mRNA_E_fasciculatus_S2_contig683.14954.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI) HSP 1 Score: 1090 bits (2819), Expect = 0.000e+0 Identity = 673/854 (78.81%), Postives = 700/854 (81.97%), Query Frame = 1
Query: 1 MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFPMEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGTRTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSS--RSPRPARNKSPSQSPRTSQPPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN*RIWERMKRAGWLTSSSSISSS 2514
MHSNTRPEAVWNLVPPGRPPSGPALH QAKNRPFALLKSLEPPRGPD+FPME FRRPLWPD DRVGASGIG G TASDRH+SQA ANARTSQ SS +LHTPTSGPRG G MA FSPALSRAS+TMMTPVQ+TQQ+PEGFSMFGGKAYSTPASHGS SQPPLSSHT PT APG IPYGGGGSSGVGGGLARFKTL QETQ GRG SSSG IR+ TARG +NFLSPSSLMG PN TP DDSPSSS AY FTP S GP TAAGRKRPRAPSTATAA V SVGGGNLSADVSG RTWGSLA+GSRGRA XXXXXXXXXXXXXXXXXXXXXXXXXX RSPRPARNKSPSQSPRTSQPPP PRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+PRAQQATAP++GAVVYLPG+AER+AWGAS G ESDTSGCSQE+DF EGEMYLLPL ACVGEDKEAA+AAGY LPLDCETSYDERWAAFAKLVALPVKKV ALMPLIAW RRPESR FLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSTKHHTTVSGLFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A G NA SGDGGR PAIVAAV AEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLP+RVTRFS+ALGNHLEGLKRTAV AVGGRDFNLASPDQ + +++ +K + S+ +S
Sbjct: 1 MHSNTRPEAVWNLVPPGRPPSGPALHTQAKNRPFALLKSLEPPRGPDYFPMENFRRPLWPDDDRVGASGIGAGXXXXXXXXXXTASDRHISQA-ANARTSQHSSPHLHTPTSGPRGTGRGMASFSPALSRASTTMMTPVQQTQQKPEGFSMFGGKAYSTPASHGSICSQPPLSSHTPIGSNTPTVAPGTIPYGGGGSSGVGGGLARFKTLVQETQXXXXXXXXXXXXXXGRGGSSSGCGIRDSTARGMPSPSSNFLSPSSLMGSPPNALTPCDDSPSSSAAYAFTPSSXXXXXXXXXXXXGPLTAAGRKRPRAPSTATAALGRPMTPGTVLSVGGGNLSADVSGARTWGSLAEGSRGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPRPARNKSPSQSPRTSQPPPTPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQPRAQQATAPMIGAVVYLPGRAERIAWGASA--GTESDTSGCSQEDDFEEGEMYLLPLAACVGEDKEAAKAAGYHLPLDCETSYDERWAAFAKLVALPVKKV---------------ALMPLIAWRRRPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-------LSTKHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAIVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVAD-VLFKHLKLPSPPVKAGSVHAS 828
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: POLAc (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE) HSP 1 Score: 901 bits (2329), Expect = 1.650e-315 Identity = 581/832 (69.83%), Postives = 606/832 (72.84%), Query Frame = 1
Query: 151 MEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGTRTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSSRSPRPARNKSPSQSPRTSQPP-PIPRRYKLDDFAGADDVCFNAA----------------------------ASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAA------GANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN*RIWERMKRAGWLTSSS 2499
MEKFRRPLWPD R GASGIG G ERGHGKGPGTASDRH+SQ+FANARTSQ SS +LHTPTSGPRG GG M FSPALSRASSTMMTPVQ+TQQQP GFSMFGGKAYSTPASHGS SSQPPLSSHT T APG IPYG GGSSGVGGGLARFKTLAQETQEE+HKKQQE R GSGRG+SS G IR+ T RG +NFL+PSSLMG PN TP DDSP SS AYTFTPPSSAAPPSY+NW TGPSTAAGRKRPRAPSTATAA VRSVGGGNLSADVSG RTWGSLA+GSRGRAG XXXXXXXXXXXXXXXXXXXXXXXXXX K P PRRYKLDDFAGADDVCFNAA ASSEGLAIFLERCE SGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+ L A + + AS + ESDTSGCSQE+DF EGEMYLLPLGACVGEDKEAAEAAGY LPLDCE VALMPLIAW RRPESR FLARSAA XXXXXXXXXX +STKHHTTVS LFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A G NARSGDGGR PAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMP +PVLAGMEVSGVVFLP+RVTRFSNALGNHLEGLKRTAV AVGGRDFNLASPDQA +I +RM++ G + SS
