mRNA_E_fasciculatus_S2_contig6778.14900.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6778.14900.1
Unique NamemRNA_E_fasciculatus_S2_contig6778.14900.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6778.14900.1 vs.
Match: TAF (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPB7_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.150e-102
Identity = 209/273 (76.56%), Postives = 217/273 (79.49%), Query Frame = 2 
Query:    2 HGTTYPTLQARANDMFDTHVARPKTRLTTLYGAITGVACLGSMPVEQTLGPRVDSLADKISQSCMAATLRRDTKGVAEANQCRAALLRAIGFGAIACTDELFGEHGLNSERAGRGGEPKQGSS----PAAGDNVGEGGAKNGATSISSANGAARASHXXXXXXXXXXXXXDRSLYSPQTAKAAGAGAXXXXXXXXXXXXXXXXADK---------GKAGSGGRAGXXAEDXXDGGSIAADDLDEVVFPWYVVGLRRDGAPQSWWLTNKLSTFV 781
            HG TYPTLQARANDMFDTHVARPKTRLTTLYGAITGVACLG MPVEQTLGPRVDSLADKISQSC+AATLRRDTKGVAEANQCR ALLRAIG G IACTD+LFGE GLN+ER GRGGEPKQGSS    PAAG +VGEGGAKNG TS SSANGAARASH             DRSLYSP   K+A    XXXXXXXXXXXXXXXX            GKAGS   +G  AE    GGS+AA DLDEV+FPWYVVGLRRDGAPQSWWLTNKLSTFV
Sbjct:  330 HGNTYPTLQARANDMFDTHVARPKTRLTTLYGAITGVACLGRMPVEQTLGPRVDSLADKISQSCLAATLRRDTKGVAEANQCRVALLRAIGCGTIACTDDLFGEPGLNAERTGRGGEPKQGSSGGGNPAAGGSVGEGGAKNG-TSNSSANGAARASHGVRRRADRLRKRLDRSLYSPLRTKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAGS---SGGVAEHNG-GGSVAAADLDEVIFPWYVVGLRRDGAPQSWWLTNKLSTFV 597
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6778.14900.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
TAF1.150e-10276.56domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6778contigE_fasciculatus_S2_contig6778:4082..7994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score296.2
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D8LDH0
Model size2015
KEGG koko:K03131
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Transcription initiation factor TFIID
EggNOG OGsCOG5095@1,KOG2549@2759
Ec32 ortholog descriptionHistone-fold
Ec32 orthologEc-15_000650.1
Cds size741
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842334.7182572-UTR-E_fasciculatus_S2_contig6778:4081..41241696842334.7182572-UTR-E_fasciculatus_S2_contig6778:4081..4124Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6778 4082..4124 +
