mRNA_E_fasciculatus_S2_contig682.14943.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G954_ECTSI) HSP 1 Score: 284 bits (727), Expect = 9.040e-88 Identity = 151/197 (76.65%), Postives = 165/197 (83.76%), Query Frame = 1
Query: 1 GSVLHFMFII-CYVALFVRHMFRAFIWPDMPAMSKRPSNLEESHGDGEIRLQRTWTASPVNDKALIPGPSASQDSRHFRRCQMSLLKREARRIIGKRTAGPRM-SRRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRHTRQVYQPVAT 585
G ++H MFII CYV LFVR++FRA PD+PAMS RPS+LEE G EIRLQ +WTA V DKA IP PSA Q SRHF+RCQ S LK EA RIIGKRTAG M SRR LLATIAALNAGLV+G++LVDLPSG KCAWY L HPAQFAILFLMVGLVYF+N LFNEADKVVYARLSCAT+AWMDE+RHTRQVYQPVAT
Sbjct: 21 GFLVHTMFIIFCYVPLFVRNVFRALFSPDVPAMSPRPSDLEEHRG--EIRLQCSWTAPLVKDKAAIPEPSAFQASRHFKRCQSSSLKHEALRIIGKRTAGSTMMSRRMLLATIAALNAGLVDGSLLVDLPSGLKCAWYNLEHPAQFAILFLMVGLVYFINWLFNEADKVVYARLSCATEAWMDEIRHTRQVYQPVAT 215
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 283 bits (725), Expect = 1.780e-87 Identity = 149/197 (75.63%), Postives = 165/197 (83.76%), Query Frame = 1
Query: 1 GSVLHFM-FIICYVALFVRHMFRAFIWPDMPAMSKRPSNLEESHGDGEIRLQRTWTASPVNDKALIPGPSASQDSRHFRRCQMSLLKREARRIIGKRTAG-PRMSRRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRHTRQVYQPVAT 585
G VL+ M IICYV LFV+ +FRA PD PAMS R S+LEE G EIRLQ +WTAS V DKA IPGPSA+Q SRHF+RCQ S LKREARR IGKRT G MSRR LLATIAALNAGLV+G++LVDLPSGFKCAWY L HPAQFAILFLMVG+VYF+NRLFNE DKV+YARLSCAT+AWMDE+RH+RQVYQPVAT
Sbjct: 21 GLVLYTMSIIICYVPLFVQSIFRALFSPDAPAMSPRSSDLEERRG--EIRLQLSWTASLVKDKAAIPGPSATQPSRHFKRCQSSSLKREARRSIGKRTGGLTMMSRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQVYQPVAT 215
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.690e-62 Identity = 117/175 (66.86%), Postives = 132/175 (75.43%), Query Frame = 1
Query: 73 IWPDMPAMSKRPSNLEESHGDGEIRLQRTWTASPVNDKALIPGPSASQDSRHFRRCQMSLLKREARRIIGKRTAGPRMS----RRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRHTRQVYQPVAT 585
I+ +PAM RPS LEE DGEI LQR W A +N KA IP P A+Q+ + +R Q S +KR RRI GKR AG RRTLLAT+AA+NAG VEGNV+VD+PSG KCAWY LTHPAQFAIL LMVGLV FVNRLFNEADKV+Y RLS ATDAWMDEMRHTR+ +QPVAT
Sbjct: 58 IFSGVPAMGTRPSGLEER--DGEICLQRKWAALRINGKAAIPVPRATQNPGNSQRYQNSSVKRATRRITGKRAAGFWSGCFPCRRTLLATMAAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLSRATDAWMDEMRHTRRGHQPVAT 230
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6F6_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.590e-22 Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 319 LLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMR 552
LL IAA+ GL EG +L DLPSG KCAWY L+HPAQ+A+L + +G +Y VNRLF++ D + ARLSCAT WM + R
Sbjct: 2 LLVAIAAIKLGLAEGTLLFDLPSGLKCAWYSLSHPAQYAVLIMTLGCLYGVNRLFDKLDSAMNARLSCATRNWMQQRR 79
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.480e-19 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 211 SQDSRHFRRCQMSLLKREARRIIGKRTAGPRM--------SRRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMR 552
SQ S ++ C+ S KRE R + K+ A + RR +LA I+ + +VEG L++ PSGF+C W L H QFAIL LM+G++Y VNRLF++AD+ +Y RL+CAT ++E R
Sbjct: 17 SQQSERYQACEAS-SKREIRHMSRKKAALHTLVRSSAGLGGRRAMLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERR 137
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.570e-19 Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 349 GLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRHTRQV 567
G+ E N+LVDLPSGFKC WY L+HP QFA+L +M L VNR+F DK YARLS A AWM+E R Q+
Sbjct: 7 GVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU8_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 7.430e-19 Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 319 LLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMR 552
LL I A+ GL EG +L DLPSG KCAWY L+HPAQ A L + +G +Y VNRLF++ D +YARLS AT WM + R
Sbjct: 97 LLVAIEAVKLGLAEGTLLCDLPSGLKCAWYNLSHPAQCAALIMTLGCIYGVNRLFDKLDSAMYARLSRATRNWMQQRR 174
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F6_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.810e-18 Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 325 ATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRH 555
A ++A+ LVEG L++LPSG +C W L H QFAILFLM+G++Y VNRLF++AD+ +Y+RL+CAT + E RH
Sbjct: 16 ALVSAIQVDLVEGKRLIELPSGVRCMWNDLPHGLQFAILFLMLGILYGVNRLFDKADEAMYSRLTCATAELLRERRH 92
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.760e-18 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 241 QMSLLKREARRIIGKRTAGPRMSRRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRH 555
Q+S K R + T RR +LA ++A++ LVEG L++ P F+C W L H QFAILFLM+G++Y VNRLF++AD+ ++ RL+CAT ++E RH
Sbjct: 36 QLSRNKAALRPFVRSSTGRSLGGRRAILALVSAVHVDLVEGKWLIEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCATARLLNERRH 140
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.050e-17 Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 259 REARRIIGKRTAGPRMSRRTLLATIAALNAGLVEGNVLVDLPSGFKCAWYGLTHPAQFAILFLMVGLVYFVNRLFNEADKVVYARLSCATDAWMDEMRHTRQ 564
REAR KR R S + ++A +VE N LV+ PS F+C W L HPAQFAI+FLM+ L++ V+R+F + D YARLS A AW++E RH Q
Sbjct: 8 REAR----KRPPALRRSHLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQ 105 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig682.14943.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig682.14943.1 >prot_E_fasciculatus_S2_contig682.14943.1 ID=prot_E_fasciculatus_S2_contig682.14943.1|Name=mRNA_E_fasciculatus_S2_contig682.14943.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=190bp MFIICYVALFVRHMFRAFIWPDMPAMSKRPSNLEESHGDGEIRLQRTWTAback to top mRNA from alignment at E_fasciculatus_S2_contig682:3681..7590- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig682.14943.1 ID=mRNA_E_fasciculatus_S2_contig682.14943.1|Name=mRNA_E_fasciculatus_S2_contig682.14943.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3910bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:3681..7590- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig682:3681..7590- >mRNA_E_fasciculatus_S2_contig682.14943.1 ID=mRNA_E_fasciculatus_S2_contig682.14943.1|Name=mRNA_E_fasciculatus_S2_contig682.14943.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=570bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig682:3681..7590- (Ectocarpus fasciculatus EfasUO2)back to top |