mRNA_E_fasciculatus_S2_contig682.14945.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig682.14945.1
Unique NamemRNA_E_fasciculatus_S2_contig682.14945.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 2.210e-67
Identity = 118/158 (74.68%), Postives = 128/158 (81.01%), Query Frame = 3
Query:   66 TAVDTSEISAGSKRTSRWNRAFRGLALEMVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGELVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
            TAV TSE+  GSKR+S W RA   L  EMVMLG QDVG   TLAQ  G SK  R+TPKALKRG  +QQSGS+   FLVLV+S  VVGVA+ +LV+F SGFKCMWYDL HPVQFAVLLMMPALFFG+NRIFG LDKAAYARLSRAVTAWMDEKRQVHRI
Sbjct:   64 TAVHTSEVCTGSKRSSLWKRAQPALPSEMVMLGSQDVGRPLTLAQAPGHSKIYRQTPKALKRGAGFQQSGSHGRHFLVLVISAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 221          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 4.480e-59
Identity = 102/130 (78.46%), Postives = 112/130 (86.15%), Query Frame = 3
Query:  150 MVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGELVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
            MVMLGCQDVG SATLAQ SG SK+ R+TPKALKRG  +QQSGS+   FLVLV S  VVGVA+ +LV+F SGFKC+WYDL HPVQFAVLLMMPALFFG+N IFG LDK AYARLSRAVTAWMDEKRQ+HRI
Sbjct:    1 MVMLGCQDVGRSATLAQGSGYSKSFRQTPKALKRGAGFQQSGSHDRHFLVLVTSAMVVGVAESKLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHRI 130          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.460e-34
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  306 MSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
            MSVTVVGVA+   LVD PSGFKCMWY+LSHPVQFAVLL+MPALF GVNR+FGMLDKAAYARLSRAV+AWM+EKRQV +I
Sbjct:    1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.220e-24
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  210 QSKNCRKTPKALKRGGVYQQSGSNSCGFLVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHR 536
            +++  RK P AL+R  +           +  VMS T V + +   LV+FPS F+CMW DL HP QFA++ +M AL FGV+RIFG LD AAYARLSRAVTAW++E+R  H+
Sbjct:    6 KTREARKRPPALRRSHL----------LVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQ 105          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-16
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  228 KTPKALKRG-GVYQQSGSNSCGFLVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAV 500
            KT KA KR  G+ ++S       +   MS  +VG+ +   LV+FPSG  C W DL HP QFAV+ +M AL FGV++IFG LD AAYARLSRAV
Sbjct:    6 KTRKARKRRPGLRRRSHL----LVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.940e-16
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  177 GGSATLAQHSGQSKNCRKTP-KALKRGGVYQQSGS---NSCGFLVLVMSVTVVGVAKGEL-VDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHRI 539
