mRNA_E_fasciculatus_S2_contig682.14944.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig682.14944.1
Unique NamemRNA_E_fasciculatus_S2_contig682.14944.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig682.14944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU61_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.330e-57
Identity = 188/331 (56.80%), Postives = 203/331 (61.33%), Query Frame = 1 
Query:   13 ALKAALAAPLLLPQGGGGYMLPRQDF-------FSPANYGGVDSPLGLGGKVAPAVLEAAGSLAAAXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVARTTIVAIMYIAGTATSLFVAIRRMLS-PGSRSGAXXXXXXXXXXXXXXXXXXXSWSVGRVLGGLIHG-----RGTPGARTAAGPRALRGAPISPSAPS--AVIIVPTVFPAAGATSPVAGSTAATSPLPATTPAIATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVPARISRIVSNTDRFVAMAHENMDDALVAYECL 960
            AL A L  PLLLPQ  GG+MLPRQ         FSPAN       L  G KVAP +L A GSL  A             SAQPTSADDVGLG GETCDPEDA+C+GD+TDE+TFS+L+W+RTLFVW+SVART IVAIMYIAG ATSLFVAIRR LS  G  SG XXXXXXX            SW VGR+LG LI G      GT GARTA GPR L G+  +PSA    AVIIVPTVF A                               XXXXXXXXXXXXXXXXXXXXX   RRVP  +SRI+SNTDR V  AH NMDD L A E L
Sbjct:   11 ALAAPLLLPLLLPQEAGGFMLPRQFHHVRQDVSFSPANM-----LLRFGVKVAPVILMA-GSLPVAASAATAGGSISS-SAQPTSADDVGLGPGETCDPEDADCQGDDTDEITFSMLHWVRTLFVWYSVARTAIVAIMYIAGAATSLFVAIRRTLSLSGPSSGXXXXXXXXSS----------SW-VGRLLGCLIRGVGGGGTGTQGARTA-GPRTLTGSG-APSAAXXXAVIIVPTVFTA-------------------------------XXXXXXXXXXXXXXXXXXXXXGGSRRVPPGLSRIISNTDRIVTNAHGNMDDVLAAIESL 290
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BLAST of mRNA_E_fasciculatus_S2_contig682.14944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L143_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.800e-40
Identity = 102/187 (54.55%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:   70 MLPRQDFF--SPANYGGVDSPLGLGGKVAPAVLEAAGSLAAAXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVARTTIVAIMYIAGTATSLFVAIRRMLS-PGSRSGAXXXXXXXXXXXXXXXXXXXSWSVGRVLGGLIHG-----RGTPGARTA 606
            MLPRQ        ++   +  L  G KVAP +L  AGSL  A             SAQPTSADDVGLGS ETCDPEDA+C+GD+TDE+TFS+LYW+RTLFVW+SVAR   +A MYIAG ATSLFVAIRR +S PG RS +                   SW VGRVLG LI G     RGTPGARTA
Sbjct:    1 MLPRQFHHVRQDVSFSSANMSLRFGVKVAPVIL-VAGSLPVAASSATAGDSISS-SAQPTSADDVGLGSDETCDPEDADCQGDDTDEITFSMLYWVRTLFVWYSVARAAFLATMYIAGAATSLFVAIRRRMSLPGPRSSSGGGIGGSTSGS--------SW-VGRVLGCLIRGVGGGGRGTPGARTA 176
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BLAST of mRNA_E_fasciculatus_S2_contig682.14944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.530e-22
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:  229 SAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVARTTIVAIMYIAGTATSLFVAIRRMLS 459
            SAQPTSA  V LGSGETCD EDAEC GD+TD+MTFSVL WI T FV F VART IVA +Y+AG+AT+LFVAI  M S
