mRNA_E_fasciculatus_S2_contig6812.14938.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6812.14938.1
Unique NamemRNA_E_fasciculatus_S2_contig6812.14938.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6812.14938.1 vs.
Match: AhpC-TSA (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB15_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.550e-27
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:  239 MGKQGELMEQMAKAQRDRMKRELEEKLRESGDLPEEDNDAAAAKPAAAKGAAARIKPDRSWRQAGATKPPSAS 457
            MGKQGELMEQMAKAQRDRMKRELEEKLRESGDLP+E++D AA KPAAAKGAAARIKPDRSWRQAGA KPPSAS
Sbjct:    1 MGKQGELMEQMAKAQRDRMKRELEEKLRESGDLPKEEDDDAA-KPAAAKGAAARIKPDRSWRQAGAAKPPSAS 72
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6812.14938.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
AhpC-TSA1.550e-2791.78domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6812contigE_fasciculatus_S2_contig6812:2713..3835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size489
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-17_002350.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842338.6675045-CDS-E_fasciculatus_S2_contig6812:2712..29831696842338.6675045-CDS-E_fasciculatus_S2_contig6812:2712..2983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6812 2713..2983 -
1696842338.6845756-CDS-E_fasciculatus_S2_contig6812:3619..38131696842338.6845756-CDS-E_fasciculatus_S2_contig6812:3619..3813Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6812 3620..3813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842338.695104-UTR-E_fasciculatus_S2_contig6812:3813..38351696842338.695104-UTR-E_fasciculatus_S2_contig6812:3813..3835Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6812 3814..3835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6812.14938.1prot_E_fasciculatus_S2_contig6812.14938.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6812 2713..3813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6812.14938.1

>prot_E_fasciculatus_S2_contig6812.14938.1 ID=prot_E_fasciculatus_S2_contig6812.14938.1|Name=mRNA_E_fasciculatus_S2_contig6812.14938.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=155bp
MRRSPLLLVALPGWVWSFLTPAPLSRPSQPAAVRPVDGRAPPPDSSRRGS
STTSSHATRCRPLFRKGFSKGGMGKQGELMEQMAKAQRDRMKRELEEKLR
ESGDLPEEDNDAAAAKPAAAKGAAARIKPDRSWRQAGATKPPSASAGGAP
AAAGT
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mRNA from alignment at E_fasciculatus_S2_contig6812:2713..3835-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6812.14938.1 ID=mRNA_E_fasciculatus_S2_contig6812.14938.1|Name=mRNA_E_fasciculatus_S2_contig6812.14938.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1123bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6812:2713..3835- (Ectocarpus fasciculatus EfasUO2)
AGCATTGGCAGTTAGGTCGACGATGCGTCGCTCACCGCTGCTTCTGGTCG
CCCTTCCTGGGTGGGTGTGGAGTTTCCTCACCCCAGCCCCGCTGTCGCGT
CCCTCGCAGCCCGCTGCTGTGAGGCCAGTCGATGGGAGGGCGCCCCCTCC
CGACAGTAGTAGACGAGGTTCTTCAACAACGAGCTCTCATGCTACGAGGT
GTCGTCCTCTCTTCAGGTACGTGTGTGTGCTTCGGGTGTGTGCCGCGGGC
TTATGACCCCTACAGCGAGAGGGGTGCATTGAGCTGATACCCTGTAGTTA
TCTTGGTGGAATGCGAAATAGATTCAGCGCGCAACCTCGGGGGCTCTCAT
GCTCCCGCTGATGAGGCAGCCGGATTAGAGGCGGCGCAACCTCACTGCAA
CCACCGTCGTTTTGGACTCATGTCGCACGCATCACGCACTTACGACTTCC
CTGCGGCTAGAAATTACTCACCCTGCTAAGTTGGCACAGCTGCATAGTGG
TGCTTCGGGGCGTGAACTACGCGCCTACGCAAGGCAGACCGTTTGGGATT
CACAAATAAGGATGCCTGCACCGATCTCTCGTGATTCCAAAAGGCGCAAT
TCGTTTGACGCGATCCTCGGTATGCATCGTGGTGATGAGCGCGCCAGAGT
TTAGTGAGTTCATCTGCCCTCAATCAGAAAGTGCATCTGCCCTCAACCTC
CATACAACCAACGCGTTCGGTTGAGGCTTGAATCCGTCAAAGTCGGGCTC
CATCCTGTGCGGTCTTGCGCCAGCTCTGTCCGCTTGTGTTCTTCGCTACA
TCCCACCTGTTCACTTACCCCCACGAACTGGATGATGCGTGCCTGTAATC
AGGAAAGGGTTCTCGAAGGGGGGCATGGGCAAGCAGGGGGAGCTCATGGA
GCAGATGGCGAAGGCGCAGCGGGACAGGATGAAGAGGGAGCTCGAGGAGA
AGCTGAGGGAGAGTGGGGACTTGCCCGAAGAAGACAACGATGCCGCCGCC
GCAAAGCCTGCCGCGGCGAAAGGCGCGGCGGCAAGAATCAAGCCCGACCG
GTCTTGGCGACAAGCCGGCGCCACCAAGCCCCCTTCCGCCTCGGCCGGCG
GCGCGCCAGCAGCGGCAGGAACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6812:2713..3835-

>mRNA_E_fasciculatus_S2_contig6812.14938.1 ID=mRNA_E_fasciculatus_S2_contig6812.14938.1|Name=mRNA_E_fasciculatus_S2_contig6812.14938.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6812:2713..3835- (Ectocarpus fasciculatus EfasUO2)
ATGCGTCGCTCACCGCTGCTTCTGGTCGCCCTTCCTGGGTGGGTGTGGAG
TTTCCTCACCCCAGCCCCGCTGTCGCGTCCCTCGCAGCCCGCTGCTGTGA
GGCCAGTCGATGGGAGGGCGCCCCCTCCCGACAGTAGTAGACGAGGTTCT
TCAACAACGAGCTCTCATGCTACGAGGTGTCGTCCTCTCTTCAGGAAAGG
GTTCTCGAAGGGGGGCATGGGCAAGCAGGGGGAGCTCATGGAGCAGATGG
CGAAGGCGCAGCGGGACAGGATGAAGAGGGAGCTCGAGGAGAAGCTGAGG
GAGAGTGGGGACTTGCCCGAAGAAGACAACGATGCCGCCGCCGCAAAGCC
TGCCGCGGCGAAAGGCGCGGCGGCAAGAATCAAGCCCGACCGGTCTTGGC
GACAAGCCGGCGCCACCAAGCCCCCTTCCGCCTCGGCCGGCGGCGCGCCA
GCAGCGGCAGGAACG
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