            G SAT  Q S   K C+ +  K   R  + +++G     S   L+  ++    G+  G L VD PSGFKC WY+L HP QFA+L +M  + + +NR+F  +DK  YARLS A  AWMDE R   ++
Sbjct:   86 GPSAT--QPSRHFKRCQSSSLKREARRSIGKRTGGLTMMSRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQV 209          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-15
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  294 LVLVMSVTVVGVAKGELV-DFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVHR 536
            L+  M+    G  +G +V D PSG KC WY+L+HP QFA+LL+M  L   VNR+F   DK  Y RLSRA  AWMDE R   R
Sbjct:  142 LLATMAAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLSRATDAWMDEMRHTRR 223          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6F6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.580e-15
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  294 LVLVMSVTVVGVAKGELV-DFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQ 527
            L++ ++   +G+A+G L+ D PSG KC WY LSHP Q+AVL+M     +GVNR+F  LD A  ARLS A   WM ++R+
Sbjct:    2 LLVAIAAIKLGLAEGTLLFDLPSGLKCAWYSLSHPAQYAVLIMTLGCLYGVNRLFDKLDSAMNARLSCATRNWMQQRRE 80          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.370e-14
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 3
Query:  294 LVLVMSVTVVGVAKGE-LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQVH 533
            ++ ++SV  V V +G+ L++FPSGF+CMW DL H +QFA+LL+M  + +GVNR+F   D+A Y RL+ A    ++E+R  H
Sbjct:   60 MLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140          
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G972_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.210e-14
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  342 LVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNRIFGMLDKAAYARLSRAVTAWMDEKRQ 527
            L D PSG KC WY+LSHP Q+A L+M     +GVNR+F  LD A YARLS A   WM ++R+
Sbjct:   15 LFDLPSGLKCAWYNLSHPAQYAALVMTLGCLYGVNRLFDRLDSAMYARLSCATRNWMQQRRE 76          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig682.14945.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Uncharacterized2.210e-6774.68protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.480e-5978.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.460e-3483.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.220e-2450.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.440e-1652.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.940e-1640.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.010e-1551.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.580e-1548.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.370e-1445.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.210e-1454.84protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig682contigE_fasciculatus_S2_contig682:21935..28675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2057
