mRNA_E_fasciculatus_S2_contig683.14953.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig683.14953.1
Unique NamemRNA_E_fasciculatus_S2_contig683.14953.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA75_9PHAE)

HSP 1 Score: 567 bits (1461), Expect = 3.170e-193
Identity = 340/443 (76.75%), Postives = 351/443 (79.23%), Query Frame = 1
Query:    1 MVTLLGAILVLTGGSAGPAVATAFSTTPSCFPQSDKFLPPSISTRAATTVAVGREHGCSSISRFARCEGRATAVMLSGGGGXXXXXXXXXXRDAGSPRNFAPRMFRRGGDGSHAGSSGSKSGSNVMGGIFGGFDSDSGSSGPPRSGGLGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPRLGKSPPAR 1329
            MVTLLGA+LVLTGGSAGPAVA AFSTT  C+ QSDK L PSI+TRA TT AVG EHGC SISRFARCE RATAVMLSGGGG          RD   PRNFAPR+FRRGGDGSH GSSGSKSGSN++G IFGG DSDSGSSGPPRSGGLG RGXXXXXXXXX                      XXXXXXXX                                 SG QGGITATN LLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNS+SFSSVGPVVE  MGKAKFVTVY +AGIAGNVLSC+VNPRTPSVGASGAIFGMVGAWGAFCLMNETV+GRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAA+TFLIGPR   RLNPYTGQPYIVDESF LGWPRLGKSPPAR
Sbjct:    1 MVTLLGALLVLTGGSAGPAVA-AFSTT-RCYTQSDKVLQPSITTRATTTAAVGGEHGCFSISRFARCEDRATAVMLSGGGGDGG-------RDTALPRNFAPRIFRRGGDGSHPGSSGSKSGSNLVGRIFGGLDSDSGSSGPPRSGGLG-RGXXXXXXXXXNDGENTEDSKGDMMALGAAHVMXXXXXXXXADSSQPESTLRGGYRRRSVFGRRPVQRQAGG--SGGQGGITATNALLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTVAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAITFLIGPR---RLNPYTGQPYIVDESFKLGWPRLGKSPPAR 428          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK43_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 1.100e-137
Identity = 208/218 (95.41%), Postives = 212/218 (97.25%), Query Frame = 1
Query:  673 SGSQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPRLGKSPPA 1326
            SG QGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNS+SFSSVGPVVE  MGKAKFVTVY LAGIAGNVLSC+VNPRTPSVGASGAIFGMVGAWGAFCLMNETV+GRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPR KRRLNPYTGQPYIVDESF LGWPRLG+SPPA
Sbjct:   51 SGGQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTLAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRFKRRLNPYTGQPYIVDESFKLGWPRLGESPPA 268          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 8.470e-45
Identity = 92/195 (47.18%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  694 TATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVD 1278
            + TNVLLA+ A +Y  Q   P IT  G K+   I  +GQWYRL+TPI LH +  HL +NS+S  ++GP VE   GK + +++YVL+G++G + SC  NPR  SVGASGAIFGMVGA   F   N   +G   + R L+++ +TV+IN + G+  SQIDN GH GGF+ G  +T+L GP ++   +PY+G P +VD
Sbjct:   19 SVTNVLLAITAAIYGAQWLVPGITMQGAKITSKI-MRGQWYRLVTPIFLHANLAHLLMNSMSLYNIGPFVEQWFGKRRMLSIYVLSGVSGVLASCYWNPRASSVGASGAIFGMVGAAACFFASNRNELGAG-ADRGLQSILRTVVINTIMGLQISQIDNAGHAGGFVAGFVLTYLFGPNMRWVGSPYSG-PRLVD 210          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z519_CHLVA)