Sbjct: 1 MEKFRRPLWPDDHRFGASGIGAGGERGHGKGPGTASDRHISQSFANARTSQHSSPFLHTPTSGPRGTGGGMVSFSPALSRASSTMMTPVQQTQQQPGGFSMFGGKAYSTPASHGSISSQPPLSSHTPIDSNTRTVAPGTIPYGSGGSSGVGGGLARFKTLAQETQEEDHKKQQERRGGSGRGNSS-GCGIRDSTVRGMPSPSSNFLAPSSLMGSPPNSLTPCDDSPFSSAAYTFTPPSSAAPPSYSNWPTGPSTAAGRKRPRAPSTATAALGRPMTPGTVRSVGGGNLSADVSGARTWGSLAEGSRGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKXXXXXXXXXXXXSPTPRRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQG--------LCYAFFRGVDPSPSLLTCASAAR-TESDTSGCSQEDDFEEGEMYLLPLGACVGEDKEAAEAAGYHLPLDCE-----------------------------------VALMPLIAWRRRPESRTFLARSAAAAAEGGSDRDGHEPSVDSXXXXXXXXXXH-------VSTKHHTTVSRLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAVHKPDAEGVNARSGDGGRLPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPTVPVLAGMEVSGVVFLPERVTRFSNALGNHLEGLKRTAVKAVGGRDFNLASPDQAKKQQIGKRMQQ-GRIDGSS 779
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI001ACCD131) HSP 1 Score: 82.8 bits (203), Expect = 2.210e-12 Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 3
Query: 2466 NEEGRVADILFKHLKLPSPPV--KAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
N +++D+LF HL+L P K S H STSA+VLE L+GKH VV ILE R ++K K+TYVD A+PA+ R+H ++NQT A TGRLS + PNLQ
Sbjct: 584 NSTQQLSDVLFVHLRLDPPDKGKKTASGHYSTSADVLEALRGKHPVVDMILENRELSKLKSTYVD--------------ALPAAVDPQTGRVHTSYNQTGAVTGRLSSTNPNLQ 683
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3LK42_9CHLR) HSP 1 Score: 79.7 bits (195), Expect = 1.960e-11 Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 3
Query: 2466 NEEGRVADILFKHLKL--PSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
N +++D+LF HLKL P K S H STSAEVLEGL+G H V +LE R ++K K+TY+D A+PA+ R+H +++Q A TGRLS + PNLQ
Sbjct: 580 NSTQQLSDVLFGHLKLEPPDKSKKTASGHYSTSAEVLEGLRGAHPVADLVLEHRELSKLKSTYLD--------------ALPAAVDEATGRVHTSYSQAGAVTGRLSSNNPNLQ 679
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A0G0BME5_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 2.520e-11 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 3
Query: 2466 NEEGRVADILFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
N ++++ILFKHLKLP+ +K ST+A LE L+ +H ++A I E+R + K KTTY+D L + G +RIH T+NQ A TGRLS PNLQ
Sbjct: 552 NSPSQLSEILFKHLKLPTADIKKTKTKYSTAASELEKLKDEHKIIAKIEEYREIFKLKTTYLDTLPKMVDGN---------------SRIHTTYNQAVAATGRLSSENPNLQ 648
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7W1NXG5_9CHLR) HSP 1 Score: 77.8 bits (190), Expect = 3.380e-11 Identity = 54/126 (42.86%), Postives = 66/126 (52.38%), Query Frame = 3
Query: 2424 CFSGPGK*LAHMGTNEEGRVADILFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
SG GK N ++ DILF LKLP+ +K + ST A VL+ L G+H VV ILE+R VNK K TYVD L E + G R+H ++NQ A TGRLS S PNLQ
Sbjct: 86 AVSGQGK----FNINSPKQLNDILFDKLKLPTEGLKKTTHGYSTDANVLDSLSGQHIVVDKILEYREVNKLKGTYVDTLPEL----------INPHTG----RVHTSYNQAGAATGRLSSSNPNLQ 193
