mRNA_E_fasciculatus_S2_contig682.14945.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.210e-67 Identity = 118/158 (74.68%), Postives = 128/158 (81.01%), Query Frame = 3
Query: 66 TAVDTSEISAGSKRTSRWNRAFRGLALEMVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGELVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
TAV TSE+ GSKR+S W RA L EMVMLG QDVG TLAQ G SK R+TPKALKRG +QQSGS+ FLVLV+S VVGVA+ +LV+F SGFKCMWYDL HPVQFAVLLMMPALFFG+NRIFG LDKAAYARLSRAVTAWMDEKRQVHRI
Sbjct: 64 TAVHTSEVCTGSKRSSLWKRAQPALPSEMVMLGSQDVGRPLTLAQAPGHSKIYRQTPKALKRGAGFQQSGSHGRHFLVLVISAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 221
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE) HSP 1 Score: 204 bits (519), Expect = 4.480e-59 Identity = 102/130 (78.46%), Postives = 112/130 (86.15%), Query Frame = 3
Query: 150 MVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGELVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
MVMLGCQDVG SATLAQ SG SK+ R+TPKALKRG +QQSGS+ FLVLV S VVGVA+ +LV+F SGFKC+WYDL HPVQFAVLLMMPALFFG+N IFG LDK AYARLSRAVTAWMDEKRQ+HRI
Sbjct: 1 MVMLGCQDVGRSATLAQGSGYSKSFRQTPKALKRGAGFQQSGSHDRHFLVLVTSAMVVGVAESKLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHRI 130
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI) HSP 1 Score: 134 bits (337), Expect = 5.460e-34 Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3
Query: 306 MSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
MSVTVVGVA+ LVD PSGFKCMWY+LSHPVQFAVLL+MPALF GVNR+FGMLDKAAYARLSRAV+AWM+EKRQV +I
Sbjct: 1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.220e-24 Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 3
Query: 210 QSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHR 536
+++ RK P AL+R + + VMS T V + + LV+FPS F+CMW DL HP QFA++ +M AL FGV+RIFG LD AAYARLSRAVTAW++E+R H+
Sbjct: 6 KTREARKRPPALRRSHL----------LVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQ 105
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.440e-16 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 3
Query: 228 KTPKALKRG-GVYQQSGSNSCGFLVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAV 500
KT KA KR G+ ++S + MS +VG+ + LV+FPSG C W DL HP QFAV+ +M AL FGV++IFG LD AAYARLSRAV
Sbjct: 6 KTRKARKRRPGLRRRSHL----LVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 9.940e-16 Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 3
Query: 177 GGSATLAQHSGQSKNCRKTP-KALKRGGVYQQSGS---NSCGFLVLVMSVTVVGVAKGEL-VDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
G SAT Q S K C+ + K R + +++G S L+ ++ G+ G L VD PSGFKC WY+L HP QFA+L +M + + +NR+F +DK YARLS A AWMDE R ++
Sbjct: 86 GPSAT--QPSRHFKRCQSSSLKREARRSIGKRTGGLTMMSRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQV 209
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.010e-15 Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 3
Query: 294 LVLVMSVTVVGVAKGELV-DFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHR 536
L+ M+ G +G +V D PSG KC WY+L+HP QFA+LL+M L VNR+F DK Y RLSRA AWMDE R R
Sbjct: 142 LLATMAAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLSRATDAWMDEMRHTRR 223
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6F6_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.580e-15 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query: 294 LVLVMSVTVVGVAKGELV-DFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQ 527
L++ ++ +G+A+G L+ D PSG KC WY LSHP Q+AVL+M +GVNR+F LD A ARLS A WM ++R+
Sbjct: 2 LLVAIAAIKLGLAEGTLLFDLPSGLKCAWYSLSHPAQYAVLIMTLGCLYGVNRLFDKLDSAMNARLSCATRNWMQQRRE 80
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.370e-14 Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 3
Query: 294 LVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVH 533
++ ++SV V V +G+ L++FPSGF+CMW DL H +QFA+LL+M + +GVNR+F D+A Y RL+ A ++E+R H
Sbjct: 60 MLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G972_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 5.210e-14 Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 3
Query: 342 LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQ 527
L D PSG KC WY+LSHP Q+A L+M +GVNR+F LD A YARLS A WM ++R+
Sbjct: 15 LFDLPSGLKCAWYNLSHPAQYAALVMTLGCLYGVNRLFDRLDSAMYARLSCATRNWMQQRRE 76 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig682.14945.1 >prot_E_fasciculatus_S2_contig682.14945.1 ID=prot_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp MVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLVback to top mRNA from alignment at E_fasciculatus_S2_contig682:21935..28675+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig682.14945.1 ID=mRNA_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:21935..28675+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig682:21935..28675+ >mRNA_E_fasciculatus_S2_contig682.14945.1 ID=mRNA_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:21935..28675+ (Ectocarpus fasciculatus EfasUO2)back to top |