HSP 1 Score: 155 bits (391), Expect = 6.430e-39
Identity = 88/198 (44.44%), Postives = 128/198 (64.65%), Query Frame = 1
Query:  688 GITATNVLLALNAIVYLFQM-RYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVD 1278
            G  AT+VLL  NA+++  Q+    A+T  G K+  A+   GQW+RLLTP  LHG+  HLAVN  S +++GP VEGA G  +F+ +Y+ A +AGNV S +  P++ S+GASGA+FG+ GA   +   N  + G+  S R LR + QT+++NVVYG+ S++IDN GH+GG +GGA    L+GPR +    P     ++VD
Sbjct:   35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVN-ALVVAGQWWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVASFLGAPKSVSLGASGAVFGIGGALAMYFYRNRDIYGKT-SDRVLRQLWQTLVLNVVYGLSSTRIDNWGHMGGLVGGALAGLLLGPRFQATTLPGKRGKWLVD 230          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENP6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.420e-37
Identity = 86/202 (42.57%), Postives = 131/202 (64.85%), Query Frame = 1
Query:  700 TNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPR 1305
            T  L+  N  +Y  Q+ +P+IT+ G K +  I  + + YRL++P+ LHG   HLA+NS S +++GP VE   G+ +F+  Y+ AG+AGN+LS  ++P  PSVGASGAIFG+VGA+  F   N+++ G++  +R L ++ QT + N++YG  S QIDN GH+GG LGGA + +  GP+L     P  GQ  ++D+  N+  PR
Sbjct:  199 TQRLVWTNVAIYGLQVVFPSITRWGAKRSDLILSRRELYRLISPVFLHGGVVHLAMNSFSLNNIGPEVERCFGQGRFLGTYLAAGVAGNLLSAYMSPN-PSVGASGAIFGLVGAYAVFLGRNKSLFGKSG-ERGLASLRQTFVTNLIYGFMSPQIDNWGHIGGALGGATIAYHFGPKLYLAALP-NGQRIVLDKP-NIRVPR 396          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I841_GUITC)

HSP 1 Score: 153 bits (387), Expect = 3.320e-37
Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  679 SQGGITATNVLLALNAIVYLFQM-RYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRT-PSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMG-SSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDE 1281
            S+     T+  L +N +V+L Q+    A+ +AG K+   I  + Q+YRLLTPI LHGS +H+ VN  S +++GP VE   G  + V  Y+LAGIAGNV S    P+  PSVGASGAIFG+VGA G F   ++ + G + S+  L  + QT ++N++ G+   S IDN GH+GG +GGA + +LIGP LK + +  TGQ  +VDE
Sbjct:  138 SRSSRAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQDIFG-DRSRYMLNGIIQTCILNLIIGLAPGSNIDNWGHIGGAIGGAVVAYLIGPNLKVKRS-LTGQ-VLVDE 338          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFU7_9RHOD)

HSP 1 Score: 151 bits (381), Expect = 6.360e-36
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  700 TNVLLALNAIVYLFQMRY-PAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMG-SSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGW 1299
            T+ L AL  + +L Q+   PA   AG K+  AI Q G+WYR  TP+ LHG+  HL VN  S  S+GP +E   G  ++ T+Y+L+G++GN+ S + N   PSVGAS AIFG+VGA  AF   N    G+ +SQR LRN+A   ++N+  G+  +S+IDN GHLGG LGGA    L GPRL   L+P TG  ++VD     GW