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003650.1
Cds size393
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig682.14945.1prot_E_fasciculatus_S2_contig682.14945.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig682 25362..27160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842339.1707895-UTR-E_fasciculatus_S2_contig682:21934..220201696842339.1707895-UTR-E_fasciculatus_S2_contig682:21934..22020Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig682 21935..22020 +
1696842339.1897738-UTR-E_fasciculatus_S2_contig682:25298..253611696842339.1897738-UTR-E_fasciculatus_S2_contig682:25298..25361Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig682 25299..25361 +
1696842339.244094-UTR-E_fasciculatus_S2_contig682:27160..286751696842339.244094-UTR-E_fasciculatus_S2_contig682:27160..28675Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig682 27161..28675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842339.2043724-CDS-E_fasciculatus_S2_contig682:25361..254831696842339.2043724-CDS-E_fasciculatus_S2_contig682:25361..25483Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 25362..25483 +
1696842339.215307-CDS-E_fasciculatus_S2_contig682:26267..263351696842339.215307-CDS-E_fasciculatus_S2_contig682:26267..26335Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 26268..26335 +
1696842339.224556-CDS-E_fasciculatus_S2_contig682:26699..267791696842339.224556-CDS-E_fasciculatus_S2_contig682:26699..26779Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 26700..26779 +
1696842339.2340562-CDS-E_fasciculatus_S2_contig682:27037..271601696842339.2340562-CDS-E_fasciculatus_S2_contig682:27037..27160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 27038..27160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig682.14945.1

>prot_E_fasciculatus_S2_contig682.14945.1 ID=prot_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
MVMLGCQDVGGSATLAQHSGQSKNCRKTPKALKRGGVYQQSGSNSCGFLV
LVMSVTVVGVAKGELVDFPSGFKCMWYDLSHPVQFAVLLMMPALFFGVNR
IFGMLDKAAYARLSRAVTAWMDEKRQVHRI*
back to top

mRNA from alignment at E_fasciculatus_S2_contig682:21935..28675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig682.14945.1 ID=mRNA_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:21935..28675+ (Ectocarpus fasciculatus EfasUO2)