1696842334.7731574-UTR-E_fasciculatus_S2_contig6778:6763..79941696842334.7731574-UTR-E_fasciculatus_S2_contig6778:6763..7994Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6778 6764..7994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842334.7319942-CDS-E_fasciculatus_S2_contig6778:4124..41881696842334.7319942-CDS-E_fasciculatus_S2_contig6778:4124..4188Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6778 4125..4188 +
1696842334.7448242-CDS-E_fasciculatus_S2_contig6778:4977..51321696842334.7448242-CDS-E_fasciculatus_S2_contig6778:4977..5132Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6778 4978..5132 +
1696842334.7539525-CDS-E_fasciculatus_S2_contig6778:6241..67631696842334.7539525-CDS-E_fasciculatus_S2_contig6778:6241..6763Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6778 6242..6763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6778.14900.1prot_E_fasciculatus_S2_contig6778.14900.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6778 4125..6763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6778.14900.1

>prot_E_fasciculatus_S2_contig6778.14900.1 ID=prot_E_fasciculatus_S2_contig6778.14900.1|Name=mRNA_E_fasciculatus_S2_contig6778.14900.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=247bp
MFDTHVARPKTRLTTLYGAITGVACLGSMPVEQTLGPRVDSLADKISQSC
MAATLRRDTKGVAEANQCRAALLRAIGFGAIACTDELFGEHGLNSERAGR
GGEPKQGSSPAAGDNVGEGGAKNGATSISSANGAARASHGARRRADRLRK
RLDRSLYSPQTAKAAGAGATAGAAAGAGGAAAGTGADKGKAGSGGRAGGG
AEDDDDGGSIAADDLDEVVFPWYVVGLRRDGAPQSWWLTNKLSTFV*
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mRNA from alignment at E_fasciculatus_S2_contig6778:4082..7994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6778.14900.1 ID=mRNA_E_fasciculatus_S2_contig6778.14900.1|Name=mRNA_E_fasciculatus_S2_contig6778.14900.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6778:4082..7994+ (Ectocarpus fasciculatus EfasUO2)
GCACGGGACCACCTACCCGACGCTCCAAGCCCGGGCGAACGACATGTTCG
ACACCCACGTCGCGAGACCCAAGACGAGGCTGACCACCCTGTACGGAGCT
ATCACAGGTACACGCTGACAATGTGGTGGTGGGCTACTGCTGTACCGACG
TATTTCGCGAGAAATTAAGTTTACGAGGACGTAGACCAGGGAGGGGGAAC
GCGGACCCTGTCCATTACCCTAACCCTGACATAAATTCTCTGATTGCATG
CTTTACCCAACATGATTTACTTGCCTAGCAGAAAAACCCTGCGAAGGCCG
CTGGGGTGTACATAGGTCTTTCGAAATTTGTACGCTTTGATCACCGGGGT
GTTGCTGGTTCGAATATCACCAAGACTGTGTGTATTGTGTTGGTTGCTCC
CAGCGGTGGTCTTCTTCCTTCCTTTCCCCGTCAGTGCATGAACGCACGCG
TGTAGTGGGGGGAGTGTGAACATGTCGTCCCCGCAAAACCTACGGCGGAT
TTGTTGAGTCCGGCCGGATGATGGCGGGTTTTTACCAATTTGCCGCTGCA