Sbjct:   78 SAQPTSAYHVDLGSGETCDLEDAECHGDDTDKMTFSVLCWICTFFVSFMVARTIIVAAVYVAGSATALFVAIGGMAS 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig682.14944.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G955_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-21
Identity = 79/156 (50.64%), Postives = 92/156 (58.97%), Query Frame = 1 
Query:    1 MAARALKAA-LAAPLLLPQGGGGYMLP-------RQDFFSPANYGGVDSPLG--LGGKVAPAVLEAAGSLAAAXXXXXXXXXXXXXSAQPTSADDVGLGSGETCDPEDAECKGDNTDEMTFSVLYWIRTLFVWFSVARTTIVAIMYIAGTATSLFV 438
            MAARA K A +A  LL  +G  GYM         +QDF +PA   GV+ PL   LG KVA   +  AGSL AA              A  +SA+D GLGSGE C  EDAEC GD+ DEMTFSVL WI T F W  VART I A +Y+AG+AT+LFV
Sbjct:    6 MAARAAKGAVIAVTLLQMKGADGYMPHHQQIHDVQQDFRNPAICRGVN-PLNQRLGSKVA---VPMAGSLQAASTI-----------AAGSSANDAGLGSGEACGSEDAECDGDDMDEMTFSVLCWICTFFFWCMVARTIIDAAVYVAGSATALFV 146
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig682.14944.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.330e-5756.80protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.800e-4054.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.530e-2272.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.040e-2150.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig682contigE_fasciculatus_S2_contig682:15495..19017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size963
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003640.1
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842339.10769-CDS-E_fasciculatus_S2_contig682:15494..160821696842339.10769-CDS-E_fasciculatus_S2_contig682:15494..16082Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 15495..16082 -
1696842339.1192808-CDS-E_fasciculatus_S2_contig682:17560..176641696842339.1192808-CDS-E_fasciculatus_S2_contig682:17560..17664Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 17561..17664 -
1696842339.127502-CDS-E_fasciculatus_S2_contig682:18348..184941696842339.127502-CDS-E_fasciculatus_S2_contig682:18348..18494Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 18349..18494 -
1696842339.135738-CDS-E_fasciculatus_S2_contig682:18892..190171696842339.135738-CDS-E_fasciculatus_S2_contig682:18892..19017Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig682 18893..19017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig682.14944.1prot_E_fasciculatus_S2_contig682.14944.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig682 15495..19017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig682.14944.1

>prot_E_fasciculatus_S2_contig682.14944.1 ID=prot_E_fasciculatus_S2_contig682.14944.1|Name=mRNA_E_fasciculatus_S2_contig682.14944.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=321bp
MAARALKAALAAPLLLPQGGGGYMLPRQDFFSPANYGGVDSPLGLGGKVA
PAVLEAAGSLAAAASATTAGSSISSSSAQPTSADDVGLGSGETCDPEDAE
CKGDNTDEMTFSVLYWIRTLFVWFSVARTTIVAIMYIAGTATSLFVAIRR