GTCCTTTGCTTGGTCTTTGTGTCTGGCGTGCTGTGCCCACGACGGAGCGT CATACATGGGACACTACGGCAGTAGATACTTCTGAGGTGAGTGGTGCTAC AGATTCTCTGGCCAGATCCCTAGCGCGAATCATTTTTAGTGGAGCGCGCT GCAGAGAAGCGGAGAACAGAGCCGGCATTGCAGCCCACACCTGCATGGAG ATTGACCACGATAAGCTATTATGCTGCCTCTTTAGGTCAACACTCACAGG GAGAACGCGGAACAGAGCAGGGGAACAGAGGATGAGAGGGTGCATGGGTG GAGTAGCAGATGAGAGGTATAGTCTACGATCGGTGATTCATGAGATCTTG TTCCTGCCGGTTGTGCATATGCTACGGTCGATCATGCGTGTGCTATGTAT GTATGACGTCAAACAACGAAGTACACTACTGTAGAAGCAGCGCTGCTTGC TGCGCTGCAAAAGGTAGGTATCTACAGGGACCTCCCGTGCTGAGGTGATA GAGCGAGGCCTGGAAAGAATCGTAGGGAAGAATAGCAGTCTGACCAGAGA GAATTAAGCCACCCAGGGTGGTCGGCGCATGAATACCTGAAGGTGGATTT GTGCATCTACAGAAGCAGCAGCAGGAGAGTGTTCAGAACTGAGACACAAT TGAGACAACTGCTGGTAAGTCTCTGTCGCGCTCTGCCGTCGTCCAATTTT CGCCACAACAGCCTCGTTTGGCGGGGGGCGTGGAAGTCCCTTTGACTGGA AAGCATGTTCACGTGTGTTTGTTCCGTCTGTTGTCGGTGGTATTCACGTT TTCGGTGTACCGGTGGTGACGTGAGATAACACCCCCCTCCTTGGACCGAT TTTCAAAGGCCAAGTCACTCCACGAAGAGAAAGGATGTCAACAACAAAGG CAGACGTCTCAAAGGATCTCAACGAGTTGCCATTTCCGGCACCGCCACTC GCTGTTCTGTGGAGCAATCGTGCTTCGAAAATTGGTCCAGGAGGTGTGAT ATCTCACCTACGGCAGGTACCTACCGTATGTCCGAGCGCCCGGTGTATGT ACTAGCAGGGGGAGGATGGATTTTTTCCCCGTCCGCTACAGCGATCGCAC GGCGGTGGTTGTTCACATGTTCGTGTCCTCTTGACTCGTGACCTCCCCTC GGGACCCTGCAGCTCGGGAATGATTTTCGCGTTCTCCTCTCCTTGCATTG TTTTCGTTTTGGATCAGTTTTTAGCGTAGAAGATTGTAGCCCAAACAGCG TCGGGGGGGGGGAGAGACCAGGGCCAAAGGCGGTGATAGAGGTGAACAAG GAAAAACACGATGGGTTTTTTGCTGCCCGGGAAAGCTGGGCATTGAGGAA GTGTGGAGCCAAATACAAAGGAACGTTCATTAATATGCGGAAAGTACCCG AGTTGGGACAGCGCCCCGTTTGCAATCCCTTCCTCTTTTTTGGGGTGTTC GGCACTCGATCATGGTCGGCAGGGATCATGTGAAGGTCACCTGGATGTGC GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGAC CCAGGGAAGTTGGGCGGCTGGGCCCCCGGCAAGCCTCGTCGCTCTTTTTC CTCACTCTCTCTCTACTCTGTCTAATACCAGGCATATATCGAAGTCCTGG GATCAATCTTTCTCTCCGCTTCTGACCACATGCAGCCCGCCCTCGAACCC GATCCGACCTGATAGTTATTCACTGAAAGCAAGGAGAGTAGTGAGCAGCG AGAAAGAGAGAGCGTGGGACCTTGCTGGGGGCCCCGTCTACCTACTTCCC TGTCAACACAACTGCGTGCAACCCCCAGCCTCTCCGTAGGTCAGCCTCTC CGTAGGTCCAGAGGTCCGCATGCGGCAAGACCGTATGGCATCCACACACA TGGTGGCCACTGCACGCTGCTAGAAAATGCTGCATTGCAATGGTTCTGTG AGCGTGTCACTTAATTTTTCATGCTAGGTCAGGTGCTGCGGAAGGTTAAG GTTGCTTTTCAAAAGTACAAAGTCAAAGCCAACTGCGGGTAAAGTGCAGC GAGGCAGTCCAAACAAAAGCTGCTGGGCACGACTGAGGATGAGGTTCGAA CGCTACCAAAACCTGTTGATGCTCAGCTTAGGGAGTGCGCTGATATATTT CACAGCTTGCGTGCGGTGCACGTGGCCTATCGTTCTACCTGTTTGGCGAC CAGGTCACCTCGCAGCAGCTATTCCGCCGGGTTTGGGTGCTGCTCAACCT CGATTCGGCATGTTGGTGCCGCAAAACAAAATAACGTTCCAACGACGCAG CAAGCCATCACGACAGAAAAATCAATAGCGCCGTCCACAGTGTGTGTGTT CAATTTCGGTGCGAAGCGTTTTTTCGTTTTTGCGGGTCCTTGAAGAGCTT GACGAACCGACCTCTATCCACAGTTAAGCGTCCGGGATAGACTAGCAGAG