CAGAGTAGACCGACAACTTTTTTGTTCGCAGGAAAGCTGGTCGAAATGGC
AAGCGAACCAGAATCAGAAGTTTGGGAATCAGCTCGTTTTCGCAGGGGGG
CGTCGGTTTTATTCCCAGGGTGCTGTTTGCTGTGCTTTCTCTCCTGATAC
ACTCGGAATTGTTTTGTCTTTTCGGCCTGGAGCGGACTAGGAGGCACCGT
TAAGGCAACAACAACGGTAGCACAAGGTTCGTTATCGGCACACGTAGCCG
CAGTTCTCCACCCCCCAACCGCCCCCCGCCCCTTCCCCCTTCCCCACCCA
CGACGGGCGGCCTGCTTGATCGAATCCCTGGGTTGATCGTCGAAAGGGGT
GGCTTGTCTGGGCAGCATGCCGGTGGAGCAGACCCTGGGGCCTAGGGTGG
ATAGCTTGGCGGACAAGATCTCCCAGTCCTGCATGGCGGCCACCCTAAGG
CGGGATACGAAGGGCGTGGCCGAAGCCAACCAGTGCCGCGCTGCCCTTCT
CGTGAGTTTTTTTTTTTTTGCAACAGTATACATGCAATCAAAGCAAAACA
ACTCGTTCGAGATATATACCGAATACAGTCGAAAGGGATCGGTTGAAGTC
TTTACAATGCGTGGGAGAAAAAACGGCTGGATGCTAGGCTTATTTTGAGT
CTGAAACTTGTACTGAATCTTTAATAGTGCTGCCAGCTGGTGTTGGGCAC
AAAATAAAATTGTTTGAACTTTTTCTCGGAAAGAGATACGATTGAGCACG
GCCAACCTCCACGCGAAACCACCGAGACTCGTGATCGAGAAAGGAAGCAG
AGTGACAACGCCGGGACATTTGCCGGGTTGGCTGAGAAAAGGACGGTTGC
AGTTAAACCAAGCGGCCTCAAGTCATCCCGTCAGGGAGTTTGGAAGAGTC
GGGCGTTTGGATTGAGGCCACACAAAGTGTGCCGGGAACCGCTCGCCTCC
CGTAACGCAGGGATAGAGCAGGTCCGGGTCTTTCGGCGCCGAATATACGT
CCACGACGCTAAGCGTTGAGGGGTATGGCCTGGACACAAAGCTCTTGCCG
CAACGTTCTTTCGAGGCCTTCGTTTTTTTTTTTGGCACCGACGAACGCTT
AGGAGACAGATCGGTAAGCTTCAGGACGGCCGGGGGAACCCGTGAGCAAG
TAGAGCGCGCTTCACTGCGACAGGGCTTCGCTTCGTCCACCAAGTTGCAT
GGTGCAGCTCCAGAAGCGATGTTGCACGTGCGTGGCGCCAGCGGGCCCTG
CGCATTCCTTGCGGCCTTTACAGCACGGGAACGAATAATGTGAATTGGCG
GACTGCGTTTGGCAAGTACACTTATCGTCATCTTTGAAATAAAGAGAAGG
GGGTTTCGCAGCCCTAACCTTAACCCTACCCCTACCCCTACCCCTACCCC
TACCCCTACCCCTACCCCGTACTAAATCCAAGATTAGTATCGTCGCGAAG
GCTAGCGGAAAGTGGCTTGCCGTCCTAGACAACGAGAGTGACAGGTGTTC
CCACCGGCAGTATGTTGATTTGCCTGTGTCCCGAAGACGCGTTCGGCAGC
CAGAGTGGTTGGTAGGCGTCACACAGCTCTGTTCTCACTTCCCGAACCCC
CCCCCTGCAGCGAGCGATAGGATTTGGGGCGATCGCGTGCACGGACGAGT
TGTTCGGCGAACACGGCCTGAATTCCGAGAGAGCAGGCAGGGGGGGCGAG
CCGAAGCAAGGCAGCAGCCCGGCCGCAGGCGACAACGTTGGCGAGGGCGG
AGCGAAGAACGGGGCTACTAGTATCAGCAGCGCGAACGGTGCTGCGAGGG
CTTCGCACGGCGCCCGCAGACGAGCGGACCGCCTGCGGAAACGCCTGGAC
AGGTCGTTGTACTCCCCTCAGACGGCCAAGGCGGCCGGCGCCGGCGCCAC
CGCCGGCGCCGCAGCAGGAGCAGGCGGTGCTGCTGCCGGCACGGGGGCAG
ACAAGGGCAAGGCTGGCAGCGGCGGCCGCGCCGGCGGCGGGGCAGAAGAC
GACGATGACGGCGGGAGCATTGCCGCTGACGACTTGGACGAGGTGGTCTT
CCCGTGGTACGTGGTGGGGTTGCGGAGAGACGGCGCGCCGCAGAGCTGGT
GGCTGACGAACAAACTCAGCACGTTCGTTTAATGATGAACGACCGAGTGA
TGCCGACGCGCGTCCCTGGCACCCGTGTAGCGGCTGCGACAACGCCTATG
