mRNA_E_fasciculatus_S2_contig6816.14941.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.630e-53 Identity = 103/160 (64.38%), Postives = 122/160 (76.25%), Query Frame = 1
Query: 55 MPGPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVA-WPQR*KGW---SFTMLHRSTSLSTWYNGQQRCR 522
MPGP+R+S L+A+V+ALNETC+G+ WYTSTKELQLASLEFC+ CRNY T+HLKVDAQ PRRLLA ADAPPP+P+ LC TRVPRLRAR VTW + A L+ PIFAM +CL+FG E S+EA+ W R GW SF+ LH STS S W +GQ CR
Sbjct: 105 MPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEALRLWHGR-DGWKRSSFSFLHYSTSRSVWSSGQHLCR 260
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 189 bits (481), Expect = 8.390e-51 Identity = 93/130 (71.54%), Postives = 108/130 (83.08%), Query Frame = 1
Query: 61 GPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQR*K 450
GP R S L+A++VALNET DGK WYTSTKE QLASLEFC+ CRN+ T+ LKVD++TPRRLLAAADAPPP+PKRLC TRVPRLRAR VTW+IPTA L I++M A+ LEF RAFE S+EAVAWP+R K
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLK 135
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 190 bits (482), Expect = 4.000e-50 Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 61 GPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQ 441
GPTR L+A++VALNETCDGK WYTSTKELQLASL+FC+ CRN TVHL VD Q PRRLLA+ADAPPP+PKRLC TRVPRLR+R VTWN+PTA L TPIFAM LEFG AF S+EAV WP+
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPE 171
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 182 bits (463), Expect = 5.680e-50 Identity = 88/130 (67.69%), Postives = 100/130 (76.92%), Query Frame = 1
Query: 61 GPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQR*K 450
G T L +++VALNETCDG WYTSTKELQ ASLEFC+ CRNY +HLKVD Q PR LLAAADAPPP+PKRLC TRVPRLRAR VTWN+ A L PIFA+ +CLEFG F+GS+EAV WP+R K
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLK 137
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.370e-49 Identity = 91/130 (70.00%), Postives = 104/130 (80.00%), Query Frame = 1
Query: 61 GPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQR*K 450
GPTR+S L + VALNETCDGK WYTSTKELQLASLE CM CR+Y T+HL VDA TPRRLLAAADAP P+PKRLC TRVPRLRAR TWN+PTA + T IFA + LEFG+AF GS++A+ WP+R K
Sbjct: 130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLK 259
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 8.550e-44 Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 1
Query: 91 VVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWP 438
+++ALNE CDGKRWYTSTKELQLASLEFC+ CR Y + LKVDAQTPR LLAA DAPPP+ KR C TRVPRLRAR V WN+PTA L T +FA+K NCL FG F GS+EAV WP
Sbjct: 21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWP 136
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.050e-43 Identity = 87/129 (67.44%), Postives = 100/129 (77.52%), Query Frame = 1
Query: 58 PGPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQR 444
PGPT + L+A+ VAL ET DGK WYTSTKELQLASLEFCM CR Y T+HL VD + PR LLAAAD PP +PKRL RVPRLRAR VTWN+PTA L +PIFA+ + L+FG AFEGS+EAV WP+R
Sbjct: 29 PGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRR 157
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 164 bits (415), Expect = 6.230e-41 Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 1
Query: 115 CDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCSTRVPRLRARCVTWNIPTAEILTTPIFAMKGANCLEFGRAFEGSVEAVAWPQR*KGWSFT 465
CDGKRWYTSTKELQ ASLEFC+ CR Y T+ L+VD QTPR LLAA DAP P+ KR C TRVPRLRAR V WN+PTA L +PIFA+K L+FG AFEGS+E+VAWPQR K F+
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFS 118
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 145 bits (367), Expect = 2.640e-35 Identity = 79/133 (59.40%), Postives = 93/133 (69.92%), Query Frame = 1
Query: 49 SAMPGPTRTSWLDAVVVALNETCDGKRWYTSTKELQLASLEFCMVCRNYNTVHLKVDAQTPRRLLAAADAPPPYPKRLCS-TRVPRLRARCVTWNIPTAEILTT-PIFAMKGANCLEFGRAFEGSVEAVAWPQ 441
S PGP R+S L+A+VVAL+ETCDGK WYTSTKELQLASL FC CRN+ TVHLKVD PRRLLAAADAPPP + S TR P A C + ++ I +FAM + LEFG FEG++EAVAWP+
Sbjct: 126 STAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPR 258
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI) HSP 1 Score: 102 bits (254), Expect = 2.040e-22 Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 3
Query: 1098 MAMFSDFDQRIGTXXXXXXXXXXTLGDKFRQSLHGLGTWMPNLEAFRLL--HHGSGGDSLLRGVEWPKGLRELTVFEESSLDGVVIPSTVEV-HR 1373
M M S+F+QRIG TLG KFRQSL GLGTWMPNLE+ RLL + DSLLR +EWPKGL +LTVF+ESSL+ V IP+ VEV HR
Sbjct: 1 MIMRSEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEVLHR 95 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6816.14941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6816.14941.1 >prot_E_fasciculatus_S2_contig6816.14941.1 ID=prot_E_fasciculatus_S2_contig6816.14941.1|Name=mRNA_E_fasciculatus_S2_contig6816.14941.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=320bp MAATLKRVEFHYASPFNQPIDLVQWPATLQRLLLGGKFNRPIEGVAWPDSback to top mRNA from alignment at E_fasciculatus_S2_contig6816:1962..4525+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig6816.14941.1 ID=mRNA_E_fasciculatus_S2_contig6816.14941.1|Name=mRNA_E_fasciculatus_S2_contig6816.14941.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2564bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6816:1962..4525+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6816:1962..4525+ >mRNA_E_fasciculatus_S2_contig6816.14941.1 ID=mRNA_E_fasciculatus_S2_contig6816.14941.1|Name=mRNA_E_fasciculatus_S2_contig6816.14941.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=960bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6816:1962..4525+ (Ectocarpus fasciculatus EfasUO2)back to top |