Sbjct:  203 TDWLAALTILSFLLQLLAGPAYVMAGAKVNAAI-QAGEWYRFFTPLFLHGNTLHLIVNLSSLKSLGPQIEATYGHRRYATLYLLSGLSGNLFSFLFN-TAPSVGASSAIFGLVGAMAAFYACNGDWFGQEHSQRMLRNIAWVTLLNLGQGLAPASRIDNFGHLGGLLGGAVFGILFGPRLY--LDP-TG--HLVDIPLAQGW 397          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU80_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.080e-35
Identity = 82/183 (44.81%), Postives = 110/183 (60.11%), Query Frame = 1
Query:  685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRL 1233
            G  + T+ L+  N I+Y  QM  P IT+ G K +  I Q  Q YRL TP+ LHGS  HL +NS S  ++GP VE   G  +F+  YV AGIAGN+ S    P  PS+GASGA+FG++GA+ AF   N    GR+  Q   R V+ T+M+NV++G+ S  IDN  H+GG + G  M    GP+L
Sbjct:  111 GKYSWTSRLIVTNVIMYGLQMMMPGITRMGAKRSDMIMQGQQLYRLFTPVFLHGSILHLMMNSFSLQNIGPEVERNFGSGRFLATYVAAGIAGNMASAYYTPN-PSLGASGAVFGIMGAYYAFLSNNSQFFGRSGEQMMGR-VSSTLMMNVIFGLVSPSIDNWAHIGGAVAGVGMAMTFGPKL 291          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK25_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.620e-35
Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 1
Query:  685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRR 1242
            G +TATN LL +N +V+L Q + P++T + +K+A AIT  G+WY             HLA NS++  ++G   E  MG  KFV +YV +G++GNVLSC+V+P TPS+GASGAIFG++GA     L       + +    + +V QT    V+ G+    ID+ GHLGGF+GGAA+T LI PR  R+
Sbjct:   75 GVLTATNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYXXXXXXXXXXXXGHLAGNSMALFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLTPSLGASGAIFGLLGAEAMIHLAGP----KASMPLFVSSVGQTAFFAVLVGLLVPNIDHWGHLGGFVGGAALTLLIQPRSPRK 256          
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y9_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.790e-34
Identity = 80/186 (43.01%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRR 1242
            G +TATN LL +N +V+L Q + P++T + + +A AIT  G+WYRL+          HLA NS++  ++G   E  MG  KFV +YV +G++GNVLSC+V+P + S+GASGAIFG++GA     L       + +    + +V QT    V+ G+    ID+ GHLGGF+GGAA+T LI PR  R+
Sbjct:  177 GVLTATNALLVINFLVFLQQQQDPSVTTSFYNLAYAITDHGEWYRLVXXXXXXXXXVHLASNSMALFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLSASLGASGAIFGLLGAEAMIHLAGP----KASMPLFVSSVGQTAFFAVLVGLVVPNIDHWGHLGGFVGGAALTLLIQPRSPRK 358          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rhomboid3.170e-19376.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Rhomboid1.100e-13795.41domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Rhomboid8.470e-4547.18domain-containing protein n=1 Tax=Tribonema minus ... [more]
Rhomboid6.430e-3944.44domain-containing protein n=1 Tax=Chlorella variab... [more]
Hypothetical1.420e-3742.57protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Rhomboid3.320e-3744.61domain-containing protein n=1 Tax=Guillardia theta... [more]
Rhomboid6.360e-3646.04n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=269... [more]
