ AK + L I YGMG   VAK+L + +  A+   RSF   FP ++ +M  T   AR N YV T++GRRR+L  I N  + A ++QAERQA+N+++QG+AAD+MK AM+ +A R+  WR       E    PR+++QIHDEL+ E  A + D++RL+ ++  C   E      ++ PL +   +G SWGSM+ +
Sbjct: 1108 PTGSVLGVCPRSAFTTSAKDSCLFACDYSQKEVRILAHMSGDANLMNLF-TQPGTDD---------VYKQMSSVISGKRSNEVTDKERSIAKQLTLAIMYGMGINSVAKQLGVNKESAKSFFRSFYGRFPDVKRWMDQTISSARTNKYVTTISGRRRYLDNITNE-DRALRSQAERQAINTIIQGSAADLMKLAMLKMASRITDWRKERTGNGESNTPPRMLLQIHDELLFEIVANQADVDRLRSVVTRCCTEECVEEFRLKVPLKLKCSIGTSWGSMKEL 1377
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BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RVS4_9CRUS)

HSP 1 Score: 191 bits (484), Expect = 8.710e-48
Identity = 114/273 (41.76%), Postives = 164/273 (60.07%), Query Frame = 3 
Query:   24 LAGVEGVNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSM 842
            L+  + +NVR AF A    TL++ADYSQ+E+R+LA    D GL ++            S   GDV+R + +    K+++ VSD+ER +AK +C GI YGMG   +A++LE++E +AQ  V SF   +P IE F+  T    R  G+V TL GRRR LP IN S NA+ +AQAERQAVN+ +QG+AAD++KTA++L+         SL+E L    L+ QIHDEL+ + P     +ER   ++  CME   P  L I  P+ +   +G +WG+M
Sbjct: 1527 LSDGQMINVRTAFHAVPGTTLLSADYSQLELRILAHLSEDTGLCSVL-----------SKPNGDVFRGIVSVWKKKKQEQVSDDERQQAKQICYGIVYGMGCKTLAEQLEVSEEEAQVFVDSFHSTYPNIEKFITNTISTCRSKGFVMTLLGRRRFLPSIN-SNNASQRAQAERQAVNTKIQGSAADLVKTAVILL-------NHSLNEKLTDVHLVHQIHDELLFQIPT--NSIERAARIVRHCMETAIP--LKIRLPVAIK--IGKTWGTM 1774
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVN7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.110e-47
Identity = 100/273 (36.63%), Postives = 162/273 (59.34%), Query Frame = 3 
Query:   51 RDAF--SATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDC----PRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRV 851
            RDAF  SA +   + A DYSQ E+R+LA    D  L +LF   G  N         D+Y+++A+ +  K  + ++ EER + K V L + YGM   QVAKKL I++S AQ  +  F + F  ++ +M  T++ AR NGYV T+ GRRR+L +I +  N   ++QAERQA+N+V+QG+AAD+MKTAM+ ++  L +W+     G       P++++QIHDE++LE    E D+++++ +       +   +  ++ PL +    G+S+GSM+ +
Sbjct:    1 RDAFVPSAREGMCVFACDYSQKEVRILAHMSNDEALISLFR--GDVNT--------DIYKQMASLIRNKPAESITPEERAQFKQVTLALLYGMSPNQVAKKLSISKSAAQQTMNDFFRRFRRVKSWMEETKQLARRNGYVLTIAGRRRYLNDIRSEDNGK-RSQAERQAINTVIQGSAADLMKTAMIQLSENLQSWQEGTSTGELAMNARPQMVLQIHDEVLLELSFNERDIKKMQAIAVKSCCRDCEELFNLKVPLLLKCSCGLSFGSMKEI 262
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA (polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4R5_THAPS)

HSP 1 Score: 183 bits (465), Expect = 1.330e-47