MLSPGSRSGAGGGGGGGGGGGGGGGSASASWSVGRVLGGLIHGRGTPGAR
TAAGPRALRGAPISPSAPSAVIIVPTVFPAAGATSPVAGSTAATSPLPAT
TPAIATTAGGGAPATTNTAGGGGSGGTAGGGGGGGRRVPARISRIVSNTD
RFVAMAHENMDDALVAYECL*
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mRNA from alignment at E_fasciculatus_S2_contig682:15495..19017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig682.14944.1 ID=mRNA_E_fasciculatus_S2_contig682.14944.1|Name=mRNA_E_fasciculatus_S2_contig682.14944.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3523bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:15495..19017- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGCTCGCGCGCTTAAGGCGGCGCTCGCCGCCCCGCTGCTGCTGCC
GCAGGGGGGCGGCGGTTACATGCTGCCCCGGCAGGACTTTTTCAGCCCTG
CCAATTACGGCGGCGTCGACTCACCGTAAGTGGATCGCTTGAAAAGCAAG
TAGTTTTTCCGGGGTCAGAGTGTGAGCACCGCCGTTGCAGAACGCGTTTC
TTCTTGTCTCATGTTGCACAAGTATGTAGCACAGGTGCAGTGGGTGTATG
GGTGGCACCCGGCGATCAAGTAGCGGCATGGAAATTCCAACGCTAGCAGC
GCGGGGTGGGGGGGGTAGGCTGCCATGAGCACGAAAACCGATCAATCTCG
TTGGCGGGACAAGCAGACCGTAAGCAGACCGTGGCTTGTGTGTACGTTCG
GGGGCGTTTTTTGGGGTTCTATCCTAAAGGAATCGTAAAGGAAGGAGTGT
CGTGACCGAGCGGCGTCTCATCCCTTCGTCCTTCTTTCCTGCGCTTGTGC
GCCGCCTGTCTCTGTCATGGCAGTCTCGGTCTCGGGGGCAAGGTCGCGCC
GGCGGTGCTCGAGGCGGCGGGTTCGCTCGCGGCTGCTGCTTCTGCTACTA
CCGCAGGCAGTAGCATCAGCAGCTCGTCGGCGCAGCCTACGAGCGCCGAC
GATGTCGGTCTCGGGTCAGGTGAGCGCCAGCGCGAGGTTCTCAGACGTTA
CATATGCTTCTATTTAGCTAGCAAAGCGCGGGGCCACGTTTTGCTTTTTC
GTTTGGACTTGAACGTCCACCCGTCACCCGGGTCGAATTGTATCCATAGG
TAGCTGACCACCAGTCCTGCACGTATTTGGCATACCTATTTGCCTCGAGG
CTTCGCGCACGGTGGAGCATCCTTACCCTGGGTCTCGCGTCTGGCTTTGA
ACCGCTCAAGCGTTCGCATTTTCGGTGGCACAGGGAGACATCGGCAACTG
TCTCTCAACACATGACGTACCCCCTCGTTAAAGCCTCGCCAGTTATAGCA
GTTAGTGCGCGGGCGTTAGACCCTCTGTTTTGTGTCGGCCGAGGTTGTTA
TATTTTTTTCTGGGGTCAGGCTATAAATTGCCGCCAAGGAGTAAAGTGTA
TGGATTCGTATAACCGGGCTCACGACATGGTGCCCCAAGTTCTTATTTTT
TTGGTATAGCCCGGCTCACGACAAGGTGCCCCAAGTTCCTATTTTCTGAG
TTCTTCGAGGCTCAATTCCTTGACCTGCCAGGTTCTTTTTAAGTGCGGCC
GCTAGCTGTATCACGCTTTTTGATGGCGCTAGTATGACGTGCGTGTACTG
ACTGCCGTGGTTGCCGCGCCTTGTTGCGTTGGGGTGCGGTGTGGTGTCGC
CAGGTGAAACCTGTGACCCGGAGGATGCAGAGTGCAAAGGCGACAACACA
GACGAGATGACCTTCTCCGTTCTGTACTGGATCCGCACGCTCTTCGTCTG
GTTCTCGGTAAGCCGCAGCGTATATGTCCAACCACCCACAGGCAACATCA
GTTCTGCAATAATACGTACATCTCCCTGCTCTTGCAGGGCTGCCTCCAAT
CCGAGGTCCGCTTTCCTTTGAACGTTCATGCGTGCGTGCGTGGTTGTGTA
TGCACGGCGAACGAAAAGTGTTGTCCAAATCAAACGGCACAAGAGCGTTT
CGCGAACACAGTCGACGGCCGGCCTTTTTTGCGAGGCTTTTGAAGAGCGA
GGTACATGCTACCTGTTTCAAACCCACGGGCAACATCAGTTGTACAACTA
CTCGTCGCCCTCCTGCAGCGCGCACACGGATACCATAGGCGACACAAGAT
ATCACACCCCCTGGGGCGATTTTCGAAGTTCGATTTCTCCGAAGCAGAAA
GAGCGTCAAGCGCCGAAAGCGGCGGCGTTGAAGCCGTCTGTCTGTCCGAG
AGCTTTTCCGAAAACGTATCGTTTCGCTTGTGCGTCCTTTCCGTGGTGGA
GTAATGGAGCTTTGAAAACCGGCGAGGGGGGGTCTGGTATCTTGCGTAGC
GTCACCTACGGTGGTTGCGAATAGAGTCTACCCACCCCGCCAGGCTGAAC
GTGCTTGGTGAGGGCGGGTAGGAGTACTCGTGTGTGTGTTTCGTGTTCGG
CCCTCTTCATGTGGCATCTACTTACACATGTTTCACGTGTCATCCGGGCT