Hypothetical3.080e-3544.81protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Rhomboid6.620e-3543.55domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Rhomboid7.790e-3443.01domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig683contigE_fasciculatus_S2_contig683:1790..10164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score425.6
Seed ortholog evalue2.8e-116
Seed eggNOG ortholog2880.D7FK43
Model size2536
Hectar predicted targeting categorychloroplast
Exons10
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
Cds size1332
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig683.14953.1prot_E_fasciculatus_S2_contig683.14953.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig683 2994..10164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842339.763212-UTR-E_fasciculatus_S2_contig683:1789..29931696842339.763212-UTR-E_fasciculatus_S2_contig683:1789..2993Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig683 1790..2993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842339.7757678-CDS-E_fasciculatus_S2_contig683:2993..30871696842339.7757678-CDS-E_fasciculatus_S2_contig683:2993..3087Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 2994..3087 -
1696842339.786321-CDS-E_fasciculatus_S2_contig683:3771..38241696842339.786321-CDS-E_fasciculatus_S2_contig683:3771..3824Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 3772..3824 -
1696842339.7963955-CDS-E_fasciculatus_S2_contig683:4444..46301696842339.7963955-CDS-E_fasciculatus_S2_contig683:4444..4630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 4445..4630 -
1696842339.8071313-CDS-E_fasciculatus_S2_contig683:5115..52141696842339.8071313-CDS-E_fasciculatus_S2_contig683:5115..5214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 5116..5214 -
1696842339.818443-CDS-E_fasciculatus_S2_contig683:5619..57391696842339.818443-CDS-E_fasciculatus_S2_contig683:5619..5739Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 5620..5739 -
1696842339.8295677-CDS-E_fasciculatus_S2_contig683:7197..73261696842339.8295677-CDS-E_fasciculatus_S2_contig683:7197..7326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 7198..7326 -
1696842339.8400087-CDS-E_fasciculatus_S2_contig683:7635..77431696842339.8400087-CDS-E_fasciculatus_S2_contig683:7635..7743Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 7636..7743 -
1696842339.8510766-CDS-E_fasciculatus_S2_contig683:7946..80401696842339.8510766-CDS-E_fasciculatus_S2_contig683:7946..8040Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 7947..8040 -
1696842339.861775-CDS-E_fasciculatus_S2_contig683:8598..89921696842339.861775-CDS-E_fasciculatus_S2_contig683:8598..8992Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 8599..8992 -
1696842339.872589-CDS-E_fasciculatus_S2_contig683:10109..101641696842339.872589-CDS-E_fasciculatus_S2_contig683:10109..10164Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig683 10110..10164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig683.14953.1