Identity = 108/276 (39.13%), Postives = 164/276 (59.42%), Query Frame = 3 
Query:   36 EGVNVRDAFSATKSFT--LMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWR--SSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRV 851
            +G +VR +F  +K  T  L A DYSQ E+R+LA    D  L +LF       DA       D+Y+++++ +  K  + ++ +ER + K V L + YGM   QVAKKL IT+SQA  ++  F + F G++ +M  T+ FAR N YV T+ GRRR+L  I++  N A KAQAERQA+N+V+QG+AAD+MK +M+ +A  L  W+  +S +     PR+++QIHDELVLE    E D+ RL+ +    +  +      ++ PL +    GMSW  M+ +
Sbjct:  236 DGASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKALISLFQM-----DANV-----DIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAKKLNITKSQAIQMMNDFFRRFQGVKNWMEDTKEFARRNHYVVTIAGRRRYLDGIDSDDNGA-KAQAERQAINTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDELVLELNFVETDIRRLQAIATKSLTRDCEEYFHLKVPLLLTCSCGMSWHGMKAI 500
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Match: DNA-directed (DNA polymerase n=4 Tax=Daphnia TaxID=6668 RepID=E9G1T5_DAPPU)

HSP 1 Score: 190 bits (482), Expect = 1.580e-47
Identity = 113/267 (42.32%), Postives = 160/267 (59.93%), Query Frame = 3 
Query:   42 VNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIECPLTVNMLVGMSWGSM 842
            +NVR AF A    TL++ADYSQ+E+R+LA    D GL ++            S   GDV+R + +    K+++ V+D+ER +AK +C GI YGMG   +A++LE++E +AQ  V SF   +P I+ F+  T    R  G+V TL GRRR LP IN S NAA +AQAERQAVN+ +QG+AAD++KTA++L+ R       SL E L    L+ QIHDEL+ E P     +ER   ++  CME   P  + I  P+ +    G +WG+M
Sbjct: 1536 INVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSIL-----------SKPNGDVFRGIVSVWKKKKQEDVTDDERQQAKQICYGIVYGMGCKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRSKGFVITLLGRRRFLPSIN-SNNAAQRAQAERQAVNTKIQGSAADLVKTAVILLNR-------SLKEKLSDVHLVHQIHDELLFEIPT--NCVERAARVVRHCMETAIP--MKIRIPVAIK--TGKTWGTM 1777
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig683.14955.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA-directed1.370e-18293.49DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
DNA-directed4.490e-17796.99DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
Hypothetical1.130e-5642.09protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
DNA-directed1.410e-5341.82DNA polymerase n=1 Tax=Rhizochromulina marina TaxI... [more]
Hypothetical1.830e-5243.42protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
DNA-directed3.170e-4840.21DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=1... [more]
