mRNA_E_fasciculatus_S2_contig683.14953.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA75_9PHAE) HSP 1 Score: 567 bits (1461), Expect = 3.170e-193 Identity = 340/443 (76.75%), Postives = 351/443 (79.23%), Query Frame = 1
Query: 1 MVTLLGAILVLTGGSAGPAVATAFSTTPSCFPQSDKFLPPSISTRAATTVAVGREHGCSSISRFARCEGRATAVMLSGGGGXXXXXXXXXXRDAGSPRNFAPRMFRRGGDGSHAGSSGSKSGSNVMGGIFGGFDSDSGSSGPPRSGGLGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPRLGKSPPAR 1329
MVTLLGA+LVLTGGSAGPAVA AFSTT C+ QSDK L PSI+TRA TT AVG EHGC SISRFARCE RATAVMLSGGGG RD PRNFAPR+FRRGGDGSH GSSGSKSGSN++G IFGG DSDSGSSGPPRSGGLG RGXXXXXXXXX XXXXXXXX SG QGGITATN LLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNS+SFSSVGPVVE MGKAKFVTVY +AGIAGNVLSC+VNPRTPSVGASGAIFGMVGAWGAFCLMNETV+GRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAA+TFLIGPR RLNPYTGQPYIVDESF LGWPRLGKSPPAR
Sbjct: 1 MVTLLGALLVLTGGSAGPAVA-AFSTT-RCYTQSDKVLQPSITTRATTTAAVGGEHGCFSISRFARCEDRATAVMLSGGGGDGG-------RDTALPRNFAPRIFRRGGDGSHPGSSGSKSGSNLVGRIFGGLDSDSGSSGPPRSGGLG-RGXXXXXXXXXNDGENTEDSKGDMMALGAAHVMXXXXXXXXADSSQPESTLRGGYRRRSVFGRRPVQRQAGG--SGGQGGITATNALLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTVAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAITFLIGPR---RLNPYTGQPYIVDESFKLGWPRLGKSPPAR 428
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK43_ECTSI) HSP 1 Score: 418 bits (1075), Expect = 1.100e-137 Identity = 208/218 (95.41%), Postives = 212/218 (97.25%), Query Frame = 1
Query: 673 SGSQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPRLGKSPPA 1326
SG QGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNS+SFSSVGPVVE MGKAKFVTVY LAGIAGNVLSC+VNPRTPSVGASGAIFGMVGAWGAFCLMNETV+GRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPR KRRLNPYTGQPYIVDESF LGWPRLG+SPPA
Sbjct: 51 SGGQGGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTLAGIAGNVLSCIVNPRTPSVGASGAIFGMVGAWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRFKRRLNPYTGQPYIVDESFKLGWPRLGESPPA 268
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q0_9STRA) HSP 1 Score: 171 bits (433), Expect = 8.470e-45 Identity = 92/195 (47.18%), Postives = 128/195 (65.64%), Query Frame = 1
Query: 694 TATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVD 1278
+ TNVLLA+ A +Y Q P IT G K+ I +GQWYRL+TPI LH + HL +NS+S ++GP VE GK + +++YVL+G++G + SC NPR SVGASGAIFGMVGA F N +G + R L+++ +TV+IN + G+ SQIDN GH GGF+ G +T+L GP ++ +PY+G P +VD
Sbjct: 19 SVTNVLLAITAAIYGAQWLVPGITMQGAKITSKI-MRGQWYRLVTPIFLHANLAHLLMNSMSLYNIGPFVEQWFGKRRMLSIYVLSGVSGVLASCYWNPRASSVGASGAIFGMVGAAACFFASNRNELGAG-ADRGLQSILRTVVINTIMGLQISQIDNAGHAGGFVAGFVLTYLFGPNMRWVGSPYSG-PRLVD 210
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z519_CHLVA) HSP 1 Score: 155 bits (391), Expect = 6.430e-39 Identity = 88/198 (44.44%), Postives = 128/198 (64.65%), Query Frame = 1
Query: 688 GITATNVLLALNAIVYLFQM-RYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVD 1278
G AT+VLL NA+++ Q+ A+T G K+ A+ GQW+RLLTP LHG+ HLAVN S +++GP VEGA G +F+ +Y+ A +AGNV S + P++ S+GASGA+FG+ GA + N + G+ S R LR + QT+++NVVYG+ S++IDN GH+GG +GGA L+GPR + P ++VD
Sbjct: 35 GRRATDVLLVSNALLFGLQLLTKQALTVWGVKVN-ALVVAGQWWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVASFLGAPKSVSLGASGAVFGIGGALAMYFYRNRDIYGKT-SDRVLRQLWQTLVLNVVYGLSSTRIDNWGHMGGLVGGALAGLLLGPRFQATTLPGKRGKWLVD 230
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENP6_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.420e-37 Identity = 86/202 (42.57%), Postives = 131/202 (64.85%), Query Frame = 1
Query: 700 TNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGWPR 1305
T L+ N +Y Q+ +P+IT+ G K + I + + YRL++P+ LHG HLA+NS S +++GP VE G+ +F+ Y+ AG+AGN+LS ++P PSVGASGAIFG+VGA+ F N+++ G++ +R L ++ QT + N++YG S QIDN GH+GG LGGA + + GP+L P GQ ++D+ N+ PR
Sbjct: 199 TQRLVWTNVAIYGLQVVFPSITRWGAKRSDLILSRRELYRLISPVFLHGGVVHLAMNSFSLNNIGPEVERCFGQGRFLGTYLAAGVAGNLLSAYMSPN-PSVGASGAIFGLVGAYAVFLGRNKSLFGKSG-ERGLASLRQTFVTNLIYGFMSPQIDNWGHIGGALGGATIAYHFGPKLYLAALP-NGQRIVLDKP-NIRVPR 396
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I841_GUITC) HSP 1 Score: 153 bits (387), Expect = 3.320e-37 Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1
Query: 679 SQGGITATNVLLALNAIVYLFQM-RYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRT-PSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMG-SSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDE 1281