>prot_E_fasciculatus_S2_contig683.14953.1 ID=prot_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=444bp
MVTLLGAILVLTGGSAGPAVATAFSTTPSCFPQSDKFLPPSISTRAATTV
AVGREHGCSSISRFARCEGRATAVMLSGGGGGGGGGGDGGGRDAGSPRNF
APRMFRRGGDGSHAGSSGSKSGSNVMGGIFGGFDSDSGSSGPPRSGGLGS
RGGGDGGGGWWSGGENTEDSKGDMMALGAAHVMMMASGDDDADSSQPEST
LRGGYRRRSVFGRRPLQQQRRAGGSGSQGGITATNVLLALNAIVYLFQMR
YPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPV
VEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGA
FCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGG
AAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPRLGKSPPAR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig683:1790..10164-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig683.14953.1 ID=mRNA_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=8375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:1790..10164- (Ectocarpus fasciculatus EfasUO2)
ATGGTGACTCTATTAGGTGCCATACTCGTGCTTACGGGTGGCTCTGCTGG GCCAGGTATGCGTTGTACTTTGTGAGGCGACTCCATTCTTTTTTTATTTT AGCATGCGGTGCAACATAGACTATGTCTACTGCTACAGCAGTACCAGCAG CAACGTCGTGGTCATGCCGCCATGTGGAGCTCCGTGGACACCATCCCTCA GAGGTCTTATGGGGCCGCTCATGTGCATTCAACAGGACAGCCCTGGACAA ACTGTAGACGGCGACAGTCAGAAGTGGTGCACTTCTGATCCGCGCACCAA AAGTCTGTACCCATCCTGTCAAGATCTACAAGATAGATTCATGCCTGCAG TCTACTTGTAGCAGCAGCCGCCAGACGTTATGCAGAGTCACCATGTCATT GTAGCCATTGCTTGAAGTCCACGTTTAGACCACCGTTACCCTATGGCCTT ACCTCGCTCACGGAGTAGCCCCGATCCGCGGTCACACACCAAAACTGCCT GTGGCGTATGCATGCATGCCCAAATTTGAAACGTTGCGTCGAGAAGGGCA ACCGTCCGTCCCTCTTTTGTTGCCCTCACAAGGAGAAGCGCTACTTCTAT ATATGGTACTCCGGAGTCCTGCAGCACATGCCTGATAACGTAGAATAGCC CCTTTCGAGGCGTAGGAGGTTACTGTGATAATGCGATGGGATGGCATGGG TTGATCGCATGCTGAGCAAAGCGAACAGCAAACCAATGGGCTCGAGAGAG CACTCTCTAAATACGCGATGTCTACTACTAAATAGCGGAACAACTGTTAT TTTGAACACAATATACTTACACACCTAGCACGAGGAATAAACATACCCCG GGTATTTGGGGTGGGTTGTCAGTGGGAGCTGCTGATTTTTTTCAGTCAAT CCTCAATTGGGGGGGAAAGCGCAAACAGACGCACGCATCGCAATCGGGTA GTTTCGCCTGACGATCAAATTGACCTCCCCCCGCCCGCATAAGCAAATAC CCGAGGACAAACGCTTCCCAACAAGCTCCTTGACTACACTGCTGTTGTAT TGCAAGGTTTGTGAAGGGGCCATTGTTTCAAATGTCATCAACCAATTCCA TTCAATCGCGATCGCCCTTCATCCCACCACCACCACTCCGCTCCTCCGCT TCTCTCGTCGTGCCCCCACCAGCCGTGGCGACAGCCTTCTCCACCACGCC CTCTTGCTTCCCTCAGTCCGACAAATTTCTCCCACCATCGATCTCTACAC GAGCGGCGACCACCGTTGCGGTGGGCAGGGAACACGGCTGCTCCTCCATC TCCCGCTTCGCCCGCTGCGAGGGCAGAGCAACAGCAGTGATGCTTTCTGG CGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGGGAGAGACGCGG GATCCCCACGTAACTTTGCGCCTCGCATGTTTCGCCGCGGTGGCGACGGA AGCCATGCTGGTTCCAGCGGCAGCAAAAGCGGCAGCAACGTCATGGGCGG GATCTTCGGCGGGTTCGACAGCGACAGTGGTTCGTCAGGGCCTCCGAGGA GCGGCGGGCTGGGGAGGTGAAGTTCTCGGTTTGTCCTCGGTTGCAGCACG AAGCACACTTTTCTTTGCTGCCTGTATTGCAGTATCTCCTTCAATCGTAG TCGACATCGACACCCTGGCTGCTGGACTGCTGTCCGAAGTCTCACGGATA TCGTTTCTTGCTTGGTTTAGGAAATTTTGGCGTCAACTGCGCGCGAACGG