DNA-directed8.710e-4841.76DNA polymerase n=1 Tax=Daphnia galeata TaxID=27404... [more]
Hypothetical1.110e-4736.63protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
DNA1.330e-4739.13polymerase (Fragment) n=1 Tax=Thalassiosira pseudo... [more]
DNA-directed1.580e-4742.32DNA polymerase n=4 Tax=Daphnia TaxID=6668 RepID=E9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig683contigE_fasciculatus_S2_contig683:20165..26970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score557.0
Seed ortholog evalue5.3e-156
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
Model size1769
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
Cds size885
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig683.14955.1prot_E_fasciculatus_S2_contig683.14955.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig683 20167..26088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842340.0755384-UTR-E_fasciculatus_S2_contig683:20164..201661696842340.0755384-UTR-E_fasciculatus_S2_contig683:20164..20166Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig683 20165..20166 +
1696842340.2139425-UTR-E_fasciculatus_S2_contig683:26088..269701696842340.2139425-UTR-E_fasciculatus_S2_contig683:26088..26970Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig683 26089..26970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842340.0897563-CDS-E_fasciculatus_S2_contig683:20166..202771696842340.0897563-CDS-E_fasciculatus_S2_contig683:20166..20277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 20167..20277 +
1696842340.1005723-CDS-E_fasciculatus_S2_contig683:20438..205641696842340.1005723-CDS-E_fasciculatus_S2_contig683:20438..20564Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 20439..20564 +
1696842340.11452-CDS-E_fasciculatus_S2_contig683:21417..214961696842340.11452-CDS-E_fasciculatus_S2_contig683:21417..21496Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 21418..21496 +
1696842340.1274676-CDS-E_fasciculatus_S2_contig683:22307..223571696842340.1274676-CDS-E_fasciculatus_S2_contig683:22307..22357Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 22308..22357 +
1696842340.149285-CDS-E_fasciculatus_S2_contig683:23244..233151696842340.149285-CDS-E_fasciculatus_S2_contig683:23244..23315Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 23245..23315 +
1696842340.1594012-CDS-E_fasciculatus_S2_contig683:23547..236771696842340.1594012-CDS-E_fasciculatus_S2_contig683:23547..23677Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 23548..23677 +