S+ T+ L +N +V+L Q+ A+ +AG K+ I + Q+YRLLTPI LHGS +H+ VN S +++GP VE G + V Y+LAGIAGNV S P+ PSVGASGAIFG+VGA G F ++ + G + S+ L + QT ++N++ G+ S IDN GH+GG +GGA + +LIGP LK + + TGQ +VDE
Sbjct: 138 SRSSRAVTDFFLIVNVVVFLLQLLTQGALLEAGAKITSMIVYERQYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLAGIAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQDIFG-DRSRYMLNGIIQTCILNLIIGLAPGSNIDNWGHIGGAIGGAVVAYLIGPNLKVKRS-LTGQ-VLVDE 338
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFU7_9RHOD) HSP 1 Score: 151 bits (381), Expect = 6.360e-36 Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1
Query: 700 TNVLLALNAIVYLFQMRY-PAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMG-SSQIDNMGHLGGFLGGAAMTFLIGPRLKRRLNPYTGQPYIVDESFNLGW 1299
T+ L AL + +L Q+ PA AG K+ AI Q G+WYR TP+ LHG+ HL VN S S+GP +E G ++ T+Y+L+G++GN+ S + N PSVGAS AIFG+VGA AF N G+ +SQR LRN+A ++N+ G+ +S+IDN GHLGG LGGA L GPRL L+P TG ++VD GW
Sbjct: 203 TDWLAALTILSFLLQLLAGPAYVMAGAKVNAAI-QAGEWYRFFTPLFLHGNTLHLIVNLSSLKSLGPQIEATYGHRRYATLYLLSGLSGNLFSFLFN-TAPSVGASSAIFGLVGAMAAFYACNGDWFGQEHSQRMLRNIAWVTLLNLGQGLAPASRIDNFGHLGGLLGGAVFGILFGPRLY--LDP-TG--HLVDIPLAQGW 397
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU80_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.080e-35 Identity = 82/183 (44.81%), Postives = 110/183 (60.11%), Query Frame = 1
Query: 685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRL 1233
G + T+ L+ N I+Y QM P IT+ G K + I Q Q YRL TP+ LHGS HL +NS S ++GP VE G +F+ YV AGIAGN+ S P PS+GASGA+FG++GA+ AF N GR+ Q R V+ T+M+NV++G+ S IDN H+GG + G M GP+L
Sbjct: 111 GKYSWTSRLIVTNVIMYGLQMMMPGITRMGAKRSDMIMQGQQLYRLFTPVFLHGSILHLMMNSFSLQNIGPEVERNFGSGRFLATYVAAGIAGNMASAYYTPN-PSLGASGAVFGIMGAYYAFLSNNSQFFGRSGEQMMGR-VSSTLMMNVIFGLVSPSIDNWAHIGGAVAGVGMAMTFGPKL 291
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK25_ECTSI) HSP 1 Score: 144 bits (362), Expect = 6.620e-35 Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 1
Query: 685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRR 1242
G +TATN LL +N +V+L Q + P++T + +K+A AIT G+WY HLA NS++ ++G E MG KFV +YV +G++GNVLSC+V+P TPS+GASGAIFG++GA L + + + +V QT V+ G+ ID+ GHLGGF+GGAA+T LI PR R+
Sbjct: 75 GVLTATNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYXXXXXXXXXXXXGHLAGNSMALFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLTPSLGASGAIFGLLGAEAMIHLAGP----KASMPLFVSSVGQTAFFAVLVGLLVPNIDHWGHLGGFVGGAALTLLIQPRSPRK 256
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Match: Rhomboid (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y9_9PHAE) HSP 1 Score: 144 bits (362), Expect = 7.790e-34 Identity = 80/186 (43.01%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 685 GGITATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSISFSSVGPVVEGAMGKAKFVTVYVLAGIAGNVLSCVVNPRTPSVGASGAIFGMVGAWGAFCLMNETVMGRNNSQRALRNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRLKRR 1242
G +TATN LL +N +V+L Q + P++T + + +A AIT G+WYRL+ HLA NS++ ++G E MG KFV +YV +G++GNVLSC+V+P + S+GASGAIFG++GA L + + + +V QT V+ G+ ID+ GHLGGF+GGAA+T LI PR R+
Sbjct: 177 GVLTATNALLVINFLVFLQQQQDPSVTTSFYNLAYAITDHGEWYRLVXXXXXXXXXVHLASNSMALFNIGRGTETYMGTEKFVALYVCSGVSGNVLSCIVDPLSASLGASGAIFGLLGAEAMIHLAGP----KASMPLFVSSVGQTAFFAVLVGLVVPNIDHWGHLGGFVGGAALTLLIQPRSPRK 358 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig683.14953.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig683.14953.1 >prot_E_fasciculatus_S2_contig683.14953.1 ID=prot_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=444bp MVTLLGAILVLTGGSAGPAVATAFSTTPSCFPQSDKFLPPSISTRAATTVback to top mRNA from alignment at E_fasciculatus_S2_contig683:1790..10164- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig683.14953.1 ID=mRNA_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=8375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:1790..10164- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig683:1790..10164- >mRNA_E_fasciculatus_S2_contig683.14953.1 ID=mRNA_E_fasciculatus_S2_contig683.14953.1|Name=mRNA_E_fasciculatus_S2_contig683.14953.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1332bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig683:1790..10164- (Ectocarpus fasciculatus EfasUO2)back to top |