GCGACTCTTGGACTCTCGGTCGATTTTGTGCTAGAATTGAAGCTCTCAGA ATTGGTGCGATTGTCGTGGCTAAAGCGATGACATCCTCAGCTGCGCCTTG GTTGTATCCGCCACCGACACCCTGTGGCACAAATCTACGGTGACTTGCAC GCTCCTTCGCCTGATCTAATCCTACTGTTCATGTTGTATGTTGGTGGCAG CACTTGTTCGCGTTTTGACAGATCTTCATGGTTTTGTGCTGCTTTTGGAT TTGCTCCCCGCCTCTAAAATTTTAGCAAATGGCACTCTTGCTACACTGCC GCAAGCCTTTGCGGTATCACTGAGATCATGTACCGTCAGCTAAACAGCAG TCCCGTCATCTCCTGCCTCCAAAGCAGGGGCGGCGGTGATGGAGGCGGAG GTTGGTGGAGCGGCGGGGAAAACACGGAGGACAGCAAGGGCGACATGATG GCTCTCGGGGCTGCGCATGTGAGAAAGCGAAGCAGTGCCACGGGATCAAG GCCGGGAGGGTTGTATCTCAGGTCACCTTTAGGGAAGCATCCGTCGAAGG AGACATGCTTTTGGCCGAACAAAAGACGGTAGACTTGCCTCGGATATAAC TTTCTTTAAGAACGACGGTATGTTGTGTGCGATGTCTCGTCGTTTGGTTG AATGCTTTTGTGAGAGAGCAGGTGATGATGATGGCGAGTGGTGATGACGA CGCCGACTCGTCGCAGCCGGAATCGACGCTCCGCGGGGGCTACCGTCGGA GGTCCGTTTTTGGTCGACGACCGCTGCAGGTGTGTACCGATGGGAGGAGG AGAAGGGGAGAGCAGCATAGCTTGTGGGGTCGTATATAGCCCGCAAGCAC GCACGTATTGCATACGGATGAGTACAGTGCATACCACCACGTAGTTGATC TTGATTTCCATCTCGATTTCATCAGTCCTTGTCAAGTTCGAAACCAACTG CACCGGCCTGGCAAGCATTCCACCCAGGCTTGCGGAGGTCCAAACATGCC AGTGCTGTGAGTGTGGTTGTCTCACTTGCCTCTGCTTGTTTTACTGTGAC TAGCGGTCTCCTGGACTTTGTTTCCCGCGTATGAGCAGCAGCAACGGCGG GCGGGCGGGAGCGGCAGTCAAGGAGGGATCACGGCGACGAACGTGTTGCT CGCGTTGAACGCCATCGTATACCTGTTCCAGATGCGATACCCGGCAATCA CCAAAGCGGGCTGGAAGGTGCGCGCACAACAAGCGGGCGGGAGGGTGCTC AAGTATTCCACGAATAGTATTGCATACTCGGAGTATGAGGTTTGTCCGTG TACCACTCAGGGTGACAAGGAGGGACCGGTTGGATACGAATGTAAACGCC CCAATGGTTCCTATGTATGAGTAGAAACAGAGTTGTCTCAATCAATCGTG CGTTACGAGGACATCCTTTGTTTTGCTGAGGTGGGAACCTCACTCACGGC CTGTACAATATTCAGACAAGTTGAGGGAACGGAAGAACGTTTGCCTGGTA ATTTTGGGGGGGTGACAACCGGTGACTGGGTAGGGCCTTAGAAAGGCCCG GAATGGGAATGGGAGTCATGGAAGAGTAGGTGATGGGGGTTTGTTTTGGG ATGTAGCGAGAAGGTTCCACCGTCGTATCTTGAACGTAGAGGCGGTGTCC TTCGTCCTCATAGTGGTCCGACATCTAAGATATAGAAGTAATATCAATAC TGAAAACTTGATGGTCTCTTAGGGATTGCTTTGAACGCTAGGGCTTCTGA TTATTGATCGACACCAGGTTCATTCTCGTCGGACTGTACCTCCGAACGGC CGTCTCGCGTTGGTAGATACTTGTTATCTTCTCTTGTCATAGGTTTCGTC TTGTCGTCATTTTCCTTCGCTGAAGATCGTTTTGTCGTCGCTTTCCTCTG TTGTGAGCGACGACAGAACGTGAGTAACAGAGGAAAGCGACGACAAGAAG AAATACAGAGAAGATAGAGGAGTTCTACAAACGTGAGACCGTTTACGCGA GACGGTCGTTGGGAGGTACAGTCCGACGAGAGAAGCTGGCGTCGATCAAC AGTCAGAAGCGATGCCATCATCCGTACACCCATGACGAGCGTGCACGAAT GATCAAGGAATCGTGAATTTCCCCTCCCGCGCAATATGTGCCACTCCACT GCTGTGGTTCTGAGTAGTTTGCGAGGACATTTTGGTCGGGGCGGGTTTTC GTGGTGAATCAGGTAGTCGCGCTGTAGCACCAGCGCTGTAGCACATTCCC TGTCGGTGATACAAGTCGTTTGGTCTCACCTGTTTAGTAGTTGTACGCAA ACGCAGCTTGGCCATTCATTGACTTGTTCTGGTAGCGTTGGCGACAAGCG TGCCTCCAACCTCTCACCCCGTTCTGCGTCTATGTGTAGGTGTATTTATT TATTTTTGTACGCATCGACCGCGCTGACCGACTGACCGATGAACAGACGT GCGCGTCAGCGGGCCAAATCAAGGCCTCCGGAAGCGGACCAAAGTTCTAA GAATGAGCATCGCCCAGAGTGCCTCACAACAAACCTCTCTACGAACCTTT TACAAGAGAAACGCGGCAAAGCTTAACGCAAGACTTCGCCCGAAATTATG AAGCCGCTCATTTTGTTTGGCATGGCCCACGCTAACCGACTCACCAACGT GCGTACGCTGCTTCGCGCGCCGCAGATGGCGCCAGCGATTACTCAGCAAG GACAGTGGTACCGCCTCCTGACGCCCATCGTGCTGCACGGGTCCTTCACA