1696842340.1702416-CDS-E_fasciculatus_S2_contig683:24116..242271696842340.1702416-CDS-E_fasciculatus_S2_contig683:24116..24227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 24117..24227 +
1696842340.1902626-CDS-E_fasciculatus_S2_contig683:25261..253211696842340.1902626-CDS-E_fasciculatus_S2_contig683:25261..25321Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 25262..25321 +
1696842340.2032323-CDS-E_fasciculatus_S2_contig683:25941..260881696842340.2032323-CDS-E_fasciculatus_S2_contig683:25941..26088Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 25942..26088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig683.14955.1

>prot_E_fasciculatus_S2_contig683.14955.1 ID=prot_E_fasciculatus_S2_contig683.14955.1|Name=mRNA_E_fasciculatus_S2_contig683.14955.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=295bp
MPKGSDPLAGVEGVNVRDAFSATKSFTLMAADYSQIEMRVLADACRDPGL
RNLFATLGGTNDAGPSTGGGDVYRKLAAQVFGKEEQGVSDEERNRAKVVC
LGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRFARE
NGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAM
VLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLA
DCMEVEAPAVLGIECPLTVNMLVGMSWGSMRRVVSDDEDDNDSE*
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mRNA from alignment at E_fasciculatus_S2_contig683:20165..26970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig683.14955.1 ID=mRNA_E_fasciculatus_S2_contig683.14955.1|Name=mRNA_E_fasciculatus_S2_contig683.14955.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6806bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:20165..26970+ (Ectocarpus fasciculatus EfasUO2)
AGATGCCTAAGGGCAGCGATCCACTCGCCGGAGTAGAGGGAGTGAACGTG
AGGGACGCGTTTTCGGCGACGAAGTCGTTCACGCTCATGGCCGCCGACTA
CAGCCAAATAGAGGTGCGTGCGCGCCCTCTCTTACCGGTTCAGCGATCGT
CGGGCCGGGCGATGTGGTTGATCGTAACCAATTTGCTCGTCACATCCCTG
CAGTTCTTCCTCTCTTGTCCTCATGAGAACTCGTCTTCATGCTAGCCCCC
CCCAAAAAAATGCTACCAAACAAGATGAGGGTGCTCGCCGACGCTTGCCG
AGACCCTGGGTTGAGGAACCTCTTCGCCACTCTCGGGGGCACGAACGACG
CGGGTCCTAGCACTGGCGGAGGGGACGTGTACAGGAAACTGGCTGCGCAG
GTGCGCGGAGCGTATTCCACTGGTGCTTGTAGTTTGGCGCTTGTCACCCC
CCCCCCCCTCTCTCTCGTTCGTAGCCATGCAGCGCGTTTTTAGGCATGTT
GGATCACACTGCTGTACACCCGTGTATTGCTTTTGTAATGCAGGTGTGGG
GTTGTTGGGTTGGGGTCGTTTGACGAACAGGACGGGATATTTGTTCTATG
AACGTGAGGTGGACAATCGCCCAGGTGCATCTCTGAATTATGCAATGTCA
CACTCGACGAACCCCTCGTTTCCGGTGGATGCACATGATTTCTGAGAATG
ACATTTTGACACCAAGGGAGAATCACAAGTGACACGCATGTTATAACATG
TCAAAGGGAACCTGGGTAAGTGGTCAGTTTCTAAAACGTGAGCGTTTGCC
GTTTCCCATATCTACGGCACGTAAAAACAAGGCTTGCGAGCAGTGTCTGG