AACTCATAGCGTTCACGCGAACACACGTCCCTGCGGTTCTTTCTCCTTGT TTTCAAAGCGAGATCAACACGCTAGGTTTTGACATGCTACTGTATACACA TCGGTTTCATGGAAATCAAAACCGTCGGTTGCGTCAGCGCGATAGACCGA GTATGCCGTAGCCACCCCGCGACCAGTGTCTCGCTTTTCCGGGCACCGTC GCACATCATCACACGCGTCCAATTCGAAGTTGTCGTTCTTCTTGAGATAC CTTCCCGTTCGGTCTCCCGTCTCTGAACAGCAAGAAGCTGGCAGTAATAG CAGTGCTGTTGCGGGTGGGCCGTTAGGCAGTACTGGGTTGCCGCCTCGAA CGTGCTGCGATGATCTGGAGTCTAAAAGGCGAAGCAGGCGACCCTTGGCA TGACCTGCTGTGTGCCAGTCTGCTCGATGCTTGTCTACCTGCAAGCAACG GCAAGACAGCGAGGGGTTGGACGTTTTCTTCAAGAAAAGGCCTCTCCACG GCAGTGTGGTCAGATTTCAAACTTCAGTTCCTGTCATCGCGACGGTGGGC GAAATACGTCCAAAGTTTCCACCAAGTATGCCCCCAACGATCGCAAGAAA TGAACTGGAATCCCTCAGCAGCGGAAAGCAAAGAGGTTTCGCAACTAATG GTGTACGTTCTCCCTGTGCAAAGGGTAGGATGCGCGGCACGCTGACACAA ACATAGTTTCCGTTCTAGAGCCAAATACCCAACCATTTATTTGCTGCTCC TCTCGCATGGGCGCAGACCACTTTGCATGAACCTGTCAAGTTTCACTACT GTAGCGCTCCCCCCGTCTATGAAAAGCGTGTTTGTAAAGATAAGGCAGAG AGAAGCGGCAGCTGTGTCTATATTTGCCCCCATTCCCCTCTCGATAACTT GCTCTGATTCCCAGATTTCTGCTGGCAGCAAACGAACGTCGCGGTGGAAC CGAGCGTTTCGTGGACTTGCATTGGAAATGGTGATGCTAGGTTGCCAGGA CGTTGGTGGCTCAGCGACTTTAGCCCAACACTCTGGTCAGTCGAAGAACT GCCGGAAGACCCCAAAGGCCCTCAAGAGAGGTGGCGTTTACCAACAAAGG TACACGCTCAAGCCAGATTTTGAAGTGACGCGATTAACCCGTTTTGCACC TGGCAACGCGTGCGGGAGCATTGCGCATACGTGTATCACTTGAATTCCGT GGTACGAGAAACGAGAACCTGGATGCGGACTTGAGTTAACCAGAGCGCGT GGACGTGTATTCCACCGCACAGCGGTAGTTGTGGATTTTGGGAGGAGGAC ACGGGGGCTTGCTGACGAGCCTACTTTGTGCTTTCTGCCGAAGTCCTCCG CCCTCGCATACGTTTCCTTGTTCAGCAACAAGACTTGTCTTGCGGGAAGC GATTGCTTCAAGACACTCTCACCCGGCGAGCATGGTTCCGACTTTTTGGT CTTGATCTTCTTCACAACCAGGCGGTAATGCTTAAGCGCAACCGTATGGC ACACGTAGCTGTTGTTGCATTTTGGAGACATGACGGCTTGGGGTCCTCCG AGGTTTTCCTACACGCTCGCTGCGTGCCGACCGCCTACGTAGCTCCATTT CCCCTGCCGCCAGGGTGTCGCTAAACGAGAGATTTCGGCTCAAATGTAGT GCCCGCTGGCTGGGTCTTGTTTGTTCTCTCGTGGTTGTGAGCCCTCTCTG TATCCGCGAGATTATCCACACCCTCGCTGCTTCACCAACCGCCTACGTAG CTCCGCTTTTTCCGCCGCCTTGGTGTCGCTATATCGACCGATACCTGCTC AATGTAGTGCCTGCTGGCTGGGTCTTGTTTACCTCCCGTGGTTGACGTGA ACCCTCTCTGTACCCGCTCGTCTGTACCACCAGTGGATCCAACAGCTGCG GCTTCCTGGTGTTGGTGATGTCAGTCACAGTCGTGGGAGTCGCGAAAGGC GGTGAGTGATGCACCCGTGCTGCTTGTAGGAATCGGCCGCCTTTAGTCTA TGCGCGTGCCATGAGCACGTTCTGTTACTGGGACCTCGGTTGTGTATGTG GTCATAATTGTCTCTTTTTTCCCGGTATGTTTAAGGACACATCGGACGGA TACCGCAGGGGGACGCCATTTACAGACTACATGGTAGTGGGGTTGTGCGT CGTGCTGTTAGTATCGACCGCACTTACCGGCCGCCCAATTTTGAAGGGTC GGTCTCCCTGCGTGTGTGTATGCGTGCGTCTGTGTGTGTCTCCTTTTATC GAACAACGCCATTTCGTGCATGAGTTTGCGGTCCCTTCACCTGTAAGTTT GCCGTACCGTTGCAGAGCTGGTTGACTTCCCGTCAGGGTTCAAGTGCATG TGGTACGACCTGTCGCACCCTGTTCAGTTCGCGGTATTGCTGATGGTGAG TGCGCTCTTGGGTTGGTTATGCCCATAAGCTTCAACGTAGACTGTGTTGT CAGGCCGAATTGTAGAGCGTGCTGTACTGGTGGTGCATCCCGGCGTCTTG