CACTTGGCGGTCAATAGCATCTCCTTCAGCAGCGTCGGCCCGGTGGTGAG AGAAGAAGGGGGCGGGGCTTGTGTGTCACCATTTTTTGTGCGCCTACAGC AGCAGTAGCCCAGCACACAATGCCCTTCTGTATAAAGACACACGCACGCC TACGGTGTCGAGGTGTTACTTGACGCCTCGTTGGTTGGTTATACTGTGTG GACTAGTGCACCGATACGAAAGTGAGAACATTATGTGACGTGACCGATTA TGGGAATCTCGTTACCTTGTACGCCTGCTCGGTGGAATAAGCTATATTCA AATCGCGTGTTGGCTCTTCTTCGTTACGCCTGAAGAGTTGAACGATAGAT TGATTTTGTTGTCTACGGTGCCGCTTTTGCTCTAACGAGAGGTGTTGTCG CCTACGTTGCTGAGTCGCACGTCTGACGTGTTTGTCTGTCTTCAATATAG GTGGAGGGGGCGATGGGAAAGGCAAAGTTCGTGACGGTGTATGTTCTCGC AGGCATTGCTGGCAATGTCCTGAGCTGCGTCGTCAACCCGCGTACACCGG TGAGCTGAAGGGGCAAGAACCTTTCGCGGGAATGGCCCTCGTTGTTGACA TTTCACCTCGTCAATTGGCTCATGGTTGCTGTTTTCCAGAGTCGAAAGCG CCAAATACGCCTATATCCTTGCAAGCTGTAGATCACTCCAACGCACGTGC GTAAGACCGTACGTGCTAGATTGTCCGGGGTGGGTAAGATGCTCTCAAGC CGTGACGACTTAAGAAAGCATTCCAGCACCACCCGGCATACCTCTGTACT GTTCCACCGCATTTCCCAATGAAGCCACACTATTGTACTGCCTCCGAGCC ACGGCGAGTTACCTGCCCGAAACAATAATAAATATTTCAGTCAAGGCTTC TACTAATTTGGTGAGAGAATCGACCTTGTAGGCAAATCGTTGTTTGCAGT ATTTGTTTATTTTGTTTTCAGCAGACCATATGCGAAATGTGTGTGTTTGA ATCAAAGCACCATTTCCCCCTCATTTATCGGCAGTCGGTGGGCGCCTCGG GTGCGATATTTGGCATGGTCGGAGCTTGGGGGGCATTCTGCCTCATGAAC GAGACGGTGATGGGGCGAAATAACTCGCAGCGGGCGCTGAGGAACGTGGC ACAGACCGTAATGATCAACGTTGTGTACGGCATGGGCAGCTCGCAGATTG ACAACATGGGCCACCTGGGGGTGAGTTGTTCGTGTCTTGTGTTTTGTCTC CGCGATTGGGAGTCCTGCGTGGATTTTTTGCAAATGACAATATTTTTGGG CGCTCATGCTCGAAGTGTTGAACAGTGTTTGCAAGCGCGCTTTTTATCAC AGCAACGTCGAGAGGGCGTCGATGGAATGGGACGATACAGCATGGTTCAC GTACAGTTGAGGCAATGTGATGAAATGCAAGGTTTTTGTGCGCGAGAACG ATACGTTGTAGCGGAATCTGACTGCTGAGCTCGTTCCAAACGGCGTAACG CGGCCCATGAGACCCACAGCTGCACCACACAACGAATGTTGCGTACGATT GCGTACAAATCGAGCCCTTATGTCGCTAGGTGATAGCTTGTCTTCACAGT TGTGTGCTACAGATACAGTGCTTTGCCTGATTCGTCGCAGGGGAAGTTGG CGTTCGTGATGGACCACTTTCAAAGCGCCGACAACCCGCCCTCCCCGCCC CCGCCCCCGTAACACCATTTGACACGATCCACACGCAGCACATTTTCTCC TCTATTTCCGCGGTGTATGGTTCGTGTATGTTTACCCTGCGACCGCACGC ACCGTCGGCACCTGTGCCTGCCTCTATCCTATCTCCGCAGGGTTTCCTCG GTGGAGCGGCGATGACGTTTCTCATCGGACCACGGTTGAAAAGGCAAGTC CACCCGAGAGGTGCTGTGGGTGGCCAAGCTATATCCCGTGTCGTGGGATG CTTCCCGATGCGTTCAACGGTGGTGAACCGAGTTTGTTGTGTTGAGGCCT CTTCCGAGCTGTTATTTATGAACGAGGTGAAGCGTGTCGATCGAGTGGGT GCTGCCGTCTGGACAAAAGCTTGAGGTAGCAACATGTGGCCCGTGTTCTT GTGCAGAATTTAGGACGGATCAGGTGCTGTCGGTGCAAAATCTGACTTTG GGCGTAAGAGAACGTTGATCTAGCAGCGGCACAGAATCGAGGGTTGCGGG AGGCTCAAAATTGCAATCCTTGTACGCACGGCGCACATCCTACGAAACTG TGGCCTGTTTGTTGGAACAAGCGAAGCGGCCATGGCGGTGTAGGGTGGGT GGGTTCTGGCCCTACTGTACCTCTTGCGTCACGGCACGTTGTTGCCCTCC CATCCCTGCACGAAGGCAGGCAGCAGCAGTATCTTGTCCCATGCTACGAA AGCATCCCCCTTAGGGAAACGTGAGGTGGGCGTACCGCTAGCCCGGCGAT CGTCTGCTCGCCCTCCTTCCCAAACCCCCTCCTGCGCTGACATAAAACAG ACCGAAACCTACAACGCGGATATAATAGCCACAACATCTCTTTGTGTCGA TGCTTGTTCGCTTCTTCTGTACTACAGGCGGCTGAATCCCTACACGGGCC AGCCTTACATTGTGGATGAGAGCTTCAACCTGGGCTGGCCACGGCTTGGA AAGAGTCCCCCGGCTCGGTAAGAATCCCCCGCAAGCGATGTCTCAACAGC AGAGAAACAGGCGTCTTTGGTGATCAATCGCCTCCATCGCGATGTGCTCT