TGTGCGCGAGTCCATCATCTCGGACCACATAATAGGCCATTTTTTGTTCG
AATGTCTGGTGAACGTGGGCGGAACTTCACACCGATTACAAAAGGGTCTG
TGGGAGAGGGGCATTGGCTGCATAACCCCGGATCACAGTGACTCTGGCCA
AAGGGAGAATGTGGATAACTAAATGAGGCAAGGAAAAAGAGTTTGGAAAT
GTGAAGTGGGGAGCTGGGCGAAGAACAAAAGACCAGACTCGAGCGCACAG
AGATTGTCTACAACGCTATCTACAACGCTAGCTAGCCCTCTTTGCCTCTT
TCTTAGGCTGGAAGGAATACAGCGTGCCTGTGATGAGTTTGACGAATGTG
ATGAACTACAGGAGGATGAGTTCTGCGTAAACGTCATGACACAACGTTCC
TAGGTGTTCGGCAAGGAGGAACAAGGCGTCAGCGACGAAGAGCGGAATCG
CGCCAAGGTCGTTTGCCTGGGAATCACCTACGGTACGCGATTTTTCAATT
GTGTTGACGACGATTGCTTCTAAACTTTCCGCGCACAGAAAAATTATTTC
ATGTTGTTCGATCGTGTAAAGATTTTTGTGGTAGTGCTCTCGCCCGCTCG
CCCGGCTGTATCTTTACGCGGGCCCGCCGGGAGGGATAATGTGAAGTGGA
TTCGGTGTCGAATTCCGGGCGTGTTTATCGTTGTGTCAGAAGTATGTAGT
ACTACGCAGCTACTAATTAGACACTAGGGGCATCTGTGTTGGGTGCCATT
GTCCGTTGTCCTTTTTGTTCGCTGTCCAAGAGAACGCTTCTCCCGCTTCT
CCTTCGGTACTGTGTTTCGTTCTTGTCCTGCGGTTGTATACCCTCCGTAC
CATGCCATGCCCGACCAGCAACAAGAGTCAATCCGGAAGCAGGCGGAAAT
GTTTCCTAATATAGTTGAGCGTCCTCGCCGAGGTTTTCTAGCGAATCTGG
TTCTTCCCCCGTTCTCTCCTTGCACGGCGTGCGTGGCCTGTCGATATACT
GCGGACACGCCTCGAGACCCCTTCTGTGTACCTAGTGACGGCGCCATCGA
TCGCATGGACCATCCGACGTTGCTACGATACGCACGGCCAAACAAAGTTT
ACTTGCCTGCTCCTCTCTGCCATTGCAGTGTAGACTCCTTTACATACCCG
TTCGTAGCTGTTATCGGCACCTCCCACGGCTCGGGAATTGAAGTATTGGT
CGCGCTCTCGAGTATCAGGCGTCTTCATTACTACATCGTGAAGTTGATGC
CACCCCAGTGCATTCGCTAAAGGTTTCTCTTGAAACATGGCAGGTATGGG
AACCCCGCAAGTGGCGAAAAAACTAGAGATCACCGAGAGTCAGGTGGGTG
CCTGCGCCTGCCCTCTGTGGCCGTTTCAAGTATGGGCTTCCTGTGTTGCA
CATGCACGAGGCCGACACCTAGATGGACTGTTCTTGGTGCCGTTCTTGGT
ACTCAGTCATGAGTTGTGCTAAACGCGAAACGCCGCACCCCAGTGTCGCA
GCGAAAAGAAACATGGTGTCTGGCCCCAAAAGAACAGCAACATGGTCATC
TGCATCACCCCACGGCGGTATAGATGGCGTGGACTGTCTGATCATTGTCA
CAACATGATTATCTTCCTGCAGACACCAGAACGCAATGATCCAAACGACC
TAGCTCAGTGGATGCTGCTGTGACTATTTTACGTCAGGGTGGGGACGGCG
GATTTGGCCGGGACCCTGTTAAACTACGCCCTTGTGGCAATAACCCGCTG
TAGAATAGGCATGCGCAGTGTTTCGATTGAAAATGACGTATGGAAGTGAG
TGGTGAAGCGCCTTGTAGTGAGTACTTGGACTGGCTTGTATGGCCTCGAC
GAGAGCTGTAGCGCCGCACTAAACCAACGTAGTATATCGACTTGTTCCGC
TTTCATGTGACGAAAGCAACTCGATACTGTGGACTGGTTCCTAGACTGTT
GCAGCGTGGTAGCCTGATACTTAATGCGCGATGATGAGCTGCCTTTTGCT
CACCTCTTTCGGCGCAGACCGTCAAAATTTTGCCGATATCGGCATTTTTT
TTGTTTGGTGCTGCCGCTTCCGCCATAACCCTGATGCCTCTTCACTTGGC
AACCGTAAGGCCTCCGCTTGCGTTTCGCTGGTACGGAAGAATCTACGGTT
CTTGCACCACGGCCAGCAGAATAACGAGTGCCTCTCAGTAAATCTCGATT
TTGCCGCGCGAACTGTTGTTGTACCTCTAGGCCCAAGGGCTCGTGCGGTC
ATTCCTGAAAGCCTTCCCCGGGATCGAGCCCTTCATGGCCGCCACACGCA
GGTACGGCACACTGTGCAAACACCAAAGCTAAGAGAAGAGTAGCTGGATT
TTTGCGAAGGAAGGAAAATGTGATGCATATGCAGTAACAGATCAGCGGGG
ATTTTGGTTGTAGCTGCGCCTATTTTTGTGGTTGGCAGCTGCGAAGGAAC