CACACAGGAGGAAGGTCACGCAAGGAACTTTTTGCTTTTTCTTTTGGTTC
CACCTGCGGGTGCTTGCCTAGGCCAAGTTTTTTAGTTTTTTTCTCGAGAA
GGGTTCAGCCACCCCTTCCCTCATCAACCGTCGAGTCGAAGTTTGAATAC
TCACGAACTACATGGTTTTTGTTCGGCCCTGCCCGCACTTTAGAAACTCT
TAGCGTATGTGACACAAGATACCACCCCCTGGACCGACCGTTTTTTCAAC
GCAAGATTACTCAAATGAAATTCGTTTTCAGAAAGTCTTCGACAAGACGG
TAGCTTGCAACACCGCCAGTTTCGGCTTGGCGCCGCCGCTCTCTCGACTC
TGGAGTAATCGAGCTTTGAAAATCGGTCCAGGGGGGTGTTGTATCTTGTA
CCACCTACGGTATTCTGGCCGAGGCTCGTTTCTCGTTTCTCCCGAAAAGG
GTTCAGCCATCCATTTCCTCCTTCGTCAACCGTCGACTCGAAAACGCGCG
ACGAAGTACATCGTTTTTCCTCTGCAAGTAGTAAGAAAAGTAAGGAATCA
TATCCGGGAGAGTATCGACCCCAACCCTTGCGATTTTGCGGGTTCGCGAG
GTTAAGCCACTAGACCACCGGAGCTACAACACTGTAGGGGAGTGCGACGC
GACGAAATGAGCCACTATGTGCCAATGGATCGTTTTTCGCCCCAACCGCT
GCCCGGACCTCTGACACGATTTTTTTTGTTTTTCTCGTTCCCCCCCGTGC
ATCTGCCCTTCGCTGTCGTCGTTGACAAACAACAGGTCGCGCGCACGACG
ATCGTCGCCATCATGTACATCGCAGGGACGGCAACGTCCTTGTTCGTGGC
GATCAGGAGGATGTTGTCGCCCGGCTCGCGCAGCGGTGCCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGTGCCTCTGCTTCT
TGGTCGGTAGGGCGGGTGCTGGGAGGTCTGATCCACGGTAGAGGAACGCC
GGGCGCGCGTACCGCGGCGGGCCCACGCGCCCTCAGGGGTGCTCCTATAT
CGCCGTCGGCGCCGTCGGCGGTCATCATCGTCCCGACCGTCTTCCCGGCG
GCCGGCGCTACTTCCCCTGTCGCCGGCTCGACGGCTGCTACTTCGCCGCT
GCCAGCGACGACGCCTGCCATCGCCACCACTGCAGGCGGCGGCGCCCCGG
CCACAACCAACACCGCCGGCGGCGGTGGGTCTGGCGGTACTGCTGGAGGG
GGAGGAGGAGGAGGCCGCCGCGTCCCAGCCAGGATTTCGCGCATCGTTTC
AAACACCGACCGCTTCGTGGCCATGGCGCACGAGAACATGGACGACGCCC
TCGTCGCGTACGAGTGCCTGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig682:15495..19017-

>mRNA_E_fasciculatus_S2_contig682.14944.1 ID=mRNA_E_fasciculatus_S2_contig682.14944.1|Name=mRNA_E_fasciculatus_S2_contig682.14944.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:15495..19017- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGCTCGCGCGCTTAAGGCGGCGCTCGCCGCCCCGCTGCTGCTGCC
GCAGGGGGGCGGCGGTTACATGCTGCCCCGGCAGGACTTTTTCAGCCCTG
CCAATTACGGCGGCGTCGACTCACCTCTCGGTCTCGGGGGCAAGGTCGCG
CCGGCGGTGCTCGAGGCGGCGGGTTCGCTCGCGGCTGCTGCTTCTGCTAC
TACCGCAGGCAGTAGCATCAGCAGCTCGTCGGCGCAGCCTACGAGCGCCG
ACGATGTCGGTCTCGGGTCAGGTGAAACCTGTGACCCGGAGGATGCAGAG
TGCAAAGGCGACAACACAGACGAGATGACCTTCTCCGTTCTGTACTGGAT
CCGCACGCTCTTCGTCTGGTTCTCGGTCGCGCGCACGACGATCGTCGCCA
TCATGTACATCGCAGGGACGGCAACGTCCTTGTTCGTGGCGATCAGGAGG
ATGTTGTCGCCCGGCTCGCGCAGCGGTGCCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGTGGCAGTGCCTCTGCTTCTTGGTCGGTAG
GGCGGGTGCTGGGAGGTCTGATCCACGGTAGAGGAACGCCGGGCGCGCGT
ACCGCGGCGGGCCCACGCGCCCTCAGGGGTGCTCCTATATCGCCGTCGGC
GCCGTCGGCGGTCATCATCGTCCCGACCGTCTTCCCGGCGGCCGGCGCTA
CTTCCCCTGTCGCCGGCTCGACGGCTGCTACTTCGCCGCTGCCAGCGACG
ACGCCTGCCATCGCCACCACTGCAGGCGGCGGCGCCCCGGCCACAACCAA
CACCGCCGGCGGCGGTGGGTCTGGCGGTACTGCTGGAGGGGGAGGAGGAG
GAGGCCGCCGCGTCCCAGCCAGGATTTCGCGCATCGTTTCAAACACCGAC
CGCTTCGTGGCCATGGCGCACGAGAACATGGACGACGCCCTCGTCGCGTA
CGAGTGCCTGTAA
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