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7X2PKT3_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 9.620e-11 Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 3
Query: 2478 RVADILFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
+++ +LF+ LKLP PP +A ST+A+VLE L H +V +LEFR ++K K TYVD A+PA + R+H ++NQ A TGRLS S PNLQ
Sbjct: 511 QLSKVLFEELKLPPPPRQAKGKPVSTAADVLENLAEGHEIVRKVLEFRQLSKLKGTYVD--------------ALPALVKSDTGRLHTSFNQAGAATGRLSSSNPNLQ 604
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=3 Tax=Desulfovibrio TaxID=872 RepID=G1URI1_9DELT) HSP 1 Score: 77.0 bits (188), Expect = 1.320e-10 Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 3
Query: 2478 RVADILFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
++ D+LFK L LPSP G ASTS + LE L G+HAVV IL+FR + K ++TY+D L G QG RIH T+NQ + TGRLS S PNLQ
Sbjct: 576 QLGDVLFKTLNLPSPRKTKGG-QASTSQQTLEKLAGRHAVVDSILQFRKLEKMRSTYLDPLPRLVDG-----------QG----RIHTTFNQKATATGRLSSSNPNLQ 667
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5KIH3_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 1.610e-10 Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 3
Query: 2478 RVADILFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
+VA++LF+HLKL P + G ST EVLE L G+H + ILE+R K K TYVD L SAV G RIH T+NQT A TGRLS S PNLQ
Sbjct: 37 QVAEVLFEHLKLQ--PKRKGKTGYSTGVEVLEELAGEHELPRLILEYRQYEKLKNTYVDVL----------PSAVNPVTG----RIHTTFNQTMAATGRLSSSDPNLQ 128
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Match: DNA (polymerase I n=1 Tax=Chloroflexi bacterium ADurb.Bin180 TaxID=1852857 RepID=A0A1V5YLF8_9CHLR) HSP 1 Score: 76.6 bits (187), Expect = 1.730e-10 Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 3
Query: 2466 NEEGRVADILFKHLKLPSPPVKAG-SVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQ 2801
N +++D LFK L+LP ++ G S ST+A+VLE L+GKH VV +LE R + K K+TYVD A+P R+H +WNQT A TGRLS S PNLQ
Sbjct: 565 NSSQQLSDALFKRLELPVAGLQKGTSGRYSTAADVLESLRGKHPVVDLLLEQRRLAKIKSTYVD--------------ALPQLVNPRTGRVHTSWNQTGAVTGRLSSSDPNLQ 663 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig683.14954.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig683.14954.1 >prot_E_fasciculatus_S2_contig683.14954.1 ID=prot_E_fasciculatus_S2_contig683.14954.1|Name=mRNA_E_fasciculatus_S2_contig683.14954.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=817bp MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFPback to top mRNA from alignment at E_fasciculatus_S2_contig683:11041..19876+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig683.14954.1 ID=mRNA_E_fasciculatus_S2_contig683.14954.1|Name=mRNA_E_fasciculatus_S2_contig683.14954.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=8836bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:11041..19876+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig683:11041..19876+ >mRNA_E_fasciculatus_S2_contig683.14954.1 ID=mRNA_E_fasciculatus_S2_contig683.14954.1|Name=mRNA_E_fasciculatus_S2_contig683.14954.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2451bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:11041..19876+ (Ectocarpus fasciculatus EfasUO2)back to top |