CACGCTTGCTCTGTTGCTGCTGTCCGCCTTTTGATGCTCAAAGTCAAGAG GCAGTACCATCGATGGCAATAGAACAGACCCGCATGGCATGTATCGTAGT CCGAGCTCATCTTTTTCTCCGGCACGCCTAATGTCGCTTGGAAACCCGTG CAGATGCCCGCGCTTTTCTTCGGCGTCAACCGGATTTTCGGCATGCTCGA CAAAGCCGCGTACGCTCGGCTGTCTCGCGCCGTGACCGCTTGGATGGATG AGAAAAGGCAGGTGCATCGGATTTAGTTCGAGTCCAGGCGGTTCCAAGCA CCGGACTTGCATGCTCTGTTCGAGTTGGGACATTTTTCTGTCTCTTATGG AAAAAAACCGTGGGGGGTCGAAGAAAAACCAAAGGGGCAAGTTGCAACGT GCATTTTTTACTTCTAAGTCCAATGGCGGCTTGTGTTCATGCCAAAATTT GCACGACGGTCAGGTCAGGCGTTCGTGTTTTACTCGCTGTACGTAGTTTA TCGTTTCCAGCGTTTTGCGTCCCAATATGACGAGCGACCGCGCAAGATTG CTGGTGTTCGCTGGTATCTTACATTTGTTGGAGGTGCGTGCCCAAAGGGT AGGGAAACAATTTTTTTATGTTCCATAGCGTCGAAAGTTGCTCAGTGCCG TACTTGAGTCCTGGCTGCACGTCTGCCAGTCTTCGAGACGCCAGCCATCA ACTCATAAGGCGTTTTTGACATTTTCTTTAGTTTTACAAAAGAGGCAACG CGCCAGTTTTACGAGGGAGACAAACCGCCAGTTTCATGGGGAAGGTAAAG CGCCAAGCGCGTATAGTCTGTAGGGCGGGAACGCATCTCGGCATGACATC AGGTGATCCTAGGAAGAGGACGTCTCGTCCCTGTTTGATGTATTGATCTT CGAGAGTGCTTGTGTATACATGGTGGGTGGCAAGATGTAGTTGTCCTAGC AGATGTGTATCGTAGTTGTTGTTCTGGTGTGGCGTGGCGGAATGCTTCGT GCGATTTTGTCGGATGTGCCTGCGGTGCCAGGCATGTTGTTGTGGTTCTT GTCGAGGCGATTTCCACCACATGATGAGCTGACCGCATTCAGCAACGCAA TTGTCAGTTGGCAATCATCCGCGGTGTATCTTCCATTGATTGCCTCTTGT TTTTTTTTTGCGTGAGTTCCACCCCTCCTTTTGGTGGTCCTCGTGCATTT CGGGTTCGTGCGTTGCTTCTGGTATGGACACGAAACAGGCCGTCATACAC CCTGTGATACTTGCTGCGAACGGCTCCAGTATCCATAACTACAGCAGTAA GGAGTTATGACCCATTTGAGAGTTTGATGAGCGTGGGACGTCGCGTCCGT CGCGCAGACCGTTTTGAGGCTCTCGTTGCCGACAGATCAAGATTTCCTTC CCTAACCAGCCTGACCGGATAGTCTCTCGAGCAACGAAGCGCTGACACAG CGGCTGGTGCTCCGAGCCGACCACCCAGATTGTCGTCTTCGTTTTTTTTT TCGCCTCGGGTTAGAGAGATGAGTGGATTTCGAATGGGTCGCCCACCCAG CAAGGTTTTACCTGGTCGGTAGGGGCCGATGCAAACCGTTTTGACACGAC CGAGTGCAACGAGAGAGTCGTACAAAAATTACCAGCACGCCTCGTATATT GTCGGCAATGCGTCTAGAGTAAGGCTGACAGGGGATTATAGTTGACGTGA GAGCCATATGCCTCGAGGAACATAGGCGAATCGGAAAGCTAACTTTCGTT CTCCGCGTACGTTTTATCTGCATCATTTCTCATGTTTGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig682:21935..28675+

>mRNA_E_fasciculatus_S2_contig682.14945.1 ID=mRNA_E_fasciculatus_S2_contig682.14945.1|Name=mRNA_E_fasciculatus_S2_contig682.14945.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:21935..28675+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGATGCTAGGTTGCCAGGACGTTGGTGGCTCAGCGACTTTAGCCCA
ACACTCTGGTCAGTCGAAGAACTGCCGGAAGACCCCAAAGGCCCTCAAGA
GAGGTGGCGTTTACCAACAAAGTGGATCCAACAGCTGCGGCTTCCTGGTG
TTGGTGATGTCAGTCACAGTCGTGGGAGTCGCGAAAGGCGAGCTGGTTGA
CTTCCCGTCAGGGTTCAAGTGCATGTGGTACGACCTGTCGCACCCTGTTC
AGTTCGCGGTATTGCTGATGATGCCCGCGCTTTTCTTCGGCGTCAACCGG
ATTTTCGGCATGCTCGACAAAGCCGCGTACGCTCGGCTGTCTCGCGCCGT
GACCGCTTGGATGGATGAGAAAAGGCAGGTGCATCGGATTTAG
back to top