CCACGCAACGATTGAGCTATATACCCCACTAGCAGCCCGGAGCGGTGTAG
AGCTTCGCGAAGGGCTTCCGCGCTCTGGAGCGATGGATGTTGTCGTGCGG
AGGGGCTGGTTGCCCCCGCGGGTTCCTCGACAGCGTGTGGTGAATTGCGG
TTCGCGGCGTATAAAGATAGTTGAGTCTCTTTCGGTTCATCGTCAGGGGG
CCGGTTGTCGCTGTTCTTCTGTCGGATGAAGGTAAAGCAGTAAGGAAGGG
CTTCGTTCACTCTTACCTTCTTTTTTTTTTTCCCGACGTCGGCGCCGTTT
TGGCAAGGACGCGGTCTGTGGTACTTGTTGCTTGCCGCGAGACTTGTAAC
TAGGTAGTGTTAGAGTGAAAGGCCGGTGTTTGTGCGATCTGCCAGAGATC
AACCTTCTTTCGCGAAGGTGCGCTTGCCTCTGAATAGTTTGGCTGTTTAC
TCCTTGCCACTCCCGCGGCTCGGCCACCACCAGTACATGGTGTGACACGA
AAACGTCTCGCACCAGCGTAAAATCGCGTTTTGATTAAACATGGTTAGCT
CTTAGTTGAACTGGAGGGTTCTGGGCCAAAGTTATGGCTGGGCGGGAGAT
GCTTAAGGAAGCCAATAGCACTTTCTCGAAAGGCAACCATCGAACACACG
GAACGACTGTTTCGTTCTTTACCGGAAGACGGGCGTTTGGCGTGCAAAAG
TAATAAGTGTGCTAAACCCGTACGAAGCCAGACTGCCTGTGTGCACAAGC
ACGAGCTGCAAACCCATGAGTATCTTGCAAGCGCTCTGTTGCACAGGCGG
GGGCGTGCAAGAAAGTCGGGAAGCATAAACATCATGATGCGAGAAAAGAG
TCGCCCACGCGGAACTGTCGCACATCAGTGCTCGAACGTGGGATATAACG
AATGCGAACCTCCACGAGTCAACCGTCTCACGTGCCGTCTCCTAGTTTCT
TACCACCAGCCACCAGCAGTATCTAAGCGTTCGATGTTCTTTTCTCCGGA
CGAAATTCCTACGCCTACGGAAGACAAAGTTTAAGCACGGTGTGGAACTT
GCGGAAGACAAGCACTTGAGAAAGAGAACTGTAGGCTTTCATCTTGCACA
ACTGTCAAGACTTGTTTCGTGCGGCAGGTGTTTACCTGTGGGTACTCTGT
AGGGTAAGGGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6778:4082..7994+

>mRNA_E_fasciculatus_S2_contig6778.14900.1 ID=mRNA_E_fasciculatus_S2_contig6778.14900.1|Name=mRNA_E_fasciculatus_S2_contig6778.14900.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6778:4082..7994+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCGACACCCACGTCGCGAGACCCAAGACGAGGCTGACCACCCTGTA
CGGAGCTATCACAGGGGTGGCTTGTCTGGGCAGCATGCCGGTGGAGCAGA
CCCTGGGGCCTAGGGTGGATAGCTTGGCGGACAAGATCTCCCAGTCCTGC
ATGGCGGCCACCCTAAGGCGGGATACGAAGGGCGTGGCCGAAGCCAACCA
GTGCCGCGCTGCCCTTCTCCGAGCGATAGGATTTGGGGCGATCGCGTGCA
CGGACGAGTTGTTCGGCGAACACGGCCTGAATTCCGAGAGAGCAGGCAGG
GGGGGCGAGCCGAAGCAAGGCAGCAGCCCGGCCGCAGGCGACAACGTTGG
CGAGGGCGGAGCGAAGAACGGGGCTACTAGTATCAGCAGCGCGAACGGTG
CTGCGAGGGCTTCGCACGGCGCCCGCAGACGAGCGGACCGCCTGCGGAAA
CGCCTGGACAGGTCGTTGTACTCCCCTCAGACGGCCAAGGCGGCCGGCGC
CGGCGCCACCGCCGGCGCCGCAGCAGGAGCAGGCGGTGCTGCTGCCGGCA
CGGGGGCAGACAAGGGCAAGGCTGGCAGCGGCGGCCGCGCCGGCGGCGGG
GCAGAAGACGACGATGACGGCGGGAGCATTGCCGCTGACGACTTGGACGA
GGTGGTCTTCCCGTGGTACGTGGTGGGGTTGCGGAGAGACGGCGCGCCGC
AGAGCTGGTGGCTGACGAACAAACTCAGCACGTTCGTTTAA
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