CGGGTATTCATGGAGCGCGATGTCGTGGTGGTTGGTCTGACTTCTCGACA AGGGCGGACTCGATTCGCTCCTTTCGGAACTAGTTCGCTGGTAGGCGGAG GGGTGTACTGTAGCCATCAGACCATTGACTTCGTATCCCTACAAAGCCGG GACGGAGCACACCTGGACGGAGCACGCCGGGACGGAGCACACCGGGTTCT CACCGGACGAGGCTCTCACATCACCAAGGCCGGGGGGGCGCGTACAATTA ACGATGCTTGAGGTTTTGAGAAGGGTGGCACAGTCTTGGTATGGAGTGTG CGTTGACGGGGACATGCTCCCCTTTAACCTTCGGCGAAGATCTAGGAATT TGGCATGATGAGATTGGATCAAGTTGTGTTGGTTCTAGCGGGATGACCTA TTTGATGGGGATGCTTGATACAAACCTCTAATGCTTTTGGTGAGGAGTCT CTTCCGCCACGACGTTGATGGCGGTTCCAAACATGTTGACCAGCTAGCAT CGTGCGCGCAGTTGGACTTTGTAGTATCTACGGGCTTGAATTTTGTGATA CCCTGCTTGCGGGTTGGCGCAAGATCGGGGGGTCGAGAGCAGTGCGGTAC CGGTGTGGTACCTTTGGATAGATTTGCGTCGAACTCTTGAAAACCTGGAC GTGGTGATATGATGACATTATTGTTGCTGTAGCCATGTCGGCATTCTTTG GGGTACTTGCAGGCAAGCGTTGGTTTAGCTAGACTTCAGAGGCCACGGAC GGTGCGATGTACGTACTTGAATTTTTGCGAAACATTTTGGGTGTATCGAT ATGTCCTGGGTGTCCAAACCAATTATTCGAGCTCTGCTCCGCTGTAGGTT AGACTTTGAGGTATCAGAAGTATTTTTAGTATTTGTGTGCAGTGGGAAGT AGGGGTACACTGCGTATGACGTGCCCGCTCTAGCGTGTAGACGTTTATTC GGACTACAGAGTCTCCCGTGTGCTTGACAATGCGCCGCGGTAGAAAATGC GAGCAAATCGGGTGAGAAGGAACATCTGGGACTCTAGCACCGCAGTGATG TGTTGCACGCAATTATCTAACTTGCATGATGTGCTCACTTTGGTCTCAGC CAGCAGTAAAAACCTAGCACTAACC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig683:1790..10164-

>mRNA_E_fasciculatus_S2_contig683.14953.1 ID=mRNA_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1332bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:1790..10164- (Ectocarpus fasciculatus EfasUO2)
ATGGTGACTCTATTAGGTGCCATACTCGTGCTTACGGGTGGCTCTGCTGG
GCCAGCCGTGGCGACAGCCTTCTCCACCACGCCCTCTTGCTTCCCTCAGT
CCGACAAATTTCTCCCACCATCGATCTCTACACGAGCGGCGACCACCGTT
GCGGTGGGCAGGGAACACGGCTGCTCCTCCATCTCCCGCTTCGCCCGCTG
CGAGGGCAGAGCAACAGCAGTGATGCTTTCTGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGACGGCGGCGGGAGAGACGCGGGATCCCCACGTAACTTT
GCGCCTCGCATGTTTCGCCGCGGTGGCGACGGAAGCCATGCTGGTTCCAG
CGGCAGCAAAAGCGGCAGCAACGTCATGGGCGGGATCTTCGGCGGGTTCG
ACAGCGACAGTGGTTCGTCAGGGCCTCCGAGGAGCGGCGGGCTGGGGAGC
AGGGGCGGCGGTGATGGAGGCGGAGGTTGGTGGAGCGGCGGGGAAAACAC
GGAGGACAGCAAGGGCGACATGATGGCTCTCGGGGCTGCGCATGTGATGA
TGATGGCGAGTGGTGATGACGACGCCGACTCGTCGCAGCCGGAATCGACG
CTCCGCGGGGGCTACCGTCGGAGGTCCGTTTTTGGTCGACGACCGCTGCA
GCAGCAACGGCGGGCGGGCGGGAGCGGCAGTCAAGGAGGGATCACGGCGA
CGAACGTGTTGCTCGCGTTGAACGCCATCGTATACCTGTTCCAGATGCGA
TACCCGGCAATCACCAAAGCGGGCTGGAAGATGGCGCCAGCGATTACTCA
GCAAGGACAGTGGTACCGCCTCCTGACGCCCATCGTGCTGCACGGGTCCT
TCACACACTTGGCGGTCAATAGCATCTCCTTCAGCAGCGTCGGCCCGGTG
GTGGAGGGGGCGATGGGAAAGGCAAAGTTCGTGACGGTGTATGTTCTCGC
AGGCATTGCTGGCAATGTCCTGAGCTGCGTCGTCAACCCGCGTACACCGT
CGGTGGGCGCCTCGGGTGCGATATTTGGCATGGTCGGAGCTTGGGGGGCA
TTCTGCCTCATGAACGAGACGGTGATGGGGCGAAATAACTCGCAGCGGGC
GCTGAGGAACGTGGCACAGACCGTAATGATCAACGTTGTGTACGGCATGG
GCAGCTCGCAGATTGACAACATGGGCCACCTGGGGGGTTTCCTCGGTGGA
GCGGCGATGACGTTTCTCATCGGACCACGGTTGAAAAGGCGGCTGAATCC
CTACACGGGCCAGCCTTACATTGTGGATGAGAGCTTCAACCTGGGCTGGC
CACGGCTTGGAAAGAGTCCCCCGGCTCGGTAA
back to top