ATACACACAAGACGATAGACTTTGGCGTGGTATACAGGTTGAGGATTGAT
ATCGGTCGTTTTCTTCTTCATCTGTGGCCAAAGGTTCGCGAGGGAGAACG
GCTACGTTTGCACCCTGACGGGACGGCGCCGACACCTGCCTGAGATCAAC
AACTCCCGCAATGCGGCCGCGAAGGCGCAAGCGGAGAGGCAGGCAGTCAA
CAGCGTTGTCCAGGTGTGCCGTCCATATTCCGCTCTGTGTGTGATTTCCT
GTTAGCGCTTCTCGCGTGGTGTCGTGCTAGTTTCTGGGCATCGTTACGCA
CATGCGACGATCCACTTGGACGTCGACTGTTGCGGCAACGCGAAACGCGA
ACGCGGAGAGAGGCAGGCCGCCAATGGCGGGTTTCAGGCGTTCGGTTTGG
ATGCGCCATTTGTTTGTTTGTTTGTTTGTTTTTTTCCCAGCGCTGTTCCG
AATCGAATAATTCATGTCGGTTCCCTTTTGTGAAAGTATTTTTGAAAGGT
AGCGAGACGCTTGTGTAAGACAGACCAGAGCACCTACAGCATGCTCCGTC
TGCATGTGCGTGTATGCATATAATGCGCGAGGTTTTGCCCACTGGCATTT
TGTCTGGACATTCGCGGGCGTGGTCGGCGTACCGTTGTCGTTGGATGTAC
AGGGCACCGCGGCCGACATCATGAAGACGGCCATGGTGCTGGTGGCCCGT
CGCCTCGATGCTTGGCGGTCTAGCCTGGATGAGGGCCTTGACTGTCCCAG
GCTCATCATGCAGGTGCGGCGCGCGGCGATTGAAACCAAGACAGGGAATT
GTGTCCTGGAATGTTCGGTAGGTAAACTTATTTCAGAGTGAGAACGATAA
CTCATTCCCGAGATGATCATATTTCACTGAACAACACGCCATGGAGACAT
ACCAAACCACGGAGTGCATTCAAGTCAGAGAGAGAGGGGGTGCAACAACT
ATCTCATGCATCCTTGAGGTGTAGCAAACTCTCTCAGTCCGTACTTGCCC
GAAGGCAAGGCAGGAGGGCTTGCTTTTCGGGTCAGCAACACAATTCGCAC
GATCACTGAGGGTTCAACCTGACCAAAAGTATCCGCTGTGCTGTTCTTCG
CATCCGCCACCGCATCTGTATACATAGAGGAAATATCGTCGACGTGTCCC
ACAGCTGTCGTTGGAGGTTAGCTGGGGTCCCGCACTACTCTTTTTGTCAG
GTGTTGGCCCTAACATGTCCACGTGCGGCAAGCAAAAACCACCGCCCATT
CACGAAACCGGTATGTTTTCGTAACACACGACATGTTCCTACGATGTGGC
AACCCCCCGGAGTTGCTGCGGACATCTTGGGCGATTGCCATGCCCCCATG
TGATTGTGTCGTGCTATGTCCCCTTGATTCGTACAGGTGGTATCTTCTAT
CCCCTATTACCCTCCACGTCTTACCCGTTTCAACCCGTGCCATCAATTAT
TTGGCTTCACGCCAAGCATGCAAGTTTTTTCTCAACTGCATCTTCGCGTC
AATGAATCGTCCGTCTTTACAGTTCTTCATCTTACCCGCAGCTCACTTTT
AGCGATTGCTCCTCGGAGCATATGCATTGGGCATGACACACACCGACTTC
AGAATGATGCCGCCTACTTCTGGTTTTGTTTCTGGCGACAACTAAGCCCG
AGTTTTGTCTTCAATATCAGCGTTTTGCCACCCATACAGTGTTGATCAGC
TGCTGTGCACGTACCCTCCTTGACGTGTATATTTTCTATAACGTTGTGTG
TGGACGGCTGTCGCAACCTCAAACCTTCTTGTCGGGAGGAGCGTCAGATC
CACGACGAGCTTGTTCTCGAGTGCCCGGCCTGTGAGGAAGACCTGGAGCG
ACTCAAGGTAAGTCGTGACTTGACTCGATTCGCCTTTTTTACCTTCAGCT
CTGCCCTCGCAACGGACGAAGAGGTGATCGCACTTAGTTCTTGCACTCGT
CTTTTTCAGTTTCCGGCTACTCTTTTCCATGTCATCTGGGCGTGTCTGCG
TGTCTTGACACTATCTAAGAGAAGCAGCTGCTTGTGATAGAGAATGAGGC
GCATGGTGCACTGTACAGTGCAGACCGCAGCACGTCACGTGCCGACGTCG
GCGTGGAAACAGCGTTGTGTAAGTTTCCAAGACTATTTTGGAGTATCGGC
GATATACTCTATAGACTATTCCCGATTGCGTTCGTAACCGGGGGTGAACT
AGCAGCTAGACTAAATGTCCGTCCGAAACATTATTTATGATACGTGGTCG
TATCCACGATGTGCAAGATGTTGACACAAAGGCCGGTACAGATGTGTTCG
GCTGGCAGGCACTACTGCTCATGTAGGCTTCGCACACTCTTCTCTGTTTG
GGTTTCATTCTGGGAGTCGCTGGGTAGAAACAACGTGAAACTGACGCTGC
TTCGTATTATATTGCGGCCACTGTAGCAAACGGCGACGCCCGACTGCACT
AAGCCCTCGAAACTGGTTCTTTACCAGGGTTTGCTGGCCGACTGTATGGA
GGTGGAAGCTCCGGCAGTGCTGGGCATCGAGTGCCCGCTGACTGTCAACA
TGCTAGTGGGCATGTCATGGGGCAGCATGAGGAGGGTCGTGTCTGACGAC
GAGGATGACAACGATAGCGAGTAGCCTTGGGTGTGTGTGCGATTGTGTGA
TTTCCACCCGGTAGACTCTGCTAGCGGCCTGATCGACACGAAAATTTGGT
TGGAACGGGCACAACTACCTACTCAGTGTGCGCAGGCGCGTAACCCGCTC
ATGTTCTTGCCTACGGAAGGTGTTGTGGTTTGTGGTTGGTCTCAAGACGA
CAACGGCAACGTCAATGACACCGACGTTGATCGGTTTGGCTCGGGGGTTG
TTCGTGCCTTGTTTTGTTTCTCGTCCGGGAACTTCCTTGTCGTACAAGTG
GAGTTGAGCAAAATGTTGTTGCTGGGCGCAGCTAAGGTTTGCACCGTTGG
CTGCACCCTCTTCTTTGCGAGAAAAGGCAGCGCTTATGATAGACGTCGTG
TTGTACACAAAATATTGCACCGCGTTTGTTTGCGTGTGGAGTCAACTTGA
GCCAGCGTTCTCCAGTGCACCGGCGTAGGGACAGGCTGTACTGAAGTGTT
TCTCAGAGCTACAGCCTGAAGGTGGAACTTGATGATACGTGGGTATGGTT
TTGTCGCCTACAACCAGTGCTATACGCCTGTGTCTCTCATTCGCTTTTGT
CTTTTGTTACGTATCCCTTCAAAACGTTTCTACGATTTTTGTGTTCCTCC
ATTTTGTCTTATCTCATGTCTTTGCCTGGCTCTATATCGTCTGTGTTGAA
GTTGCTCATATTTCGCGCATATCCGTCGATTTACAGGGTTGTTCAGACGC
AACGTTCGTAGCATGCAAATGGAAGATGATGAAAAGGTATACAGATATTT
ACCTGCACACCACACACACTGCCACACACACACATTGGGTAAAGACATAC
AGTGAAGAGTGAAAATCGACGCCAGGCGGGTCTACTTCGACCGGATGCGC
CATTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig683:20165..26970+

>mRNA_E_fasciculatus_S2_contig683.14955.1 ID=mRNA_E_fasciculatus_S2_contig683.14955.1|Name=mRNA_E_fasciculatus_S2_contig683.14955.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=885bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:20165..26970+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTAAGGGCAGCGATCCACTCGCCGGAGTAGAGGGAGTGAACGTGAG
GGACGCGTTTTCGGCGACGAAGTCGTTCACGCTCATGGCCGCCGACTACA
GCCAAATAGAGATGAGGGTGCTCGCCGACGCTTGCCGAGACCCTGGGTTG
AGGAACCTCTTCGCCACTCTCGGGGGCACGAACGACGCGGGTCCTAGCAC
TGGCGGAGGGGACGTGTACAGGAAACTGGCTGCGCAGGTGTTCGGCAAGG
AGGAACAAGGCGTCAGCGACGAAGAGCGGAATCGCGCCAAGGTCGTTTGC
CTGGGAATCACCTACGGTATGGGAACCCCGCAAGTGGCGAAAAAACTAGA
GATCACCGAGAGTCAGGCCCAAGGGCTCGTGCGGTCATTCCTGAAAGCCT
TCCCCGGGATCGAGCCCTTCATGGCCGCCACACGCAGGTTCGCGAGGGAG
AACGGCTACGTTTGCACCCTGACGGGACGGCGCCGACACCTGCCTGAGAT
CAACAACTCCCGCAATGCGGCCGCGAAGGCGCAAGCGGAGAGGCAGGCAG
TCAACAGCGTTGTCCAGGGCACCGCGGCCGACATCATGAAGACGGCCATG
GTGCTGGTGGCCCGTCGCCTCGATGCTTGGCGGTCTAGCCTGGATGAGGG
CCTTGACTGTCCCAGGCTCATCATGCAGATCCACGACGAGCTTGTTCTCG
AGTGCCCGGCCTGTGAGGAAGACCTGGAGCGACTCAAGGGTTTGCTGGCC
GACTGTATGGAGGTGGAAGCTCCGGCAGTGCTGGGCATCGAGTGCCCGCT
GACTGTCAACATGCTAGTGGGCATGTCATGGGGCAGCATGAGGAGGGTCG
TGTCTGACGACGAGGATGACAACGATAGCGAGTAG
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